genome.fa.s143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000143.1 Hibiscus syriacus cultivar Beakdansim tig00000258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79360

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2167--2192	2	13.0	2	100	0	52	50	0	0	50	1.00
6037--6108	35	2.1	35	91	0	117	30	31	9	27	1.89
8473--8554	37	2.2	37	84	4	103	37	32	8	20	1.83
8483--8558	37	2.1	37	92	0	125	34	30	9	26	1.87
11538--11564	13	2.1	13	100	0	54	25	22	14	37	1.93
17585--17617	17	1.9	17	93	0	57	57	0	9	33	1.30
18871--18922	3	17.3	3	87	0	77	59	5	0	34	1.21
26433--26527	32	2.9	33	77	11	81	42	27	12	17	1.86
29879--29955	37	2.1	36	82	2	91	50	7	5	36	1.54
30012--30062	23	2.2	24	96	3	95	56	0	15	27	1.39
31443--31513	31	2.3	31	80	4	81	45	15	4	35	1.66
34366--34406	18	2.2	19	86	4	57	60	0	9	29	1.28
34372--34413	17	2.3	18	84	8	50	61	2	9	26	1.39
34554--34588	16	2.2	16	89	0	52	65	5	11	17	1.43
35109--35351	121	2.0	121	99	0	477	32	26	17	23	1.97
36196--36264	3	22.7	3	79	8	77	65	0	0	34	0.93
36487--36787	132	2.3	134	87	4	439	24	16	32	26	1.96
36816--36963	28	4.8	29	72	21	99	45	14	16	23	1.84
37062--37364	29	9.8	30	71	17	180	43	13	13	29	1.82
37276--37352	28	2.6	30	83	8	95	44	10	10	35	1.73
37303--37364	32	2.0	32	90	3	99	41	9	12	35	1.76
37439--37501	32	1.9	33	83	3	83	42	9	15	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37533--37670	62	2.2	62	86	3	186	42	13	12	31	1.82
37592--37774	100	1.8	101	86	5	271	40	12	13	33	1.82
37769--37854	30	2.9	28	74	8	73	41	10	19	27	1.84
38156--38265	36	3.1	35	87	6	159	37	10	19	32	1.86
38992--39037	4	11.5	4	100	0	92	26	0	23	50	1.50
40355--40458	12	8.0	12	70	24	52	3	10	8	76	1.12
40353--40393	20	2.0	20	85	4	55	2	9	7	80	0.99
40378--40404	11	2.5	11	100	0	54	7	7	7	77	1.12
40399--40464	17	4.2	16	73	21	59	3	15	7	74	1.17
40395--40498	46	2.2	49	81	13	119	3	14	8	73	1.22
41974--42353	205	1.9	204	82	3	476	24	21	20	33	1.97
44284--44324	18	2.2	19	86	4	57	60	0	9	29	1.28
44290--44331	17	2.3	18	84	8	50	61	2	9	26	1.39
44466--44500	16	2.2	16	89	0	52	65	5	11	17	1.43
47216--47273	20	2.6	22	89	10	84	24	22	20	32	1.98
48593--48644	3	17.0	3	80	11	61	63	0	1	34	1.06
51717--51768	24	2.2	24	82	6	61	50	9	21	19	1.76
54252--54370	57	2.1	57	86	9	163	41	16	22	19	1.90
54252--54370	28	4.2	28	89	7	161	41	16	22	19	1.90
54317--54503	71	2.6	71	80	5	198	37	21	19	20	1.94
54463--54543	42	1.9	42	92	0	135	48	22	12	17	1.80
54663--54790	40	3.1	40	81	3	148	32	20	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55735--56148	43	9.7	43	79	4	408	27	21	18	32	1.97
55736--56045	128	2.4	129	87	0	424	27	20	18	33	1.96
55735--56148	128	3.2	126	82	4	422	27	21	18	32	1.97
66082--66107	6	4.3	6	100	0	52	15	0	15	69	1.20
68738--68781	19	2.3	19	92	0	70	38	4	25	31	1.76
74373--74447	29	2.6	29	91	0	114	22	16	17	44	1.87
74373--74494	29	4.2	29	81	4	104	19	20	18	41	1.90
74445--74519	29	2.6	29	85	4	89	16	28	16	40	1.89
74421--74528	29	3.7	29	77	4	85	17	23	18	40	1.91
76846--76890	19	2.3	19	84	3	54	28	4	8	57	1.48
78462--78500	20	2.0	20	94	0	69	28	10	30	30	1.90
78998--79088	23	4.0	23	81	2	94	32	24	24	18	1.97

Tables:   1

The End!