genome.fa.s1433.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001433.1 Hibiscus syriacus cultivar Beakdansim tig00002781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131977

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106--204	25	4.0	25	94	3	166	36	20	15	28	1.92
3431--3472	17	2.6	17	88	7	61	33	4	23	38	1.76
13464--13520	8	6.5	8	75	16	51	78	0	17	3	0.88
13455--13505	9	5.4	9	77	15	50	80	0	17	1	0.81
13455--13520	28	2.5	26	79	13	80	78	0	18	3	0.87
14467--14774	130	2.3	129	85	5	413	26	29	19	24	1.99
14963--15020	9	5.8	10	84	15	68	37	0	0	62	0.96
14963--15008	3	15.7	3	82	13	60	34	0	0	65	0.93
15137--15235	25	4.0	25	94	3	166	36	20	15	28	1.92
16863--16894	11	2.9	11	95	0	55	15	0	3	81	0.82
16858--16906	25	2.0	24	88	4	71	18	0	4	77	0.92
18415--18588	60	2.9	60	83	5	192	33	18	5	41	1.74
24763--24787	11	2.3	11	100	0	50	28	0	0	72	0.86
24920--24972	22	2.5	22	93	3	90	35	3	9	50	1.53
28208--28256	13	3.8	13	74	15	57	63	12	2	22	1.39
28212--28272	25	2.4	25	100	0	122	62	14	3	19	1.46
30553--30624	12	5.6	12	77	19	74	66	1	0	31	1.00
30553--30616	21	3.1	21	77	20	73	67	1	0	31	1.00
30554--30619	29	2.2	30	89	10	100	66	1	0	31	1.01
30590--30623	11	2.9	12	86	8	52	67	2	0	29	1.05
30631--30675	10	4.5	10	82	0	54	35	0	33	31	1.58
31277--31342	2	33.0	2	100	0	132	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31911--31950	16	2.6	16	88	4	55	25	2	2	70	1.13
36057--36103	24	2.0	24	88	8	71	38	6	23	31	1.80
42601--42677	33	2.3	33	81	0	91	15	28	28	27	1.96
46131--46255	21	6.0	21	83	4	148	27	26	24	22	2.00
46131--46255	41	3.0	41	86	4	162	27	26	24	22	2.00
46290--46332	22	1.9	23	90	4	70	20	20	32	25	1.97
46433--46491	28	2.0	31	90	9	97	42	15	6	35	1.73
49324--49383	29	2.0	29	87	12	86	43	16	6	33	1.74
52812--52861	20	2.5	20	100	0	100	32	24	20	24	1.98
52805--52922	61	1.9	62	82	5	150	38	22	16	22	1.92
52828--52922	41	2.3	41	85	0	136	37	23	16	22	1.93
52848--52922	21	3.6	21	74	3	71	40	22	16	21	1.91
53090--53133	22	2.0	22	95	0	79	20	45	15	18	1.85
53350--53387	20	1.9	20	88	0	58	13	15	21	50	1.78
54707--54751	18	2.5	18	81	0	54	28	40	15	15	1.88
55233--55299	20	3.4	20	81	2	73	38	23	22	14	1.92
55288--55345	14	3.9	14	79	16	71	48	24	17	10	1.78
55272--55362	32	2.8	33	94	3	166	47	21	18	12	1.81
55374--55471	18	5.8	18	70	26	79	13	18	21	46	1.82
55379--55471	33	2.8	33	93	1	152	13	18	21	46	1.84
55457--55499	20	2.2	20	87	4	61	18	23	20	37	1.94
55465--55511	20	2.3	20	88	0	67	14	21	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55876--55962	40	2.1	40	85	4	120	21	42	14	20	1.88
57378--57413	14	2.6	14	90	0	54	30	0	22	47	1.52
57539--57611	19	4.4	16	75	21	55	50	19	17	12	1.77
57549--57616	19	3.8	19	79	14	83	50	17	19	13	1.78
57657--57701	20	2.2	20	88	0	63	20	20	22	37	1.94
57664--57710	20	2.3	20	96	0	85	17	21	25	36	1.94
57924--58015	20	4.6	20	73	2	76	20	18	21	39	1.93
58000--58051	20	2.5	21	87	3	70	21	23	17	38	1.93
58248--58281	12	2.9	12	86	4	52	17	41	5	35	1.74
58837--58890	24	2.2	24	90	0	81	22	16	20	40	1.91
59065--59091	12	2.2	12	100	0	54	74	0	25	0	0.83
61363--61465	19	5.6	19	77	12	108	41	22	23	12	1.88
61455--61497	19	2.3	19	83	0	59	16	25	18	39	1.91
61462--61504	19	2.3	19	91	0	68	16	20	20	41	1.90
61611--61647	14	2.6	14	91	0	65	45	24	0	29	1.53
63005--63210	42	4.9	41	72	11	166	23	18	35	21	1.95
63035--63210	84	2.1	84	98	0	343	23	17	37	21	1.94
63429--63613	91	2.0	90	89	6	282	46	18	12	22	1.82
65216--65275	20	3.0	20	83	7	68	41	20	25	13	1.88
65747--65880	20	6.7	20	82	5	162	21	18	26	33	1.96
68341--68398	31	1.9	31	85	3	82	31	12	5	51	1.61
68335--68408	31	2.4	31	77	4	78	28	12	8	51	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74875--74924	25	2.0	25	84	0	64	34	18	18	30	1.94
77680--77719	20	2.0	20	85	0	53	32	37	0	30	1.58
78046--78095	17	3.1	17	73	26	63	20	4	24	52	1.63
87812--88029	103	2.1	103	93	0	364	27	13	21	37	1.91
88046--88111	23	2.9	23	88	0	87	22	24	25	27	2.00
93181--93224	20	2.3	19	81	11	54	25	27	6	40	1.80
93699--93785	44	2.0	44	95	0	156	50	8	3	37	1.49
95412--95502	3	30.0	3	88	2	137	38	0	0	61	0.96
96784--96817	11	3.0	11	91	4	50	29	2	0	67	1.05
105637--105713	22	3.5	22	87	0	109	35	15	9	40	1.79
106474--106667	45	4.3	45	88	0	280	28	20	18	31	1.96
106685--106798	45	2.5	45	92	2	183	27	20	21	30	1.98
106564--106864	121	2.5	121	92	0	494	28	20	19	31	1.97
106730--106946	76	2.9	76	91	1	357	27	19	19	33	1.96
106609--106964	197	1.8	197	91	0	586	27	20	19	32	1.97
107283--107317	18	1.9	18	94	0	61	40	0	0	60	0.97
108589--108622	11	3.0	11	91	4	50	32	2	0	64	1.08
108633--108672	2	20.0	2	84	0	53	57	0	0	42	0.98
110899--111341	239	1.9	233	89	5	685	28	13	17	40	1.88
123166--123190	12	2.1	12	100	0	50	36	16	8	40	1.77
124438--124463	13	2.0	13	100	0	52	23	23	23	30	1.99
126726--126782	21	2.8	21	86	2	71	24	19	31	24	1.98

Tables:   1

The End!