genome.fa.s1434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001434.1 Hibiscus syriacus cultivar Beakdansim tig00002782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120006

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3282--3346	24	2.8	23	79	4	85	32	26	24	16	1.96
3733--3783	20	2.4	21	81	15	61	33	15	0	50	1.44
4187--4327	64	2.2	64	79	5	151	25	24	18	31	1.97
7615--7765	30	5.0	30	79	4	160	60	6	13	19	1.54
7615--7765	62	2.5	60	81	3	169	60	6	13	19	1.54
9373--9406	3	11.7	3	87	6	52	64	0	0	35	0.94
10870--11031	30	5.4	30	81	3	184	60	7	13	18	1.56
10870--11031	61	2.7	60	82	3	193	60	7	13	18	1.56
12612--12637	3	8.7	3	100	0	52	65	0	0	34	0.93
19056--19085	14	2.1	14	93	0	51	50	13	3	33	1.58
19940--19996	28	2.0	28	100	0	114	31	21	17	29	1.96
21716--21764	14	3.4	14	75	5	53	44	4	16	34	1.66
21711--21765	29	1.9	28	92	3	92	47	3	16	32	1.64
22028--22079	27	2.0	27	84	3	70	51	0	5	42	1.25
22268--22352	26	3.5	25	71	16	63	44	1	1	52	1.16
22342--22388	22	2.1	23	88	4	69	53	0	2	44	1.12
22316--22392	32	2.4	34	80	12	90	49	0	2	48	1.15
22619--22710	41	2.2	41	94	1	157	47	18	15	18	1.82
22641--22730	41	2.3	38	81	7	92	50	15	15	18	1.79
29998--30042	21	2.1	21	87	0	63	31	28	24	15	1.96
30845--31000	31	5.0	31	93	1	251	19	19	23	37	1.94
34326--34369	21	2.1	21	86	0	61	31	27	25	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35171--35312	31	4.6	31	92	1	232	20	19	21	38	1.93
45009--45043	18	1.9	18	88	0	52	25	31	20	22	1.98
53006--53032	13	2.1	13	100	0	54	29	33	22	14	1.94
53839--54225	184	2.1	183	93	0	650	42	2	8	46	1.48
55197--55241	22	2.0	22	91	4	72	28	33	26	11	1.91
56536--56748	103	2.1	103	92	0	354	26	13	23	36	1.92
56765--56832	23	3.0	23	88	0	91	22	27	25	25	1.99
63352--63386	7	5.0	7	92	0	61	25	2	28	42	1.69
65368--65466	21	4.8	20	75	6	81	37	23	18	21	1.94
65433--65587	40	3.8	40	82	4	186	37	26	18	18	1.93
65433--65586	20	7.7	20	80	7	168	37	26	18	18	1.93
65968--66038	33	2.2	33	92	0	115	11	22	18	47	1.80
66117--66226	21	5.8	20	74	17	108	45	18	24	11	1.83
66110--66226	41	3.1	38	81	14	145	46	17	25	11	1.81
66177--66233	14	3.7	14	75	20	60	43	22	24	8	1.81
66169--66249	33	2.5	33	95	0	144	46	22	22	8	1.78
66245--66328	19	4.7	19	80	14	106	10	21	21	46	1.81
66286--66342	14	3.7	14	75	20	60	8	24	22	43	1.81
66267--66350	33	2.5	33	100	0	168	9	23	20	46	1.80
68046--68408	92	4.1	92	90	7	613	23	12	19	44	1.85
68213--68385	82	2.1	82	98	0	337	23	13	18	44	1.85
68474--68573	52	1.9	52	95	0	182	46	29	18	7	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68456--68589	71	1.9	72	92	1	225	46	29	16	8	1.76
68456--68589	19	7.3	19	85	9	179	46	29	16	8	1.76
68585--68719	19	7.6	19	75	16	128	11	19	23	45	1.82
68607--68663	14	3.7	14	77	20	60	10	21	22	45	1.82
68590--68682	33	2.8	33	95	0	168	10	20	21	47	1.80
70642--70676	13	2.6	14	90	4	54	31	0	22	45	1.53
70783--70880	19	5.4	19	84	13	143	45	17	22	14	1.84
70783--70899	53	2.2	53	96	1	218	43	17	24	13	1.86
70895--71010	38	3.2	35	89	6	119	16	19	17	46	1.84
70927--71110	19	10.4	19	79	17	227	14	21	17	46	1.83
70889--71082	90	2.2	85	89	5	289	15	22	17	45	1.85
71003--71057	14	3.6	14	73	21	56	10	23	20	45	1.82
70946--71143	67	2.9	67	88	6	265	13	21	19	45	1.84
70946--71124	33	5.2	33	89	7	261	13	21	18	46	1.83
73602--73648	24	2.0	24	87	8	69	38	21	14	25	1.92
74330--74600	20	13.5	20	84	2	292	19	16	24	39	1.92
74330--74600	40	6.8	40	88	3	330	19	16	24	39	1.92
74587--74669	21	4.0	21	73	6	78	25	16	24	33	1.96
74567--74665	42	2.4	43	77	11	100	21	18	23	37	1.94
79379--79435	14	3.9	15	82	15	66	24	1	0	73	0.92
79387--79451	30	2.2	30	83	5	78	26	4	0	69	1.08
79443--79486	23	1.9	23	85	0	61	22	15	6	54	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80420--80444	12	2.1	12	100	0	50	20	16	24	40	1.91
85869--85916	22	2.2	22	85	7	62	52	25	8	14	1.69
85913--85959	24	2.0	24	86	0	67	42	21	14	21	1.88
86965--87128	49	3.3	51	78	11	160	40	6	18	33	1.77
107602--107626	13	1.9	13	100	0	50	56	8	24	12	1.62

Tables:   1

The End!