genome.fa.s1424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001424.1 Hibiscus syriacus cultivar Beakdansim tig00002763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72261

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5388--5441	28	1.9	28	85	7	74	44	5	9	40	1.60
17349--17401	25	2.2	24	86	10	72	56	5	3	33	1.41
21611--21800	103	1.8	103	87	4	285	33	17	18	30	1.94
21700--21886	86	2.2	86	86	1	259	36	18	16	28	1.92
22462--22496	18	1.9	18	88	0	52	22	37	8	31	1.85
23010--23113	37	2.8	37	84	5	129	42	12	12	32	1.80
23710--23794	29	2.9	29	73	14	68	30	3	3	62	1.29
23776--23822	19	2.5	19	82	0	58	31	4	0	63	1.13
23771--23827	21	2.6	22	83	5	71	29	3	0	66	1.08
23748--23841	22	4.4	21	71	10	73	30	3	1	64	1.16
23792--23857	27	2.8	24	84	13	75	24	3	0	72	0.98
23792--23855	12	5.5	11	75	21	51	23	3	0	73	0.97
23800--23857	14	4.4	12	75	16	53	24	3	0	72	1.00
28290--28354	15	4.2	16	75	13	73	83	6	10	0	0.82
28303--28357	19	2.9	19	76	15	60	81	5	12	0	0.84
28290--28361	13	4.9	13	79	15	54	81	5	12	0	0.84
28290--28354	16	4.2	14	83	13	67	83	6	10	0	0.82
28296--28360	9	7.5	8	76	19	60	83	4	12	0	0.80
29958--31445	106	14.0	106	93	0	2377	34	25	18	22	1.96
32193--32296	37	2.8	37	85	0	136	40	15	13	30	1.86
32936--33043	11	9.8	11	72	15	64	30	2	0	65	1.13
32906--32992	28	2.9	31	77	18	76	29	2	3	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32999--33057	26	2.3	26	77	16	68	28	3	0	67	1.06
39161--39219	23	2.6	23	83	0	73	22	23	23	30	1.99
39327--39407	39	2.1	37	80	13	85	32	4	22	40	1.75
43524--43549	2	13.0	2	100	0	52	0	0	50	50	1.00
45899--46003	45	2.3	46	88	1	149	33	17	19	30	1.94
46050--46087	20	1.9	20	100	0	76	21	15	31	31	1.94
55576--55613	2	19.0	2	100	0	76	50	0	0	50	1.00
58874--58910	15	2.4	16	78	17	51	56	2	0	40	1.13
58874--58943	31	2.3	31	80	4	72	55	2	1	40	1.23
66814--66857	21	2.1	22	83	8	56	56	9	25	9	1.59
68749--69305	112	5.0	111	88	5	756	45	13	15	26	1.83
68749--69305	221	2.5	220	88	4	791	45	13	15	26	1.83
69190--69634	178	2.5	175	84	8	553	43	11	15	28	1.82
71310--71378	30	2.3	29	83	9	86	55	4	1	39	1.29

Tables:   1

The End!