Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001435.1 Hibiscus syriacus cultivar Beakdansim tig00002783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80381

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9998--10045
24
2.0
23
84
11
62
60
10
4
25
1.47
12585--12613
14
2.1
14
100
0
58
31
13
41
13
1.84
15673--15722
9
5.2
9
80
19
57
36
0
2
62
1.07
15669--15711
21
2.0
21
91
8
70
39
0
0
60
0.97
16503--16653
60
2.5
61
81
4
164
30
19
7
41
1.80
16809--16953
60
2.5
59
81
8
161
44
5
18
31
1.72
22819--22844
2
13.0
2
100
0
52
50
0
0
50
1.00
29268--29307
21
1.9
21
89
0
62
10
25
40
25
1.86
29289--29351
21
2.9
21
83
9
74
17
26
34
20
1.95
33140--33179
21
1.9
21
85
10
55
35
10
2
52
1.48
35622--35658
19
1.9
19
88
0
56
16
18
21
43
1.88
35706--35758
21
2.5
21
96
0
97
24
15
16
43
1.87
45319--45358
19
2.0
20
85
4
55
47
0
0
52
1.00
46043--46154
30
3.7
30
75
9
111
19
6
16
57
1.61
46160--46268
23
4.7
23
87
2
137
27
15
17
39
1.90
46165--46268
47
2.2
46
89
1
154
26
15
17
40
1.89
54789--54825
18
2.0
19
89
5
58
18
13
0
67
1.23
67397--67453
22
2.6
22
100
0
114
17
45
22
14
1.84
68346--68383
17
2.2
17
100
0
76
39
5
36
18
1.73
74444--74484
18
2.3
18
87
8
57
46
19
34
0
1.50
75290--75392
52
2.0
52
98
0
197
38
15
5
39
1.72

Tables:   1

The End!