genome.fa.s1436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001436.1 Hibiscus syriacus cultivar Beakdansim tig00002784_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149439

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8681--8724	22	2.0	22	81	0	52	63	4	4	27	1.33
13416--13500	22	3.8	22	81	7	75	21	27	29	22	1.99
13429--13489	22	2.7	22	85	9	79	21	27	29	21	1.98
18912--18941	12	2.5	12	88	0	51	73	6	16	3	1.18
20937--20966	12	2.4	13	88	11	53	36	0	6	56	1.26
21512--21553	17	2.4	18	92	4	68	71	0	4	23	1.05
22294--22335	20	2.0	21	86	13	61	66	0	28	4	1.12
22291--22336	18	2.6	18	75	21	51	63	0	32	4	1.14
23828--23867	19	2.1	19	85	0	53	27	2	7	62	1.35
27382--27430	23	2.2	22	92	3	80	53	0	4	42	1.20
30344--30385	17	2.4	17	77	14	50	45	0	2	52	1.13
33402--33483	42	2.0	42	83	9	105	28	18	17	36	1.93
33452--33734	85	3.3	84	78	5	250	28	15	20	34	1.94
33534--33810	129	2.1	128	81	8	312	28	15	20	34	1.94
33389--33811	43	9.9	44	70	9	234	28	16	20	35	1.94
36626--36684	2	30.0	2	96	3	111	50	0	0	49	1.00
37707--37745	20	2.0	20	90	5	62	58	5	0	35	1.20
38994--39150	3	51.7	3	88	2	233	62	1	1	34	1.14
39403--40175	113	6.8	113	97	0	1406	29	19	13	37	1.91
40804--41256	52	8.8	52	97	0	849	37	23	15	23	1.93
40804--41256	154	2.9	155	98	0	881	37	23	15	23	1.93
42185--42275	6	14.3	6	74	21	71	0	19	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42183--42260	32	2.4	33	86	4	122	0	20	0	79	0.73
53631--53669	20	2.0	20	90	5	62	58	5	0	35	1.20
54918--55075	3	52.7	3	89	2	246	63	1	1	33	1.13
57735--58008	129	2.1	129	82	6	315	33	20	16	29	1.94
57817--58267	44	10.2	44	75	5	354	32	21	17	28	1.96
57892--58230	87	3.8	86	75	9	223	33	20	16	29	1.95
59701--59785	40	2.2	38	89	4	125	28	10	11	49	1.72
60151--60191	19	2.2	19	95	0	73	29	29	4	36	1.78
60359--60437	31	2.5	32	82	8	83	29	17	15	37	1.90
60410--60467	24	2.5	24	91	2	91	24	20	18	36	1.95
63469--63551	34	2.4	34	97	0	157	48	4	4	42	1.45
64621--64655	6	5.8	6	96	0	61	0	48	0	51	1.00
66155--66209	24	2.3	24	100	0	110	21	25	21	30	1.98
65550--66839	654	2.0	655	94	1	2248	37	10	15	36	1.81
70490--70528	21	1.9	20	84	5	51	25	33	12	28	1.93
70671--70709	21	1.9	20	89	5	60	76	5	0	17	0.96
75430--75471	21	2.0	21	90	0	66	16	35	21	26	1.94
82555--82609	17	3.2	17	92	0	83	23	23	25	27	2.00
92742--92768	2	13.5	2	100	0	54	48	0	0	51	1.00
95507--95581	35	2.1	36	95	2	134	57	0	0	42	0.98
99010--99039	15	2.0	15	93	0	51	36	0	3	60	1.14
102547--102722	87	2.0	87	95	2	318	28	7	19	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103003--103055	21	2.5	21	87	0	79	20	24	20	33	1.97
103072--103131	20	3.0	20	92	0	102	25	28	21	25	1.99
103959--104012	24	2.2	24	93	0	90	20	18	20	40	1.91
106259--106289	12	2.6	12	94	0	53	48	29	6	16	1.70
106349--106618	140	1.9	140	97	0	513	28	12	15	42	1.84
106589--106827	20	12.9	20	68	15	145	35	22	17	25	1.95
106597--106751	54	2.9	54	88	1	231	35	24	16	23	1.95
106651--106826	74	2.4	74	79	3	194	34	22	17	25	1.96
106744--106876	54	2.5	54	86	3	171	34	20	20	24	1.96
107022--107083	14	4.3	14	77	6	61	46	14	0	38	1.45
107913--107990	20	3.9	20	78	6	95	26	20	20	32	1.97
108722--108755	15	2.2	16	89	5	52	23	2	2	70	1.15
108739--108792	20	2.7	21	74	5	58	29	1	0	68	1.00
110241--110297	21	2.7	21	78	10	62	36	22	22	17	1.94
112000--112063	27	2.3	28	81	7	78	42	14	23	20	1.88
114135--114295	86	1.9	86	82	7	202	27	1	12	57	1.45
114259--114298	20	2.0	20	85	9	55	27	0	20	52	1.46
115766--115803	18	2.1	18	100	0	76	21	13	15	50	1.78
117890--118094	110	1.9	110	82	4	261	39	8	8	43	1.65
121988--122083	31	3.1	31	84	3	113	39	13	7	39	1.72
123268--123320	2	26.5	2	100	0	106	50	0	0	49	1.00
130168--130242	2	37.5	2	94	0	132	48	0	2	49	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131024--131075	19	2.7	19	100	0	104	48	30	9	11	1.72
136206--136266	30	2.1	30	84	3	79	27	19	36	16	1.93
139643--139673	16	1.9	16	100	0	62	48	19	6	25	1.72

Tables:   1

The End!