Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001419.1 Hibiscus syriacus cultivar Beakdansim tig00002757_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87442

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1897--1930
13
2.6
13
90
0
50
79
0
2
17
0.86
2374--2439
2
33.5
2
90
3
107
53
1
0
45
1.09
2374--2451
16
5.1
16
90
3
90
56
1
0
42
1.07
3615--4338
105
7.0
105
92
1
1140
22
16
26
33
1.96
3615--4338
207
3.5
208
90
2
1132
22
16
26
33
1.96
3616--4338
312
2.3
313
91
2
1134
22
16
26
33
1.96
4981--5137
68
2.4
64
84
4
197
35
9
22
33
1.86
4981--5163
64
2.8
67
81
5
203
37
9
21
31
1.85
5113--5236
36
3.4
36
82
6
160
40
13
20
25
1.89
6201--6244
22
2.0
22
91
8
72
27
11
22
38
1.88
6835--6886
22
2.3
24
83
9
65
0
15
9
75
1.05
6846--6897
23
2.2
24
83
10
72
0
11
7
80
0.89
6846--6906
13
5.1
12
75
16
56
0
13
8
78
0.95
8082--8120
8
5.0
8
84
6
53
58
12
17
10
1.61
8082--8120
15
2.5
15
87
4
51
58
12
17
10
1.61
10454--10490
12
3.0
12
92
4
56
70
0
2
27
1.01
14572--14668
48
2.0
48
100
0
194
42
16
10
30
1.82
17108--17147
15
2.7
15
88
0
53
10
57
17
15
1.64
24535--24559
10
2.5
10
100
0
50
60
32
0
8
1.26
24702--24755
22
2.5
20
77
14
54
50
0
1
48
1.11
33449--33498
25
2.0
25
84
7
66
26
2
0
72
0.96
34842--34891
2
25.0
2
100
0
100
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35082--35130
25
1.9
26
83
4
64
22
18
0
59
1.38
38698--38744
23
2.0
23
91
0
76
34
12
31
21
1.91
51811--52039
114
2.0
114
100
0
458
29
26
13
30
1.94
54313--54388
36
2.1
36
85
7
100
47
1
3
47
1.29
54534--54571
20
1.9
20
88
0
58
21
26
10
42
1.85
55674--55764
3
30.3
3
100
0
182
65
0
34
0
0.93
56531--56558
2
14.0
2
100
0
56
50
0
0
50
1.00
59381--59520
29
4.8
29
75
14
110
32
6
9
51
1.59
60809--60885
25
3.2
25
67
14
79
44
2
2
50
1.29
60866--60897
14
2.3
14
100
0
64
56
0
0
43
0.99
61815--62155
54
6.3
54
86
4
420
29
19
17
33
1.95
61815--62155
108
3.1
108
88
2
479
29
19
17
33
1.95
62423--62476
19
2.6
21
85
8
67
29
18
16
35
1.93
74054--74324
81
3.4
78
80
8
262
24
22
22
30
1.99
81701--81745
23
2.0
23
86
0
63
48
17
11
22
1.78

Tables:   1

The End!