genome.fa.s1427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001427.1 Hibiscus syriacus cultivar Beakdansim tig00002772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88772

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224--264	21	2.0	21	85	9	57	29	2	21	46	1.64
13345--13497	77	2.0	78	81	12	181	43	9	5	41	1.61
14735--14782	3	15.7	3	91	4	78	31	2	0	66	1.03
14738--14783	22	2.1	22	95	0	83	30	2	0	67	1.03
20507--20559	24	2.3	23	87	9	74	43	0	3	52	1.19
23635--23699	21	3.1	21	70	18	64	38	20	13	27	1.90
26976--27009	13	2.6	13	90	0	50	26	5	8	58	1.51
27199--27239	22	1.9	22	85	5	57	24	17	14	43	1.86
32209--32292	43	1.9	44	85	2	116	28	16	22	32	1.96
37774--37799	13	2.0	13	100	0	52	38	7	46	7	1.61
48233--48384	39	3.9	38	77	6	135	32	21	25	20	1.98
50690--50746	20	2.8	20	78	5	62	24	36	8	29	1.86
50886--51843	483	2.0	481	91	2	1555	31	16	16	36	1.90
55032--55085	2	28.0	2	88	7	85	48	0	0	51	1.00
55777--55801	2	12.5	2	100	0	50	52	0	0	48	1.00
56362--56400	2	19.5	2	100	0	78	51	0	0	48	1.00
62172--62227	24	2.3	24	93	0	94	46	7	14	32	1.71
63023--63132	41	2.7	40	88	4	166	18	19	25	37	1.94
63048--63120	20	3.6	20	74	3	74	10	20	27	41	1.86
63068--63132	20	3.2	21	73	6	62	16	20	29	33	1.95
63165--63388	41	5.5	39	94	2	297	19	18	24	38	1.93
62994--63270	142	2.0	142	94	1	493	20	21	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63165--63436	82	3.3	82	91	1	420	19	18	23	38	1.93
63165--63436	123	2.2	124	90	3	424	19	18	23	38	1.93
63506--63559	6	9.5	6	95	4	87	35	46	18	0	1.50
64045--64121	10	7.2	10	94	5	93	0	19	53	27	1.46
64045--64121	15	4.8	16	92	7	97	0	19	53	27	1.46
64045--64121	6	14.4	5	95	4	93	0	19	53	27	1.46
64196--64260	21	3.1	21	75	4	78	38	26	18	16	1.92
69626--69672	23	2.0	23	95	0	85	61	6	12	19	1.52
72797--72848	20	2.6	20	82	14	63	34	13	19	32	1.90
76334--76371	19	2.0	19	89	0	58	31	0	10	57	1.32
77067--77114	25	1.9	25	83	8	62	27	12	0	60	1.32
81999--82051	24	2.2	24	83	6	63	28	0	15	56	1.39
85208--85244	2	18.5	2	100	0	74	51	0	0	48	1.00
88535--88594	20	3.3	20	65	29	62	28	0	26	45	1.54
88532--88599	33	2.1	33	100	0	136	27	0	27	44	1.55

Tables:   1

The End!