genome.fa.s1422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001422.1 Hibiscus syriacus cultivar Beakdansim tig00002760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109779

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5424--5458	6	5.8	6	93	0	61	34	31	2	31	1.73
10959--11038	39	2.1	39	83	4	99	21	41	6	31	1.78
22907--22936	15	2.0	15	93	0	51	26	16	13	43	1.85
27980--28027	2	24.0	2	100	0	96	50	0	0	50	1.00
29543--29591	22	2.2	22	100	0	98	22	36	18	22	1.95
37622--37748	10	12.2	10	73	11	85	59	17	11	11	1.61
37605--37661	23	2.4	24	88	2	80	61	21	8	8	1.52
37606--37742	53	2.5	53	83	5	159	57	18	12	11	1.64
37696--37752	19	2.9	20	89	5	89	57	10	14	17	1.64
42645--42696	21	2.5	21	81	3	61	38	19	25	17	1.93
43334--43479	19	8.1	19	71	17	105	12	23	19	44	1.84
43356--43454	33	3.0	33	90	1	153	11	24	22	42	1.85
43420--43479	20	3.0	20	75	18	61	13	23	18	45	1.84
45624--45690	21	3.2	21	66	6	55	23	35	20	19	1.95
45572--45690	42	2.8	42	81	5	107	22	36	18	22	1.95
47045--47080	14	2.6	14	95	0	63	30	0	25	44	1.54
47187--47239	19	2.8	19	91	0	88	47	18	20	13	1.82
47248--47374	33	3.9	32	86	8	184	14	22	19	44	1.86
47241--47370	66	2.0	66	96	0	242	15	21	19	43	1.87
47244--47374	19	7.7	19	64	23	85	13	22	19	44	1.86
49383--49434	21	2.5	21	87	3	70	38	17	23	21	1.93
49461--49510	20	2.5	20	76	0	64	40	20	18	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49724--49791	20	3.4	20	72	8	75	39	23	20	16	1.91
49708--49811	40	2.9	34	77	15	109	40	22	22	15	1.91
49823--49876	14	3.5	14	77	22	63	11	20	20	48	1.80
49805--49875	33	2.2	33	84	0	88	19	19	21	39	1.93
51466--51525	21	2.9	20	73	11	59	20	13	45	21	1.85
51890--52022	20	7.5	18	70	21	84	43	20	20	15	1.88
51949--52036	14	5.6	14	69	21	59	48	19	17	14	1.81
51932--52054	33	3.8	33	90	2	185	46	21	17	13	1.83
52050--52113	19	3.7	18	74	21	73	14	21	20	43	1.87
52634--52678	18	2.5	18	88	0	72	17	15	40	26	1.90
53990--54046	20	2.8	20	86	0	69	43	21	17	17	1.88
54312--54355	22	2.0	22	95	0	79	18	15	45	20	1.85
54523--54638	20	5.7	21	76	10	82	23	17	22	37	1.94
54527--54636	41	2.7	41	84	4	143	23	17	22	36	1.95
54584--54637	20	2.7	20	91	0	90	25	18	22	33	1.97
54523--54640	61	1.9	62	84	5	159	22	16	22	38	1.93
54708--54748	21	2.0	21	85	0	55	34	29	17	19	1.94
59662--59701	18	2.2	18	86	0	53	35	10	32	22	1.87
60526--60590	2	32.5	2	96	0	121	49	1	0	49	1.10
60581--60877	37	8.2	36	78	12	263	45	4	6	44	1.47
60736--60803	29	2.3	30	85	7	95	47	7	2	42	1.46
60768--60879	36	3.1	38	80	5	115	44	6	5	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60702--60877	67	2.6	66	84	8	210	45	5	4	44	1.46
60663--60937	103	2.7	102	79	10	298	46	4	4	45	1.40
60843--60936	29	3.2	28	80	10	82	46	3	3	46	1.34
60955--60985	2	16.0	2	93	6	55	48	0	0	51	1.00
61209--61238	16	1.9	15	93	6	51	20	40	26	13	1.89
62137--62185	14	3.6	13	79	15	55	22	4	2	71	1.13
69034--69071	14	2.5	16	83	12	53	73	13	2	10	1.19
69966--70001	10	3.6	10	84	0	54	50	0	0	50	1.00
69964--70012	20	2.4	20	96	3	89	48	0	0	51	1.00
73654--73685	2	16.5	2	93	6	57	50	0	0	50	1.00
80705--80775	34	2.1	35	81	7	83	52	1	5	40	1.34
85000--85032	16	2.0	17	88	5	50	33	21	18	27	1.96
85011--85054	21	2.1	21	87	8	63	27	22	22	27	1.99
92154--92814	182	3.6	180	86	4	941	43	13	16	26	1.85
93237--93343	19	5.6	19	68	10	74	45	2	16	34	1.62
93181--93337	77	2.0	77	88	0	233	43	4	15	36	1.68
95316--95354	18	2.2	18	95	0	69	53	0	38	7	1.30
96820--96865	19	2.4	19	92	0	74	30	2	8	58	1.40
97242--98334	199	5.5	199	93	0	1765	41	15	14	28	1.86
98682--98739	15	3.7	15	81	6	62	24	46	0	29	1.53
99878--99911	6	5.7	6	89	0	50	44	2	32	20	1.67
101265--101311	24	2.0	24	86	0	67	31	2	17	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101561--102503	198	4.8	200	87	4	1291	43	17	13	26	1.85
101545--102503	394	2.4	392	89	5	1404	43	16	13	26	1.85
101561--102723	198	5.9	196	83	6	1170	41	17	13	27	1.86
102195--102763	194	2.9	196	80	7	482	39	16	14	29	1.89

Tables:   1

The End!