genome.fa.s1420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001420.1 Hibiscus syriacus cultivar Beakdansim tig00002758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77818

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157--196	2	20.5	2	94	5	73	50	0	0	50	1.00
8339--8385	18	2.6	18	96	0	85	31	23	27	17	1.96
8529--8568	20	2.0	21	95	5	73	37	35	10	17	1.83
17304--17409	36	2.9	36	94	2	178	32	4	14	49	1.64
23564--23634	35	2.1	35	97	2	135	33	21	16	28	1.95
23990--24041	20	2.6	20	96	0	95	38	26	13	21	1.90
24031--24129	21	4.8	20	72	6	72	36	23	19	21	1.95
24096--24289	20	9.6	20	81	5	221	35	25	19	19	1.95
24096--24289	60	3.2	60	83	0	253	35	25	19	19	1.95
24671--24741	33	2.2	33	92	0	115	11	22	18	47	1.80
24862--24916	14	3.6	14	73	21	56	41	23	25	9	1.83
24862--24932	33	2.2	33	94	0	124	43	25	22	8	1.81
24928--25025	19	5.7	19	70	22	81	10	24	22	42	1.84
24950--25039	14	5.7	14	74	23	81	8	25	23	42	1.83
24933--25047	33	3.5	33	95	0	212	9	24	20	45	1.81
26744--27125	185	2.1	186	98	0	748	22	12	18	46	1.83
26744--27123	93	4.1	93	98	0	744	22	12	18	46	1.83
27167--27295	19	7.3	19	75	17	125	45	28	17	8	1.77
27203--27295	33	2.8	32	91	4	150	46	27	18	7	1.76
27167--27295	52	2.5	52	74	14	140	45	28	17	8	1.77
27291--27425	19	7.6	19	76	16	137	10	19	24	45	1.81
27313--27369	14	3.7	14	77	20	60	8	21	24	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27296--27388	33	2.8	33	98	0	177	9	20	22	47	1.79
29240--29312	38	1.9	38	97	0	137	28	1	16	53	1.51
29235--29299	19	3.4	19	64	8	51	24	1	15	58	1.46
29294--29329	14	2.6	14	95	0	63	33	0	22	44	1.53
29456--29896	19	24.7	19	81	14	564	14	21	17	46	1.84
29461--29868	52	7.6	52	91	6	663	14	21	17	46	1.83
29456--29868	161	2.6	161	98	0	790	14	22	17	46	1.84
32200--32224	12	2.1	12	100	0	50	0	28	0	72	0.86
32399--32445	24	2.0	24	87	8	69	38	21	14	25	1.92
33119--33487	20	18.5	20	85	4	449	19	18	26	34	1.95
35724--35749	13	2.0	13	100	0	52	38	0	0	61	0.96
40558--40623	29	2.2	30	81	7	73	34	6	15	43	1.71
42727--42932	108	1.9	108	90	0	331	21	17	28	32	1.96
43682--43706	3	8.3	3	100	0	50	68	0	0	32	0.90
44208--44278	29	2.4	28	76	17	72	45	2	1	50	1.25
44370--44445	27	2.7	29	76	12	77	42	1	1	55	1.16
44378--44431	24	2.2	26	83	12	78	40	1	0	57	1.09
47526--47569	23	1.9	23	86	9	63	47	0	4	47	1.22
47562--47591	14	2.1	15	93	6	53	36	3	0	60	1.14
54512--54541	14	2.1	14	93	0	51	43	0	0	56	0.99
55236--55288	15	3.0	18	70	30	51	15	5	15	64	1.47
55236--55304	35	2.0	33	88	5	102	14	4	18	62	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55325--55381	24	2.4	24	90	0	96	14	21	33	31	1.92
62665--62905	121	2.0	121	89	0	365	29	19	7	42	1.80
63172--63224	20	2.7	20	80	8	65	43	0	5	50	1.25
63243--63310	2	34.0	2	100	0	136	50	0	0	50	1.00
72824--72871	17	2.8	17	83	0	60	39	2	10	47	1.49
75093--75134	18	2.2	20	87	8	61	30	0	16	52	1.44
75012--75153	63	2.2	63	79	9	155	28	0	16	54	1.47
75628--75665	20	1.9	20	88	0	58	34	28	15	21	1.94
75712--75815	46	2.3	44	88	6	147	31	20	18	29	1.96
76998--77040	22	2.0	21	82	17	52	46	6	9	37	1.63

Tables:   1

The End!