genome.fa.s1423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001423.1 Hibiscus syriacus cultivar Beakdansim tig00002762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97847

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533--1571	20	1.9	20	84	5	51	66	0	2	30	1.05
8677--8708	11	2.9	11	95	0	55	46	0	9	43	1.35
12369--12410	14	2.9	15	82	7	50	9	38	0	52	1.34
13204--13241	15	2.6	14	88	8	58	21	7	23	47	1.77
13624--13669	22	2.1	22	92	4	76	28	34	21	15	1.94
13884--13957	24	3.1	24	96	0	130	14	24	8	52	1.69
14272--14331	21	2.8	22	82	2	68	25	20	26	28	1.99
15206--15246	16	2.6	16	96	0	73	24	29	4	41	1.75
18291--18360	34	2.1	32	86	5	95	22	31	14	31	1.94
18642--18684	21	2.0	21	90	0	68	27	25	20	25	1.99
18790--18872	21	4.2	21	76	19	79	15	30	31	22	1.95
18818--18847	15	2.0	15	100	0	60	13	26	33	26	1.93
18797--18868	36	2.0	36	88	0	108	16	27	31	23	1.96
18964--19022	28	2.0	31	90	9	97	42	16	6	33	1.75
19180--19228	21	2.3	21	86	6	73	34	4	8	53	1.50
20300--20347	19	2.5	20	82	3	62	29	12	6	52	1.63
21207--21276	34	2.1	32	86	5	95	22	30	15	31	1.95
21491--21530	21	1.9	22	90	10	66	12	10	40	37	1.77
21558--21600	21	2.0	21	90	0	68	27	25	20	25	1.99
21636--21675	21	1.9	21	100	0	80	17	25	45	12	1.83
21713--21789	20	4.1	20	79	16	92	14	27	35	23	1.93
21714--21783	35	2.0	35	91	0	113	15	27	32	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21734--21763	15	2.0	15	100	0	60	13	26	33	26	1.93
21879--21937	29	2.0	31	93	6	104	44	16	5	33	1.70
24679--24766	39	2.3	39	78	7	97	19	20	25	35	1.96
25529--25599	29	2.4	29	81	9	81	40	5	19	33	1.75
27487--27527	17	2.4	17	95	0	73	9	31	31	26	1.89
29345--29369	11	2.3	11	100	0	50	16	24	24	36	1.94
29872--29907	2	18.0	2	94	0	63	47	0	2	50	1.15
32119--32158	16	2.5	16	95	0	71	40	25	2	32	1.69
32828--32875	23	2.1	23	88	0	69	35	12	18	33	1.89
33302--33364	23	2.7	23	87	0	90	38	19	4	38	1.73
33787--33872	39	2.2	39	91	0	136	18	15	18	47	1.82
34130--34166	18	2.1	18	89	0	56	51	10	5	32	1.60
34601--34663	23	2.7	23	92	0	99	38	20	4	36	1.74
35009--35074	25	2.6	25	80	0	87	42	13	9	34	1.76
38681--38761	3	27.0	3	75	0	72	23	34	6	35	1.80
38685--38773	12	7.4	12	84	0	88	21	34	7	35	1.82
38685--38776	18	5.1	18	77	0	76	20	34	7	36	1.81
38697--38773	36	2.1	36	90	0	118	20	35	9	35	1.85
38685--38776	6	15.3	6	79	0	67	20	34	7	36	1.81
40234--41190	199	4.8	198	96	0	1738	31	15	15	36	1.90
41299--41344	18	2.5	17	86	13	65	58	10	2	28	1.43
41299--41346	19	2.6	19	93	3	80	58	10	2	29	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43136--43201	33	2.0	33	90	0	105	22	48	0	28	1.51
43234--43298	21	3.1	21	79	0	76	16	30	13	38	1.88
45515--45557	20	2.3	18	85	14	61	20	16	11	51	1.75
45520--45566	20	2.4	19	82	10	67	19	17	10	53	1.72
45703--45749	20	2.3	20	89	10	78	17	17	10	55	1.69
45487--45961	183	2.6	181	89	2	693	26	16	14	42	1.86
45487--45976	182	2.7	181	86	4	664	26	16	14	42	1.87
46028--46510	230	2.1	229	94	0	860	40	7	7	44	1.61
51919--51954	17	2.2	17	95	5	65	33	5	5	55	1.46
54264--54465	2	106.0	2	64	19	58	49	2	2	45	1.30
54263--54358	9	11.1	9	66	29	50	50	2	2	45	1.25
54321--54398	28	2.7	30	80	9	90	46	3	3	46	1.39
54374--54401	13	2.2	13	100	0	56	46	7	7	39	1.59
54808--54858	8	6.4	8	97	0	93	25	13	25	35	1.93
55534--55592	14	4.2	14	77	0	55	52	25	0	22	1.47
55521--55588	21	3.2	21	76	0	73	51	30	0	17	1.46
55918--55964	4	11.8	4	86	0	67	0	21	51	27	1.48
55918--55974	8	7.1	8	91	0	69	0	17	50	31	1.46
56346--56395	15	3.2	15	89	10	82	54	6	0	40	1.25
56342--56395	17	3.4	17	87	12	87	53	5	0	40	1.24
56470--56541	28	2.6	28	84	2	83	50	25	0	25	1.50
56494--56547	14	3.9	14	80	0	63	50	27	0	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56714--56760	14	3.7	14	71	26	50	51	4	0	44	1.21
56712--56761	23	2.1	24	96	3	93	48	4	0	48	1.20
56982--57027	16	2.9	16	90	0	65	43	13	17	26	1.85
58439--58479	20	2.1	20	86	4	57	43	4	12	39	1.63
59262--59416	31	5.0	31	92	3	224	40	21	17	21	1.92
62229--62273	21	2.4	18	77	22	56	53	2	2	42	1.25
69622--69653	4	8.0	4	100	0	64	50	25	0	25	1.50
70890--70960	21	3.5	21	82	3	92	28	21	14	36	1.92
70931--71023	41	2.3	39	78	14	107	34	22	10	32	1.89
70944--71010	20	3.3	20	80	12	82	31	22	11	34	1.90
70953--71018	20	3.3	19	81	10	69	31	22	12	33	1.91
71958--72011	24	2.2	24	83	0	63	24	12	20	42	1.87
74151--74185	6	5.8	6	86	0	52	60	20	2	17	1.49
74152--74192	18	2.3	18	95	0	73	56	24	2	17	1.53
74367--74409	19	2.2	20	84	12	54	44	23	16	16	1.86
74401--74444	20	2.2	20	91	0	70	31	20	15	31	1.94
74457--74514	20	2.9	20	84	5	73	22	15	18	43	1.88
74603--74634	14	2.3	14	94	0	55	50	15	0	34	1.45
74545--74699	78	2.0	78	92	0	256	50	16	1	30	1.55
76056--76131	21	3.6	21	83	0	107	21	18	35	25	1.95
76058--76154	42	2.3	42	83	0	122	27	13	34	24	1.93
78667--78709	22	2.0	21	86	8	61	20	18	41	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78813--78850	20	2.0	20	84	5	51	44	13	15	26	1.83
84347--84646	157	1.9	155	92	2	487	32	18	13	35	1.90
86597--86924	43	7.6	42	77	12	285	47	9	16	26	1.76
86609--86924	44	7.3	44	75	11	257	47	9	16	26	1.77
86598--86931	129	2.6	127	84	9	419	48	8	16	26	1.75
86598--87011	129	3.2	130	80	9	325	49	8	16	26	1.74
86714--87065	44	8.1	44	74	14	162	52	7	14	25	1.66
88032--88334	168	1.8	168	94	0	543	37	22	16	23	1.93

Tables:   1

The End!