genome.fa.s1426.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001426.1 Hibiscus syriacus cultivar Beakdansim tig00002771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  202343

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4622--4668	2	23.5	2	100	0	94	51	0	0	48	1.00
5406--5440	18	1.9	18	94	0	61	25	0	0	74	0.82
5985--6029	14	3.3	14	81	12	58	35	0	0	64	0.94
5985--6029	22	2.0	22	87	8	65	35	0	0	64	0.94
5994--6037	22	2.0	21	86	8	61	31	0	2	65	1.05
7299--7337	21	1.9	20	84	5	51	15	12	2	69	1.30
10321--10386	12	5.2	12	79	15	71	81	3	15	0	0.80
10312--10386	38	2.0	37	89	5	116	80	4	16	0	0.87
11335--11384	3	17.3	3	76	15	52	34	0	0	66	0.92
12652--12693	19	2.2	19	83	8	50	19	11	2	66	1.34
15576--15613	18	2.1	18	90	0	58	21	10	36	31	1.87
21424--21461	19	2.0	19	89	0	58	7	7	7	76	1.17
25042--25076	19	1.9	17	88	11	52	31	5	0	62	1.18
26630--26682	21	2.5	22	80	17	60	5	15	33	45	1.69
27023--27081	10	6.1	10	88	7	79	61	1	0	37	1.07
27023--27081	15	4.1	15	85	12	79	61	1	0	37	1.07
27054--27091	19	2.0	19	89	0	58	63	5	0	31	1.17
27113--27175	22	2.9	22	100	0	126	41	9	4	44	1.58
27152--27565	35	11.5	35	83	7	422	41	10	3	44	1.55
27139--27565	212	2.0	215	84	5	562	41	10	3	44	1.55
27152--27606	37	12.6	36	78	9	257	42	9	3	44	1.54
28171--28291	40	3.2	39	68	21	114	21	19	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28160--28384	72	3.1	72	90	1	344	20	19	25	34	1.96
39096--39131	17	2.2	17	90	5	56	69	0	8	22	1.15
39361--39440	21	3.8	21	88	3	108	1	16	37	45	1.55
39762--39834	5	16.8	4	76	19	51	68	1	1	28	1.06
39762--39815	17	3.1	18	84	15	69	70	0	1	27	0.98
39762--39805	9	4.8	9	83	11	54	72	0	2	25	0.96
39774--39846	14	5.1	14	82	14	62	65	2	0	31	1.06
39777--39829	17	3.2	17	85	15	60	66	1	0	32	1.03
39777--39832	19	2.8	19	79	15	60	66	1	0	32	1.03
39852--40181	35	9.3	35	79	8	276	44	8	3	44	1.49
39832--40148	105	3.0	103	82	10	329	45	8	2	43	1.48
39844--40180	72	4.8	71	80	9	343	44	8	2	44	1.49
41097--41154	10	5.6	10	78	8	62	72	1	1	24	1.03
41097--41154	21	2.7	21	79	12	64	72	1	1	24	1.03
41097--41158	11	5.9	11	76	16	60	70	1	1	25	1.05
41224--41286	29	2.1	30	82	8	76	53	1	3	41	1.26
42283--42351	31	2.2	32	86	5	95	24	5	5	63	1.39
42293--42350	20	2.8	20	80	10	55	24	3	6	65	1.33
44495--44551	12	4.8	12	81	10	64	52	0	0	47	1.00
44504--44551	25	1.9	26	87	8	73	52	0	0	47	1.00
46310--46347	18	2.2	16	90	9	58	63	0	0	36	0.95
47484--47518	14	2.6	14	90	4	54	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50443--50486	15	2.9	15	89	3	61	20	20	27	31	1.97
51883--51923	19	2.2	19	100	0	82	36	9	26	26	1.88
53912--53972	21	2.9	20	79	18	54	1	18	1	78	0.91
53915--53972	8	7.4	7	80	14	53	1	17	1	79	0.90
55175--55216	16	2.7	16	92	3	68	28	23	16	30	1.96
55767--55806	2	20.0	2	100	0	80	50	0	0	50	1.00
56199--56228	14	2.1	14	100	0	60	40	13	0	46	1.43
56266--56322	18	2.9	19	87	12	89	29	10	12	47	1.74
56520--56594	21	3.9	20	71	26	72	28	28	18	25	1.98
56523--56612	36	2.5	36	96	0	162	23	31	20	25	1.98
56592--56630	20	2.0	20	89	0	60	17	38	17	25	1.92
56659--56688	15	2.0	15	93	0	51	20	36	26	16	1.93
56760--56816	21	2.7	21	88	2	87	22	29	22	24	1.99
60923--61112	64	3.0	60	82	8	193	26	15	26	31	1.96
61033--61079	17	2.7	17	86	3	67	23	17	34	25	1.96
61093--61132	21	1.9	21	89	0	62	22	12	30	35	1.91
64010--64199	64	3.0	60	82	8	193	26	15	26	31	1.96
64120--64166	17	2.7	17	86	3	67	23	17	34	25	1.96
64180--64219	21	1.9	21	89	0	62	22	12	30	35	1.91
67083--67293	64	3.3	63	81	4	201	28	15	25	31	1.95
67274--67313	21	1.9	21	94	0	71	22	15	30	32	1.94
69839--69918	24	3.5	23	73	14	85	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69817--69938	44	2.8	42	74	15	113	24	21	27	27	1.99
75714--75762	19	2.7	17	84	9	53	26	18	30	24	1.98
75713--75923	64	3.3	63	82	5	212	27	15	25	31	1.96
75842--75890	19	2.7	18	84	9	64	24	16	34	24	1.95
75904--75943	21	1.9	21	85	10	55	27	15	25	32	1.95
82599--82641	21	2.0	21	90	4	68	30	30	23	16	1.96
87755--87797	21	2.1	20	87	12	61	58	18	9	13	1.62
105982--106045	32	2.0	32	100	0	128	53	15	3	28	1.57
111509--111578	22	3.5	20	74	16	54	31	11	25	31	1.91
111987--112282	45	6.6	44	84	5	364	37	11	23	27	1.89
111987--112282	134	2.2	135	84	6	386	37	11	23	27	1.89
111996--112282	90	3.2	89	91	3	443	36	11	24	27	1.90
118654--118732	26	3.0	26	96	0	140	31	21	10	36	1.87
119864--119921	27	2.2	26	79	14	66	70	3	8	17	1.26
130401--130433	16	2.1	16	100	0	66	36	6	33	24	1.80
130943--131012	19	3.5	20	79	12	81	30	15	24	30	1.96
131420--131668	45	5.6	45	89	3	389	38	10	24	26	1.87
131420--131668	88	2.8	90	90	3	389	38	10	24	26	1.87
133693--133735	20	2.2	20	91	0	68	53	13	11	20	1.71
138344--138409	27	2.4	27	89	0	96	33	22	10	33	1.89
156198--156255	5	11.4	5	79	20	59	18	22	0	58	1.39
156198--156259	26	2.4	26	89	7	92	19	20	0	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159848--159881	10	3.4	10	95	0	59	73	14	11	0	1.10
170815--170846	12	2.4	14	90	10	50	62	0	0	37	0.95
172334--172359	11	2.4	11	100	0	52	61	0	0	38	0.96
173238--173307	20	3.2	23	86	10	71	24	27	21	27	1.99
173225--173297	20	3.7	20	92	3	121	26	26	20	27	1.99
173225--173307	40	2.1	40	90	0	130	25	26	21	26	2.00
173314--173364	19	2.7	20	84	9	70	27	29	15	27	1.96
179862--179958	18	5.5	18	83	4	119	30	12	14	42	1.82
179844--179958	35	3.3	35	86	3	151	31	13	13	41	1.83
179840--179958	53	2.2	53	82	5	134	31	13	12	42	1.81
181637--181675	9	4.8	8	82	17	53	61	0	0	38	0.96
181633--181675	16	2.6	17	76	23	56	60	0	0	39	0.97
182706--182747	19	2.0	20	86	13	59	47	4	2	45	1.36
191736--191762	12	2.2	12	100	0	54	18	7	14	59	1.58
197513--197665	36	4.3	36	89	5	213	36	23	20	19	1.95
197517--197665	71	2.1	72	87	5	214	36	23	20	20	1.95
197524--197681	36	4.4	36	87	6	205	39	20	20	18	1.93
197896--198137	51	4.8	51	86	4	298	32	20	26	21	1.98
197895--198131	101	2.4	101	84	7	313	32	20	26	21	1.97
198137--198554	108	3.9	108	90	2	646	29	14	27	27	1.95
198135--198521	215	1.8	214	94	1	695	29	14	28	28	1.95
199361--199432	28	2.6	28	95	2	128	18	43	12	26	1.85

Tables:   1

The End!