Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001431.1 Hibiscus syriacus cultivar Beakdansim tig00002779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92040

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1869--1912
18
2.4
18
82
17
56
36
6
0
56
1.26
11396--11436
16
2.5
17
80
11
50
60
0
0
39
0.96
13346--13427
2
41.0
2
100
0
164
50
0
0
50
1.00
16050--16098
15
3.3
15
85
2
64
6
24
12
57
1.58
16242--16289
22
2.2
22
85
7
62
18
0
8
72
1.08
19086--19169
5
16.8
5
96
0
132
3
40
38
17
1.67
19167--19203
6
6.2
6
100
0
74
0
16
48
35
1.46
19196--19228
15
2.2
15
100
0
66
18
15
33
33
1.92
24120--24173
5
10.8
5
93
0
72
5
40
37
16
1.72
24171--24234
6
10.7
6
96
0
110
3
17
48
31
1.62
24512--24566
22
2.5
22
75
0
56
29
9
23
38
1.85
29941--29979
19
2.1
19
85
9
53
46
7
12
33
1.71
30189--30248
21
2.9
20
82
5
75
28
26
20
25
1.99
33102--33167
32
2.2
29
83
8
78
39
7
7
45
1.61
33136--33193
28
2.1
28
87
6
82
39
8
12
39
1.73
33281--33349
31
2.3
29
87
5
93
33
15
11
39
1.84
37604--37663
31
2.0
30
86
3
84
23
23
8
45
1.80
46917--46945
2
14.5
2
100
0
58
48
0
0
51
1.00
48874--48907
15
2.3
15
94
0
59
35
29
17
17
1.93
49387--49543
64
2.5
63
79
10
176
26
17
20
35
1.95
52118--52181
19
3.3
19
76
8
58
46
0
0
53
1.00
58156--58208
27
2.0
25
82
7
61
37
1
5
54
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66607--66649
20
2.2
20
91
0
68
32
11
20
34
1.89
77043--77068
13
2.0
13
100
0
52
30
0
0
69
0.89
82977--83037
29
2.1
29
87
0
86
32
9
26
31
1.89
83331--83372
22
1.9
22
90
9
68
45
0
4
50
1.23
83700--83732
17
1.9
17
93
0
57
42
3
0
54
1.15
85415--85489
35
2.1
35
85
4
98
33
14
34
17
1.90
85590--85660
28
2.4
29
75
11
74
52
0
0
47
1.00
90839--91284
190
2.3
187
83
4
552
40
20
13
25
1.89

Tables:   1

The End!