Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001428.1 Hibiscus syriacus cultivar Beakdansim tig00002773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85273

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1489--1570
22
3.7
22
80
13
87
23
29
26
20
1.99
1489--1551
23
2.7
23
85
4
83
22
30
25
22
1.99
6193--6249
22
2.5
22
80
8
53
33
3
3
59
1.31
24153--24201
2
24.5
2
100
0
98
48
0
0
51
1.00
28774--28866
41
2.2
42
86
1
125
31
20
18
30
1.96
28850--28883
17
2.0
17
94
0
59
23
26
11
38
1.89
32740--32855
51
2.2
52
84
1
144
49
9
3
37
1.52
35689--35750
29
2.2
28
88
8
90
19
6
14
59
1.56
36380--36413
18
1.9
18
88
5
52
26
29
26
17
1.98
41463--41547
43
2.0
43
97
0
161
43
21
5
29
1.76
44371--44432
24
2.6
22
76
14
61
41
0
4
53
1.22
45150--45202
20
2.5
21
87
9
72
56
16
11
15
1.67
49431--49460
15
2.0
15
93
0
51
0
56
0
43
0.99
60148--60523
191
2.0
192
87
2
551
28
16
17
37
1.92
60340--60776
213
2.0
215
87
2
621
27
16
16
39
1.90
62203--62430
51
4.6
51
81
6
279
38
22
23
16
1.93
62200--62383
96
1.9
96
93
0
314
38
21
23
16
1.93
64145--64207
32
2.0
32
87
0
90
19
9
31
39
1.83
64445--64497
25
2.1
25
100
0
106
32
3
9
54
1.50
64820--64879
18
3.3
19
71
17
56
43
1
0
55
1.10
64960--65003
16
2.8
15
76
10
52
4
15
36
43
1.68
66451--66497
20
2.3
20
96
0
85
12
10
23
53
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71766--71790
12
2.1
12
100
0
50
76
0
0
24
0.80
73432--73530
3
33.0
3
79
0
108
58
0
1
40
1.05
73428--73524
24
4.0
24
89
1
140
55
0
1
43
1.06
73561--73680
2
60.0
2
98
0
204
50
3
0
46
1.18
76533--76590
29
2.0
29
100
0
116
34
24
31
10
1.89
77051--77114
29
2.2
29
82
2
74
43
7
10
37
1.69
77977--78032
20
2.8
20
97
0
103
25
30
10
33
1.90
78281--78305
12
2.1
12
100
0
50
36
8
32
24
1.84
85081--85133
22
2.3
24
84
9
67
32
1
3
62
1.24
85111--85160
21
2.5
20
78
15
57
36
2
2
60
1.20
85119--85160
22
2.0
21
90
4
66
38
2
2
57
1.25

Tables:   1

The End!