genome.fa.s1421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001421.1 Hibiscus syriacus cultivar Beakdansim tig00002759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159969

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347--484	42	3.3	41	77	6	109	33	19	19	27	1.96
470--590	41	3.0	41	88	0	179	30	15	19	33	1.93
3874--4071	42	4.7	42	91	0	261	22	16	19	41	1.90
3875--4123	126	2.0	125	79	6	270	22	17	19	40	1.91
9932--10077	43	3.4	44	77	6	145	29	20	19	30	1.97
10163--10266	43	2.4	42	80	10	129	30	20	22	26	1.98
11374--11607	116	2.0	116	99	0	459	44	4	14	36	1.66
12953--12987	2	17.5	2	93	0	61	48	2	0	48	1.16
19182--19283	21	4.7	22	68	12	68	73	2	7	15	1.18
19204--19245	16	2.5	17	84	7	50	73	4	2	19	1.12
19220--19325	42	2.5	41	80	13	108	71	1	9	16	1.21
19298--19339	21	2.0	21	90	0	66	78	2	7	11	1.04
20504--20541	3	12.7	3	100	0	76	65	0	0	34	0.93
20550--20652	41	2.5	39	81	10	118	46	4	1	46	1.35
20615--20775	30	5.2	30	85	8	189	48	4	3	43	1.40
20707--20931	37	6.2	37	82	10	218	44	6	4	44	1.50
20707--20945	73	3.2	70	79	13	234	44	6	5	43	1.52
20707--20945	112	2.2	110	81	11	276	44	6	5	43	1.52
21198--21238	21	2.0	21	85	9	57	41	0	2	56	1.13
32370--32412	18	2.4	18	88	0	59	23	6	0	69	1.12
39685--39754	7	9.1	7	74	20	52	1	30	0	68	0.98
39685--39754	15	4.5	15	73	16	54	1	30	0	68	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39685--39760	33	2.5	30	76	17	84	2	28	0	68	1.03
43461--43653	44	4.4	44	76	11	157	52	5	17	24	1.65
43470--43762	43	6.7	43	69	12	134	51	6	16	25	1.67
47136--47212	30	2.8	28	84	9	97	40	0	7	51	1.31
51798--51868	31	2.3	31	95	0	124	19	8	18	53	1.69
58073--58139	34	2.0	33	85	8	91	61	13	2	22	1.46
58788--58958	85	2.0	85	100	0	342	17	21	33	27	1.95
58928--59183	128	2.0	128	99	0	503	24	23	26	25	2.00
60591--60653	21	3.0	21	80	17	69	65	1	0	33	1.03
65632--65713	43	1.9	43	94	0	146	34	8	21	35	1.84
68234--68265	15	2.1	16	88	11	50	25	6	9	59	1.52
69739--69766	13	2.2	13	100	0	56	46	14	7	32	1.71
71882--71922	3	13.7	3	100	0	82	34	0	0	65	0.93
72398--72438	19	2.2	19	86	0	55	68	9	19	2	1.29
73333--73381	24	2.1	22	81	7	53	38	2	2	57	1.22
85059--85095	19	1.9	19	94	0	65	29	5	13	51	1.63
85958--86307	52	6.7	52	92	3	544	25	15	22	37	1.93
86885--87626	116	6.6	111	89	5	978	36	13	20	29	1.91
87762--87823	3	20.7	3	100	0	124	33	0	0	66	0.92
88286--88340	19	2.8	19	72	2	56	69	9	21	0	1.16
95198--95260	17	3.7	17	97	0	108	15	34	28	20	1.94
95796--96014	117	1.9	118	86	4	320	51	5	12	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95984--96040	26	2.4	22	74	20	69	54	10	8	26	1.63
95990--96047	26	2.2	27	93	3	100	58	10	8	22	1.58
96520--96587	2	34.5	2	97	2	129	51	0	0	48	1.00
97307--97392	39	2.2	39	85	4	111	60	18	15	5	1.54
99104--99213	38	2.9	37	75	14	91	41	12	11	33	1.80
99370--99490	58	2.0	62	85	10	171	43	8	15	32	1.76
103733--103782	24	2.0	24	85	11	66	42	0	6	52	1.26
105527--105621	19	5.0	19	80	0	100	44	5	18	31	1.72
106148--106191	17	2.6	17	100	0	88	43	0	4	52	1.22
106463--106499	16	2.4	16	90	4	58	48	0	2	48	1.15
116159--116192	2	17.0	2	100	0	68	50	0	0	50	1.00
120107--120405	150	2.0	150	93	0	508	33	24	17	24	1.96
121794--121916	28	4.5	28	76	11	128	20	24	20	34	1.96
121768--121888	54	2.2	54	89	0	188	20	23	22	33	1.97
121922--122063	73	1.9	73	91	0	230	35	17	19	27	1.95
122062--122128	28	2.4	29	85	7	102	28	25	17	28	1.98
122056--122185	28	4.6	28	71	8	93	29	22	17	30	1.97
124822--124851	9	3.2	9	95	4	51	70	0	0	30	0.88
125367--125432	30	2.2	30	100	0	132	28	6	22	42	1.77
127310--127340	16	1.9	16	93	0	53	38	3	3	54	1.32
132644--132687	21	2.0	22	86	4	63	40	9	9	40	1.68
138900--138932	17	1.9	17	100	0	66	48	30	9	12	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140137--140192	20	2.5	23	86	11	73	33	19	21	25	1.97
141187--141247	23	2.7	23	86	0	95	18	27	27	26	1.98
145812--145870	23	2.6	23	94	0	109	15	23	28	32	1.95
147044--147122	37	2.1	37	100	0	158	46	10	21	21	1.80
149317--149356	19	2.1	19	100	0	80	55	10	5	30	1.54
154454--154539	42	2.0	41	84	4	109	43	13	13	29	1.83

Tables:   1

The End!