genome.fa.s1430.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001430.1 Hibiscus syriacus cultivar Beakdansim tig00002776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76494

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2299--2401	50	2.0	51	88	1	154	33	25	8	33	1.86
2186--2470	134	2.1	138	84	4	364	32	22	9	35	1.86
6415--6537	63	2.0	63	90	0	192	35	18	21	24	1.95
12002--12072	36	1.9	37	97	2	135	52	2	0	45	1.15
12006--12081	36	2.1	36	87	4	109	53	1	1	43	1.17
12056--12109	23	2.3	23	78	6	56	51	1	3	42	1.30
13651--13815	84	2.0	82	86	4	233	30	17	16	35	1.92
13721--14111	123	3.2	123	87	0	559	27	18	14	39	1.89
16851--16892	20	2.2	19	87	8	59	16	4	0	78	0.91
19114--19138	12	2.1	12	100	0	50	24	8	8	60	1.52
20533--20595	25	2.4	28	82	10	80	34	3	4	57	1.36
20953--21015	31	2.0	34	81	12	80	53	3	1	41	1.26
22002--22168	31	5.5	31	89	1	239	34	12	8	43	1.74
23076--23192	52	2.2	52	80	5	128	41	14	22	22	1.90
23216--23246	14	2.2	14	100	0	62	12	32	22	32	1.92
27842--27891	20	2.5	20	84	9	66	50	2	4	44	1.32
32403--32428	2	13.0	2	100	0	52	50	0	0	50	1.00
35012--35037	2	13.0	2	100	0	52	50	0	0	50	1.00
35686--36113	20	21.2	20	79	13	404	41	23	19	15	1.89
36209--36253	6	7.5	6	100	0	90	33	51	15	0	1.44
36759--36785	6	4.5	6	100	0	54	0	14	51	33	1.43
36888--37087	20	9.8	20	85	11	273	16	20	27	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36881--37168	40	7.1	40	83	9	320	15	19	23	40	1.90
36881--37168	20	14.2	20	77	14	222	15	19	23	40	1.90
37301--37376	40	1.9	39	97	2	134	56	14	3	25	1.55
42096--42144	25	2.0	25	84	8	64	55	2	2	40	1.23
45515--45574	24	2.5	24	97	2	113	43	15	18	23	1.87
45819--45877	12	4.6	12	76	12	55	15	1	3	79	0.94
45855--45956	24	4.3	24	70	19	63	23	3	1	70	1.14
46020--46048	13	2.2	13	100	0	58	41	6	0	51	1.28
50072--50200	36	3.6	34	81	11	141	26	20	13	39	1.89
50097--50493	36	11.2	36	73	16	319	27	19	12	39	1.88
50125--50415	101	2.9	101	90	1	438	28	19	12	39	1.88
50347--50493	78	1.9	79	89	1	233	23	21	15	39	1.91
50516--50659	36	4.0	36	83	1	182	27	16	11	45	1.81
52478--52560	14	5.7	15	68	17	50	20	4	1	73	1.08
56233--56266	18	1.9	18	88	5	52	50	0	20	29	1.49
57118--57208	31	3.0	31	96	3	168	32	6	17	42	1.75
57426--57467	21	2.0	21	95	0	75	23	21	28	26	1.99
57496--57535	20	1.9	21	85	10	55	37	37	10	15	1.80
57749--57818	34	2.1	32	86	5	95	32	15	30	21	1.94
58372--58441	12	5.8	12	76	6	52	15	11	18	54	1.71
58349--58443	24	4.0	24	77	2	93	18	12	17	50	1.77
59640--59703	27	2.4	25	75	17	67	51	1	1	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59862--59930	25	2.6	27	78	21	83	42	4	0	53	1.20
59850--59933	27	3.4	25	82	14	95	42	3	0	53	1.18
59916--59955	21	2.0	21	85	5	55	40	0	0	60	0.97
64050--64154	24	4.1	26	76	15	78	42	5	0	51	1.25
64080--64137	22	2.5	23	86	10	75	39	6	0	53	1.28
64305--64366	31	2.0	31	90	0	97	50	11	9	29	1.70
65586--65634	21	2.3	21	92	0	80	24	4	16	55	1.59
65640--65686	24	2.0	23	83	8	58	40	4	0	55	1.19
65661--65719	21	2.6	23	80	17	70	40	3	0	55	1.16
65714--65753	15	2.7	15	96	0	71	37	0	0	62	0.95
65727--65783	20	2.9	19	79	7	69	40	1	1	56	1.20
65907--65974	31	2.2	31	86	0	91	48	10	8	32	1.68
66934--67179	129	1.9	129	88	3	370	39	16	10	32	1.83
71086--71111	2	13.0	2	100	0	52	50	0	0	50	1.00
71089--71143	10	5.6	10	82	8	53	38	9	0	52	1.33
72664--72848	50	3.7	50	85	7	232	50	13	10	25	1.73
72666--72848	102	1.8	101	85	3	260	50	13	10	25	1.73

Tables:   1

The End!