Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001437.1 Hibiscus syriacus cultivar Beakdansim tig00002786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 149801
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:8127 original size:22 final size:22
Alignment explanation
Indices: 8102--8152 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
8092 CTACGGCGAC
*
8102 ATCCGTCCCCATCTCCGATGAA
1 ATCCGTCCCCATCTCCGACGAA
*
8124 ATCCGTCCCCATTTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
8146 ATCCGTC
1 ATCCGTC
8153 TATCTCCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.41, G:0.14, T:0.24
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:10164 original size:21 final size:21
Alignment explanation
Indices: 10140--10189 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
10130 GTTAGAGGAA
* *
10140 TTACGTGATGAGGTCGGTGCT
1 TTACGTGATGAAGTCGGTACT
*
10161 TTACGTCATGAAGTCGGTACT
1 TTACGTGATGAAGTCGGTACT
10182 TTACGTGA
1 TTACGTGA
10190 AGATAATAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (21 bp):
TTACGTGATGAAGTCGGTACT
Found at i:10635 original size:42 final size:42
Alignment explanation
Indices: 10588--10705 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
10578 GATGCACCTA
* * *
10588 TCATCATTCAAGAGGCGCCTCCTATCGTTCAAGAGGCCCCTC-
1 TCATCATTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCC-CG
* *
10630 TCATCA-TCGAAGAAGCCCCTCCCACCGTTTAAGAGGCCCCCG
1 TCATCATTC-AAGAGGCCCCTCCCACCGTTCAAGAGGCCCCCG
* * * *
10672 TCATCGTTCAAGAGGTCCCACCCGCCGTTCAAGA
1 TCATCATTCAAGAGGCCCCTCCCACCGTTCAAGA
10706 ACCCGATTCA
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
41 3 0.05
42 57 0.92
43 2 0.03
ACGTcount: A:0.23, C:0.37, G:0.19, T:0.20
Consensus pattern (42 bp):
TCATCATTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCCCG
Found at i:12124 original size:14 final size:14
Alignment explanation
Indices: 12105--12158 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
12095 TTTTGATTAA
12105 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
12119 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
** *
12133 TTGATTTGTTTAAT
1 TTGATTTGTAAAAG
12147 TTGATTTGTAAA
1 TTGATTTGTAAA
12159 TAAGAATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:12204 original size:80 final size:74
Alignment explanation
Indices: 12055--12207 Score: 207
Period size: 80 Copynumber: 2.0 Consensus size: 74
12045 TTTTACATTG
12055 AAAGTTGATTTGTTTAATTGATGAGGAAATAAGATTTATTTTTTGATTAATTGATTTGTAAAAGT
1 AAAGTTGATTTGTTTAATTGATGAGGAAATAAGATTTATTTTTTGATTAATTGATTTGTAAAAGT
12120 TGATTTGTA
66 TGATTTGTA
** * * *
12129 AAAGTTGATTTGTTTAATTTGATTTGTAAATAAGAATTATTTTTTTGTTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAA-TTGATGAGGAAATAAG----ATTTATTT-TTTGATTAATTGATTTGT
12194 AAAAGTTGATTTGT
60 AAAAGTTGATTTGT
12208 TGTTTCTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
74 17 0.25
75 13 0.19
79 7 0.10
80 31 0.46
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (74 bp):
AAAGTTGATTTGTTTAATTGATGAGGAAATAAGATTTATTTTTTGATTAATTGATTTGTAAAAGT
TGATTTGTA
Found at i:12543 original size:39 final size:39
Alignment explanation
Indices: 12489--12575 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
12479 TCAAGTTGTA
*
12489 GATTTTGATTTCCTTTTACTTGACACCATATGAGATTTT
1 GATTTTGATTTCCTTTTACTTGACACCATATGAGATTTG
* * *
12528 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTACTTGACACCATATGAGATTTG
12567 GATTTTGAT
1 GATTTTGAT
12576 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTACTTGACACCATATGAGATTTG
Found at i:12908 original size:18 final size:18
Alignment explanation
Indices: 12885--12921 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
12875 CAAAATTTAT
12885 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
12903 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
12921 A
1 A
12922 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:13324 original size:25 final size:25
Alignment explanation
Indices: 13296--13347 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
13286 CATTATTTTT
* *
13296 TTCAAATAATGTACCCATAACAATG
1 TTCAAATAATATACCCACAACAATG
13321 TTCAAATAATATACCCACAACAATG
1 TTCAAATAATATACCCACAACAATG
13346 TT
1 TT
13348 TAATTGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (25 bp):
TTCAAATAATATACCCACAACAATG
Found at i:13458 original size:34 final size:34
Alignment explanation
Indices: 13413--13493 Score: 153
Period size: 34 Copynumber: 2.4 Consensus size: 34
13403 TGTTGAAGGT
13413 AAATTCGCAACGCGAAATAAGCATTGCGATAGTC
1 AAATTCGCAACGCGAAATAAGCATTGCGATAGTC
*
13447 AAATTCACAACGCGAAATAAGCATTGCGATAGTC
1 AAATTCGCAACGCGAAATAAGCATTGCGATAGTC
13481 AAATTCGCAACGC
1 AAATTCGCAACGC
13494 TAAAGTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.20
Consensus pattern (34 bp):
AAATTCGCAACGCGAAATAAGCATTGCGATAGTC
Found at i:13506 original size:20 final size:20
Alignment explanation
Indices: 13481--13525 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
13471 TGCGATAGTC
*
13481 AAATTCGCAACGCTAAAGTA
1 AAATTCGCAACGCGAAAGTA
* *
13501 AAATTCGCATCGCGAAAGTC
1 AAATTCGCAACGCGAAAGTA
13521 AAATT
1 AAATT
13526 TGGTTTGCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (20 bp):
AAATTCGCAACGCGAAAGTA
Found at i:13563 original size:20 final size:20
Alignment explanation
Indices: 13538--13601 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
13528 GTTTGCGATT
*
13538 TCGCGTTGTGAATTTGACTA
1 TCGCGTTGCGAATTTGACTA
*
13558 TCGCGTTGCGAATTT-ATCTT
1 TCGCGTTGCGAATTTGA-CTA
*
13578 TCGGGTTGCGAATTTGACTA
1 TCGCGTTGCGAATTTGACTA
13598 TCGC
1 TCGC
13602 AACGCTTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (20 bp):
TCGCGTTGCGAATTTGACTA
Found at i:16225 original size:24 final size:24
Alignment explanation
Indices: 16191--16244 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
16181 CCATCACATC
16191 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
16215 ATCAAAGTCCGGGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
16239 ATCAAA
1 ATCAAA
16245 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:17185 original size:20 final size:20
Alignment explanation
Indices: 17160--17299 Score: 58
Period size: 20 Copynumber: 7.0 Consensus size: 20
17150 TTGCAAAATT
17160 AAATTCGCGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
* * *
17180 AAATTC-AGTTACAAATTTG
1 AAATTCGCGTTGCGAATTTG
* *
17199 -ACTATCGCGTTGCAAATTTGG
1 AAAT-TCGCGTTGCGAATTT-G
**
17220 AAAATT-GCAATGCG-ATTT-
1 -AAATTCGCGTTGCGAATTTG
* *
17238 ACATATTCGCGTTGCCAAATTGG
1 A-A-ATTCGCGTTG-CGAATTTG
* * *
17261 AAACT-GGGTTGCGAAATTG
1 AAATTCGCGTTGCGAATTTG
* *
17280 GAATTCTCGTTGCGAATTTG
1 AAATTCGCGTTGCGAATTTG
17300 TTGGTCATTT
Statistics
Matches: 84, Mismatches: 24, Indels: 24
0.64 0.18 0.18
Matches are distributed among these distances:
17 1 0.01
18 3 0.04
19 23 0.27
20 40 0.48
21 9 0.11
22 5 0.06
23 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (20 bp):
AAATTCGCGTTGCGAATTTG
Found at i:19164 original size:9 final size:9
Alignment explanation
Indices: 19152--19207 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
19142 ATTCTTATCA
19152 TCATCCTCC
1 TCATCCTCC
19161 TCAT-CT--
1 TCATCCTCC
*
19167 TCATCGTCC
1 TCATCCTCC
19176 TCATCCTCC
1 TCATCCTCC
*
19185 TCTTCCTCC
1 TCATCCTCC
* *
19194 TCCTCCTCG
1 TCATCCTCC
19203 TCATC
1 TCATC
19208 ATCACTCTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 4 0.11
7 1 0.03
8 2 0.05
9 31 0.82
ACGTcount: A:0.09, C:0.50, G:0.04, T:0.38
Consensus pattern (9 bp):
TCATCCTCC
Found at i:19191 original size:15 final size:15
Alignment explanation
Indices: 19158--19210 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
19148 ATCATCATCC
* *
19158 TCCTCATCTTCATCG
1 TCCTCATCCTCCTCG
*
19173 TCCTCATCCTCCTCT
1 TCCTCATCCTCCTCG
*
19188 TCCTCCTCCTCCTCG
1 TCCTCATCCTCCTCG
*
19203 TCATCATC
1 TCCTCATC
19211 ACTCTCAACA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.09, C:0.49, G:0.04, T:0.38
Consensus pattern (15 bp):
TCCTCATCCTCCTCG
Found at i:21747 original size:23 final size:23
Alignment explanation
Indices: 21721--21765 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21711 CACCACAGCT
*
21721 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* *
21744 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
21766 ATATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:22003 original size:149 final size:149
Alignment explanation
Indices: 21746--22047 Score: 559
Period size: 149 Copynumber: 2.0 Consensus size: 149
21736 AAGTGCCCCG
* *
21746 TAGAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACGTAGAATTCTTTAAGAATCA
1 TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAATCA
21811 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
66 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
21876 TATGTCCCGAAGAACCGCA
131 TATGTCCCGAAGAACCGCA
21895 TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAATCA
1 TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAATCA
*
21960 TATACATATGCTAGGGATCAAGTATGTGTCTTTCTAGACTTCACACATGTTCCAAAGAATATACA
66 TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
* *
22025 TATGTCTCGAAGAACCGCG
131 TATGTCCCGAAGAACCGCA
22044 TAGA
1 TAGA
22048 CCCTCGACTC
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 148 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (149 bp):
TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAATCA
TATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATACA
TATGTCCCGAAGAACCGCA
Found at i:22893 original size:18 final size:18
Alignment explanation
Indices: 22870--22904 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22860 TCCCATCTAG
22870 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
22888 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
22905 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:23514 original size:21 final size:21
Alignment explanation
Indices: 23484--23528 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23474 ATTCTGTCGT
* *
23484 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
23505 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
23526 TTG
1 TTG
23529 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:24307 original size:14 final size:14
Alignment explanation
Indices: 24288--24318 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
24278 CAAAATTATT
24288 TAAATAAATTCAAA
1 TAAATAAATTCAAA
*
24302 TAAATAAATTCTAA
1 TAAATAAATTCAAA
24316 TAA
1 TAA
24319 TTTAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAATAAATTCAAA
Found at i:24582 original size:24 final size:24
Alignment explanation
Indices: 24528--24584 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
24518 AAATTAAAAT
* * *
24528 AATAATAAAATAATTAATTACTTA
1 AATAATAAAATAATTAATGAATAA
* **
24552 AACAATAAAATTTTTAATGAATAA
1 AATAATAAAATAATTAATGAATAA
24576 AATAATAAA
1 AATAATAAA
24585 TTATAAAAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAATAAAATAATTAATGAATAA
Found at i:24813 original size:19 final size:19
Alignment explanation
Indices: 24772--24818 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
24762 CAGGGGTATC
* *
24772 AGCGGTTTTATTGGATATC
1 AGCGGTTTTATCGGATATA
* *
24791 AGCGGTTTTATCGGGTGTA
1 AGCGGTTTTATCGGATATA
24810 AGCGGTTTT
1 AGCGGTTTT
24819 CGGCTAAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.17, C:0.11, G:0.32, T:0.40
Consensus pattern (19 bp):
AGCGGTTTTATCGGATATA
Found at i:28405 original size:60 final size:59
Alignment explanation
Indices: 28246--28416 Score: 157
Period size: 60 Copynumber: 2.8 Consensus size: 59
28236 TACCTTCTAT
* * *
28246 ATCCTTAAATTATGACTCTAATTCTAAATTGGTCACTAAACTTTTGAACATCCCAAATTC
1 ATCCCTAAATTATGACTCTAATTCTAAATTAGTC-CCAAACTTTTGAACATCCCAAATTC
* * * * * * *
28306 -TTCCTCAAATTATGATTC-ACATTCTTAATTGATTCCCAAATTTTTGAACATTCTAAATTC
1 ATCCCT-AAATTATGACTCTA-ATTCTAAATT-AGTCCCAAACTTTTGAACATCCCAAATTC
* * * *
28366 ATCCCTAAATTATAACCCTAATTCTAAATTAGTCTCCAAACATTTAAACAT
1 ATCCCTAAATTATGACTCTAATTCTAAATTAGTC-CCAAACTTTTGAACAT
28417 TCCTATAACA
Statistics
Matches: 86, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
59 7 0.08
60 72 0.84
61 7 0.08
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.38
Consensus pattern (59 bp):
ATCCCTAAATTATGACTCTAATTCTAAATTAGTCCCAAACTTTTGAACATCCCAAATTC
Found at i:34879 original size:187 final size:187
Alignment explanation
Indices: 34564--35313 Score: 1446
Period size: 187 Copynumber: 4.0 Consensus size: 187
34554 AAAGCAAAAC
34564 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
1 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
*
34629 TCGGCAAAATCATGTCAAAAAAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
66 TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
34694 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
131 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
34751 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
1 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
* *
34816 TCAGCAAAATCATGTCAAAATAATGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
66 TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
34881 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
131 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
*
34938 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGGCTTCTAGTACAGACAATAAA
1 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
*
35003 TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGTCTCCAACCCTTTTAA
66 TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
35068 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
131 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
35125 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
1 CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
*
35190 TCGGCAAAATCATGTCAAAATAACAGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
66 TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
35255 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
131 CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
35312 CA
1 CA
35314 CATATGAACA
Statistics
Matches: 553, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
187 553 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (187 bp):
CATGTACATTTGCTGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAA
TCGGCAAAATCATGTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAA
CGGTACAACTCTAATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTA
Found at i:35600 original size:15 final size:15
Alignment explanation
Indices: 35558--35603 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
35548 TCCAACAAGT
35558 TGATATATCTAAAAA
1 TGATATATCTAAAAA
* **
35573 TGTTA-ATAAAAAAA
1 TGATATATCTAAAAA
35587 TGATATATCTAAAAA
1 TGATATATCTAAAAA
35602 TG
1 TG
35604 GAAGAATCAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (15 bp):
TGATATATCTAAAAA
Found at i:37068 original size:20 final size:22
Alignment explanation
Indices: 37035--37086 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
37025 ACTAAAGTAA
37035 AAATT-ATATATTTTA-TTCTT
1 AAATTCATATATTTTATTTCTT
*
37055 AAATTCATAT-TTTTATTTTTTT
1 AAATTCATATATTTTA-TTTCTT
37077 AAATTCATAT
1 AAATTCATAT
37087 CTAAATTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 10 0.36
21 4 0.14
22 14 0.50
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.60
Consensus pattern (22 bp):
AAATTCATATATTTTATTTCTT
Found at i:37139 original size:32 final size:31
Alignment explanation
Indices: 37047--37139 Score: 87
Period size: 32 Copynumber: 2.8 Consensus size: 31
37037 ATTATATATT
**
37047 TTATTCTTAAATTCATATTTTTATTTTTTTAAA
1 TTATT-TTAAATTCATA-TTTTAAATTTTTAAA
* * *
37080 TTCATATCTAAATTCACATTTTTAATTTTTAAA
1 TT-AT-TTTAAATTCATATTTTAAATTTTTAAA
*
37113 TATATTTTAAATTCATATATTAAATTT
1 T-TATTTTAAATTCATATTTTAAATTT
37140 AATTCACATC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
32 18 0.38
33 17 0.35
34 12 0.25
35 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (31 bp):
TTATTTTAAATTCATATTTTAAATTTTTAAA
Found at i:37222 original size:10 final size:10
Alignment explanation
Indices: 37207--37231 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37197 AATATGTTTT
37207 TATTTTTATA
1 TATTTTTATA
37217 TATTTTTATA
1 TATTTTTATA
37227 TATTT
1 TATTT
37232 AAAAATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTTTTATA
Found at i:37283 original size:21 final size:23
Alignment explanation
Indices: 37242--37289 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
37232 AAAAATTATA
*
37242 TTAAAATAATAAGATATATGAAT
1 TTAAAATAATAAGAAATATGAAT
37265 TTAAAA-AATAA-AAATATGAAT
1 TTAAAATAATAAGAAATATGAAT
37286 TTAA
1 TTAA
37290 GACTGATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.54
22 5 0.21
23 6 0.25
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (23 bp):
TTAAAATAATAAGAAATATGAAT
Found at i:38055 original size:8 final size:7
Alignment explanation
Indices: 38042--38093 Score: 63
Period size: 8 Copynumber: 7.3 Consensus size: 7
38032 AATGAAAAAA
38042 ATAATAT
1 ATAATAT
38049 ATGAATAT
1 AT-AATAT
38057 AT-ATAT
1 ATAATAT
38063 ATATATAT
1 ATA-ATAT
38071 ATATATAT
1 ATA-ATAT
38079 ATAA-AT
1 ATAATAT
38085 ATAATAT
1 ATAATAT
38092 AT
1 AT
38094 GGTTATATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
6 12 0.29
7 7 0.17
8 22 0.54
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (7 bp):
ATAATAT
Found at i:38102 original size:2 final size:2
Alignment explanation
Indices: 38053--38093 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
38043 TAATATATGA
*
38053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38094 GGTTATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:38560 original size:20 final size:20
Alignment explanation
Indices: 38535--38574 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
38525 ATTTAGTTCG
38535 CCCCCAACATAAAATCATGC
1 CCCCCAACATAAAATCATGC
38555 CCCCCAACATAAAATCATGC
1 CCCCCAACATAAAATCATGC
38575 GTCCATCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.05, T:0.15
Consensus pattern (20 bp):
CCCCCAACATAAAATCATGC
Found at i:40687 original size:16 final size:17
Alignment explanation
Indices: 40666--40700 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
40656 TTACTATTCA
40666 CGTGAATAGTG-AATTT
1 CGTGAATAGTGAAATTT
40682 CGTGAATAGTGAAATTT
1 CGTGAATAGTGAAATTT
40699 CG
1 CG
40701 GTCGGCGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Found at i:41468 original size:15 final size:16
Alignment explanation
Indices: 41450--41482 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
41440 GTGGCAGATC
41450 AAAATCCAG-ACGGGA
1 AAAATCCAGAACGGGA
*
41465 AAAATCTAGAACGGGA
1 AAAATCCAGAACGGGA
41481 AA
1 AA
41483 GAAAGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAATCCAGAACGGGA
Found at i:44794 original size:36 final size:36
Alignment explanation
Indices: 44740--44812 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
44730 TGGCAACCGA
*
44740 CTTTGGAAAATGTTTTTTTCAAAGTTTGGTAAATATTT
1 CTTTGAAAAATG-TTTTTTCAAAGTTTGGTAAA-ATTT
44778 CTTTGAAAAATG-TTTTTCAAAGTTTGGTAAAATTT
1 CTTTGAAAAATGTTTTTTCAAAGTTTGGTAAAATTT
44813 TGGTAGATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 4 0.12
36 19 0.56
38 11 0.32
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.48
Consensus pattern (36 bp):
CTTTGAAAAATGTTTTTTCAAAGTTTGGTAAAATTT
Found at i:47719 original size:37 final size:37
Alignment explanation
Indices: 47678--47753 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
47668 TCATTTATTA
*
47678 TTTTATTTCCGTTTTGATCATTCAGTTATTATTTTTC
1 TTTTATTTCCGTTTTGATCATCCAGTTATTATTTTTC
**
47715 TTTTATTTTTGTTTTGATCATCCAGTTATTATTTTTC
1 TTTTATTTCCGTTTTGATCATCCAGTTATTATTTTTC
47752 TT
1 TT
47754 CTAAATTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.64
Consensus pattern (37 bp):
TTTTATTTCCGTTTTGATCATCCAGTTATTATTTTTC
Found at i:49253 original size:16 final size:16
Alignment explanation
Indices: 49220--49253 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49210 TTACTATTCA
* *
49220 CGTGAATAGTGAATTT
1 CGTGAATAGTAAAATT
49236 CGTGAATAGTAAAATT
1 CGTGAATAGTAAAATT
49252 CG
1 CG
49254 GTCGGCGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTAAAATT
Found at i:57334 original size:38 final size:39
Alignment explanation
Indices: 57282--57361 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
57272 AACTCACTCA
** **
57282 AAAATAATGAATCGATTTCATTGATTCTTTTATATACTT
1 AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
57321 AAAA-AATGAATCGATTTCATAAAAACTTTTATATACTT
1 AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
57359 AAA
1 AAA
57362 GTTTATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (39 bp):
AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
Found at i:63032 original size:21 final size:21
Alignment explanation
Indices: 63008--63075 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
62998 TAATAAAATA
63008 ATATATTATCGATGAATTTTT
1 ATATATTATCGATGAATTTTT
* * *
63029 ATATA-AAT-AATG-TTTATTT
1 ATATATTATCGATGAATT-TTT
63048 AAATATATTATCGATGAATTTTT
1 --ATATATTATCGATGAATTTTT
63071 ATATA
1 ATATA
63076 AATAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
18 2 0.06
19 6 0.17
20 2 0.06
21 15 0.43
22 2 0.06
23 6 0.17
24 2 0.06
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (21 bp):
ATATATTATCGATGAATTTTT
Found at i:63032 original size:42 final size:42
Alignment explanation
Indices: 62996--63081 Score: 120
Period size: 42 Copynumber: 2.1 Consensus size: 42
62986 TATATATTTA
62996 AATAATAAAAT-AATATATTATCGATGAATTTTTATATAAAT
1 AATAATAAAATAAATATATTATCGATGAATTTTTATATAAAT
** * **
63037 AATGTTTATTTAAATATATTATCGATGAATTTTTATATAAAT
1 AATAATAAAATAAATATATTATCGATGAATTTTTATATAAAT
63079 AAT
1 AAT
63082 TTTTATTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 6 0.15
42 33 0.85
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (42 bp):
AATAATAAAATAAATATATTATCGATGAATTTTTATATAAAT
Found at i:63084 original size:15 final size:15
Alignment explanation
Indices: 63022--63097 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 15
63012 ATTATCGATG
63022 AATTTTTATATAAAT
1 AATTTTTATATAAAT
* *
63037 AATGTTTATTTAAAT
1 AATTTTTATATAAAT
* **
63052 -A--TAT-TATCGAT
1 AATTTTTATATAAAT
63063 GAATTTTTATATAAAT
1 -AATTTTTATATAAAT
*
63079 AATTTTTATTTAAAT
1 AATTTTTATATAAAT
63094 AATT
1 AATT
63098 AAAATTTCAC
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
11 4 0.09
12 2 0.04
13 1 0.02
14 1 0.02
15 33 0.72
16 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (15 bp):
AATTTTTATATAAAT
Found at i:63087 original size:42 final size:42
Alignment explanation
Indices: 63007--63098 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
62997 ATAATAAAAT
63007 AATATATTATCGATGAATTTTTATATAAATAATGTTTATTTA
1 AATATATTATCGATGAATTTTTATATAAATAATGTTTATTTA
*
63049 AATATATTATCGATGAATTTTTATATAAATAATTTTTATTTA
1 AATATATTATCGATGAATTTTTATATAAATAATGTTTATTTA
63091 AATA-ATTA
1 AATATATTA
63099 AAATTTCACT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 4 0.08
42 45 0.92
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (42 bp):
AATATATTATCGATGAATTTTTATATAAATAATGTTTATTTA
Found at i:65667 original size:51 final size:51
Alignment explanation
Indices: 65586--65684 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
65576 TAGTTCTAAC
* * *
65586 GTTCCCCATCATCAGTACCCACAGCTGATAGTGATTACAAGGACCAAAGTA
1 GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAAGTA
* *
65637 GTTCTCCATCATCGGTACCAACAGCTGATAGTCATTACAACGACCAAA
1 GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAA
65685 ATAACATTGC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (51 bp):
GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAAGTA
Found at i:71112 original size:19 final size:19
Alignment explanation
Indices: 71088--71183 Score: 88
Period size: 19 Copynumber: 4.9 Consensus size: 19
71078 ATTTTAGGCA
71088 AAGAGTATTGATACTTTCC
1 AAGAGTATTGATACTTTCC
* * *
71107 AAGAGTATCGATACATTCT
1 AAGAGTATTGATACTTTCC
71126 AAGAGTA-TGTATACTTTCCCC
1 AAGAGTATTG-ATACTTT--CC
* *
71147 AATAGTATAT-ATATTTTCC
1 AAGAGTAT-TGATACTTTCC
*
71166 AAGAGTATCGATACTTTC
1 AAGAGTATTGATACTTTC
71184 AGCAACATAA
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
18 1 0.02
19 45 0.75
21 13 0.22
23 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGAGTATTGATACTTTCC
Found at i:76368 original size:2 final size:2
Alignment explanation
Indices: 76363--76405 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
76353 AAAAAATAGA
76363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76404 AT
1 AT
76406 TAAAACCGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:83090 original size:18 final size:18
Alignment explanation
Indices: 83045--83096 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
83035 TTACTATTAA
* *
83045 TATTTATTATTTTATTAT
1 TATTTATTTTTTTATAAT
*
83063 T-TTTCCTTTTTTTATAAT
1 TATTT-ATTTTTTTATAAT
*
83081 TATTTATTTTATTATA
1 TATTTATTTTTTTATA
83097 TCTTTTCAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTATTTTTTTATAAT
Found at i:86012 original size:16 final size:16
Alignment explanation
Indices: 85991--86041 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
85981 GGGAGGCAAC
85991 TCATTTCGTTTTATTT
1 TCATTTCGTTTTATTT
86007 TCATTTCGTTTTA-TT
1 TCATTTCGTTTTATTT
*
86022 TCATTTC-ATTTATTT
1 TCATTTCGTTTTATTT
86037 T-ATTT
1 TCATTT
86042 TTAATTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 8 0.24
15 12 0.36
16 13 0.39
ACGTcount: A:0.16, C:0.12, G:0.04, T:0.69
Consensus pattern (16 bp):
TCATTTCGTTTTATTT
Found at i:87741 original size:76 final size:75
Alignment explanation
Indices: 87651--87815 Score: 215
Period size: 76 Copynumber: 2.2 Consensus size: 75
87641 TAAACTCAAG
* *
87651 TTTAGGATAATATTTTAAACATTATATTTTTATCTTTA-TATTTTAGTTTAAATAGGTTTTAGTA
1 TTTAGGATATTATTTT-AACATTATATCTTTAT-TTTAGTATTTTAGTTTAAATAGGTTTTAGTA
*
87715 TTTTAATTAAGT
64 TTTTAATTAAGA
* * * *
87727 TTTAGGATATTATTTTTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTAT
1 TTTAGGATATTATTTTAACATTATATCTTTATTTTA-GTATTTTAGTTTAAATAGGTTTTAGTAT
*
87792 TTTAATTAGGA
65 TTTAATTAAGA
*
87803 TTTAGAATATTAT
1 TTTAGGATATTAT
87816 ATTATTTTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
74 4 0.05
75 11 0.14
76 63 0.81
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (75 bp):
TTTAGGATATTATTTTAACATTATATCTTTATTTTAGTATTTTAGTTTAAATAGGTTTTAGTATT
TTAATTAAGA
Found at i:92699 original size:5 final size:5
Alignment explanation
Indices: 92681--92730 Score: 59
Period size: 5 Copynumber: 10.2 Consensus size: 5
92671 ACTTACCTTG
* *
92681 AAATA AAA-A AAATA AAATA AAATTA AAATA AGATA ATA-A AAATA AAATA
1 AAATA AAATA AAATA AAATA AAA-TA AAATA AAATA AAATA AAATA AAATA
92730 A
1 A
92731 GAAAAATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
4 7 0.18
5 27 0.69
6 5 0.13
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:92700 original size:14 final size:14
Alignment explanation
Indices: 92681--92737 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
92671 ACTTACCTTG
92681 AAATAAAAAAAATA
1 AAATAAAAAAAATA
92695 AAATAAAATTAAAATA
1 AAATAAAA--AAAATA
* *
92711 AGATAATAAAAATA
1 AAATAAAAAAAATA
*
92725 AAATAAGAAAAAT
1 AAATAAAAAAAAT
92738 TATAATATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
14 25 0.68
16 12 0.32
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (14 bp):
AAATAAAAAAAATA
Found at i:92707 original size:11 final size:10
Alignment explanation
Indices: 92681--92730 Score: 59
Period size: 9 Copynumber: 5.1 Consensus size: 10
92671 ACTTACCTTG
92681 AAATAAAA-A
1 AAATAAAATA
92690 AAATAAAATA
1 AAATAAAATA
92700 AAATTAAAATA
1 AAA-TAAAATA
* *
92711 AGATAATA-A
1 AAATAAAATA
92720 AAATAAAATA
1 AAATAAAATA
92730 A
1 A
92731 GAAAAATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
9 15 0.44
10 10 0.29
11 9 0.26
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (10 bp):
AAATAAAATA
Found at i:92708 original size:19 final size:19
Alignment explanation
Indices: 92681--92735 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
92671 ACTTACCTTG
* *
92681 AAATAAAAAAAATAAAATA
1 AAATTAAAAAAAGAAAATA
* *
92700 AAATTAAAATAAGATAATA
1 AAATTAAAAAAAGAAAATA
* *
92719 AAAATAAAATAAGAAAA
1 AAATTAAAAAAAGAAAA
92736 ATTATAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (19 bp):
AAATTAAAAAAAGAAAATA
Found at i:92914 original size:25 final size:24
Alignment explanation
Indices: 92866--92919 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
92856 TTTTAAAAAC
* *
92866 TATATTATAATTTTTTTAAAACTA
1 TATATTACAATTTTTTCAAAACTA
*
92890 TATATTACATATTTTTTCAACACTA
1 TATATTACA-ATTTTTTCAAAACTA
92915 TATAT
1 TATAT
92920 ATATATACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (24 bp):
TATATTACAATTTTTTCAAAACTA
Found at i:92925 original size:24 final size:24
Alignment explanation
Indices: 92849--92925 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 24
92839 TATTTATAAT
92849 TATATA-TTTTTAAAAACTATAT-
1 TATATATTTTTTAAAAACTATATA
*
92871 TATA-ATTTTTTTAAAACTATATA
1 TATATATTTTTTAAAAACTATATA
* * *
92894 TTACATATTTTTTCAACACTATATA
1 -TATATATTTTTTAAAAACTATATA
92919 TATATAT
1 TATATAT
92926 ACACTGTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
21 1 0.02
22 19 0.41
24 9 0.20
25 17 0.37
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATATTTTTTAAAAACTATATA
Found at i:95212 original size:16 final size:16
Alignment explanation
Indices: 95186--95234 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
95176 AAAAAAGTCA
95186 AAAAGGTTGAAAAAGT
1 AAAAGGTTGAAAAAGT
*
95202 AAATA-GTTGAAAAAAGG
1 AAA-AGGTTG-AAAAAGT
95219 AAAAGGTTGAAAAAGT
1 AAAAGGTTGAAAAAGT
95235 TGAAAATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 14 0.50
17 14 0.50
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.18
Consensus pattern (16 bp):
AAAAGGTTGAAAAAGT
Found at i:95215 original size:17 final size:17
Alignment explanation
Indices: 95176--95232 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 17
95166 AAAAGAAAGA
95176 AAAAAAGTCAAAAAGGTTG
1 AAAAAAGT--AAAAGGTTG
95195 -AAAAAGTAAATA-GTTG
1 AAAAAAGTAAA-AGGTTG
*
95211 AAAAAAGGAAAAGGTTG
1 AAAAAAGTAAAAGGTTG
95228 AAAAA
1 AAAAA
95233 GTTGAAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 8 0.24
17 19 0.56
18 7 0.21
ACGTcount: A:0.61, C:0.02, G:0.21, T:0.16
Consensus pattern (17 bp):
AAAAAAGTAAAAGGTTG
Found at i:95235 original size:26 final size:26
Alignment explanation
Indices: 95206--95258 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
95196 AAAAGTAAAT
*
95206 AGTTGAAAAAAGG-AAAAGGTTGAAAA
1 AGTTG-AAAAAGGAAAAAAGTTGAAAA
*
95232 AGTTGAAAATGGAAAAAAGTTGAAAA
1 AGTTGAAAAAGGAAAAAAGTTGAAAA
95258 A
1 A
95259 CATTTAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (26 bp):
AGTTGAAAAAGGAAAAAAGTTGAAAA
Found at i:95247 original size:33 final size:33
Alignment explanation
Indices: 95186--95250 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
95176 AAAAAAGTCA
*
95186 AAAAGGTTGAAAAAGTAAATAGTTGAAAAAAGG
1 AAAAGGTTGAAAAAGTAAATAGTGGAAAAAAGG
95219 AAAAGGTTGAAAAAGTTGAAA-A-TGGAAAAAAG
1 AAAAGGTTGAAAAAG-T-AAATAGTGGAAAAAAG
95251 TTGAAAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 24 0.83
34 2 0.07
35 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (33 bp):
AAAAGGTTGAAAAAGTAAATAGTGGAAAAAAGG
Found at i:96667 original size:2 final size:2
Alignment explanation
Indices: 96662--96705 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
96652 TGTGTAAATA
*
96662 AT AT AT AT AT AT AT AT AT AT AT -T AT AT A- AT AT AT AC AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96701 AT AT A
1 AT AT A
96706 CCCGTATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
1 3 0.08
2 34 0.92
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97316 original size:86 final size:86
Alignment explanation
Indices: 97133--97811 Score: 703
Period size: 86 Copynumber: 8.0 Consensus size: 86
97123 CGACTTAAAC
* * * *
97133 TATGTTGTAAATTTGATGTGCCTTTGAGATGAGTGTAATCGAACTCGAAGGTC--TTGGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGG-TGACA
97196 GATAACCCTTCTCTCCTTGAGT
65 GATAACCCTTCTCTCCTTGAGT
* * *
97218 TATGCTGTAAATTGGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAT
1 TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAG
*
97283 ATAACCCTTCTCGCCTTGAGT
66 ATAACCCTTCTCTCCTTGAGT
* * * * * * * * *
97304 TATGATGCAAATTTGATATTCCTTTGAGATGAA-TGGAATCGAAATTGAAGGTATGTTGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCT-AAGTGTAATCGAACTCGAAGGTCTTTTGGTGACA
* *
97368 GATAACCCTTCTCGCCTTGAGC
65 GATAACCCTTCTCTCCTTGAGT
* * * *
97390 TATGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTTGAAGGTC--TTGGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGG-TGACA
* *
97453 GATAACCCTTCTCGCCTTAAG-
65 GATAACCCTTCTCTCCTTGAGT
* * * *
97474 T-T-ATG-----CTG--ATGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTTGGTGACAT
1 TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAG
*
97530 ACAACCCTTCTCTCCTTGAGT
66 ATAACCCTTCTCTCCTTGAGT
* * * * * *
97551 TATGCTGTAATTTTGATATACCTTTGAGCTGAA-TGTAATCGATCTCGAAGATCTTTTGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCT-AAGTGTAATCGAACTCGAAGGTCTTTTGGTGACA
*
97615 GATAGCCCTTCTCTCCTTGAGT
65 GATAACCCTTCTCTCCTTGAGT
* * * ** *
97637 TATGTTGTAAATTGGATATGCCTTAGAGCTGAA-TGTAATTAAACTCGAAGGTCTTTTGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCT-AAGTGTAATCGAACTCGAAGGTCTTTTGGTGACA
* *
97701 GATAGCCCTTCTCTCCTTGAGA
65 GATAACCCTTCTCTCCTTGAGT
* *
97723 TATGATGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC--TTGGTTGACA
1 TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGG-TGACA
* * * * *
97786 AATAGCTCTTCTTTCCTTGAGA
65 GATAACCCTTCTCTCCTTGAGT
97808 TATG
1 TATG
97812 CTGCTAATAT
Statistics
Matches: 502, Mismatches: 72, Indels: 40
0.82 0.12 0.07
Matches are distributed among these distances:
75 33 0.07
76 22 0.04
77 7 0.01
78 1 0.00
79 2 0.00
82 2 0.00
83 1 0.00
84 9 0.02
85 103 0.21
86 315 0.63
87 7 0.01
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (86 bp):
TATGATGTAAATTTGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGGTGACAG
ATAACCCTTCTCTCCTTGAGT
Found at i:97427 original size:172 final size:172
Alignment explanation
Indices: 97141--97777 Score: 780
Period size: 172 Copynumber: 3.8 Consensus size: 172
97131 ACTATGTTGT
* * * *
97141 AAATTTGATGTGCCTTTGAGATGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAACCCT
1 AAATTTGATATGCCTTTGAGATGAATGTAATCGAAATCGAAGGTCTTTTGTTGACAGATAACCCT
* *
97205 TCTCTCCTTGAGTTATGCTGTAAATTGGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGT
66 TCTCTCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
*
97270 CTTTTGGTGACATATAACCCTTCTCGCCTTGAGTTATGATGC
131 CTTTTGGTGACAGATAACCCTTCTCGCCTTGAGTTATGATGC
* * * * *
97312 AAATTTGATATTCCTTTGAGATGAATGGAATCGAAATTGAAGGTATGTTGTTGACAGATAACCCT
1 AAATTTGATATGCCTTTGAGATGAATGTAATCGAAATCGAAGGTCTTTTGTTGACAGATAACCCT
* * * *
97377 TCTCGCCTTGAGCTATGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTTGAAGGT
66 TCTCTCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
*
97442 C--TTGGTTGACAGATAACCCTTCTCGCCTTAAG-T-T-ATGC
131 CTTTTGG-TGACAGATAACCCTTCTCGCCTTGAGTTATGATGC
* * * * * * *
97480 -----TG--ATGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTTGGTGACATACAACCCT
1 AAATTTGATATGCCTTTGAGATGAATGTAATCGAAATCGAAGGTCTTTTGTTGACAGATAACCCT
* * * * *
97538 TCTCTCCTTGAGTTATGCTGTAATTTTGATATACCTTTGAGCTGAATGTAATCGATCTCGAAGAT
66 TCTCTCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
* * * * *
97603 CTTTTGTTGACAGATAGCCCTTCTCTCCTTGAGTTATGTTGT
131 CTTTTGGTGACAGATAACCCTTCTCGCCTTGAGTTATGATGC
* * * * *
97645 AAATTGGATATGCCTTAGAGCTGAATGTAAT-TAAACTCGAAGGTCTTTTGTTGACAGATAGCCC
1 AAATTTGATATGCCTTTGAGATGAATGTAATCGAAA-TCGAAGGTCTTTTGTTGACAGATAACCC
* * *
97709 TTCTCTCCTTGAGATATGATGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
65 TTCTCTCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
97774 TCTT
130 TCTT
97778 GGTTGACAAA
Statistics
Matches: 389, Mismatches: 62, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
161 101 0.26
162 23 0.06
163 6 0.02
164 1 0.00
165 2 0.01
168 4 0.01
169 1 0.00
170 6 0.02
171 64 0.16
172 181 0.47
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (172 bp):
AAATTTGATATGCCTTTGAGATGAATGTAATCGAAATCGAAGGTCTTTTGTTGACAGATAACCCT
TCTCTCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT
CTTTTGGTGACAGATAACCCTTCTCGCCTTGAGTTATGATGC
Found at i:97566 original size:75 final size:75
Alignment explanation
Indices: 97411--97566 Score: 199
Period size: 75 Copynumber: 2.1 Consensus size: 75
97401 TTTGATGTGC
** *
97411 CTTTGAGCTGAGTGTAATCGAACTTGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTT
1 CTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGACAACCCTTCTCGCCTTAAGTT
**
97476 ATGCTGATGC
66 ATGCTGATAA
* * *
97486 CTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTTGG-TGACATACAACCCTTCTCTCCTTGAG
1 CTTTGAGCTGAGTGTAATCGAACTCAAAGGTC--TTGGTTGACAGACAACCCTTCTCGCCTTAAG
97550 TTATGCTG-TAA
64 TTATGCTGATAA
*
97561 TTTTGA
1 CTTTGA
97567 TATACCTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 36 0.51
76 30 0.43
77 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (75 bp):
CTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGACAACCCTTCTCGCCTTAAGTT
ATGCTGATAA
Found at i:97814 original size:333 final size:332
Alignment explanation
Indices: 97151--97814 Score: 947
Period size: 333 Copynumber: 2.0 Consensus size: 332
97141 AAATTTGATG
* *
97151 TGCCTTTGAGATGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCTCCTTGA
1 TGCCTTTGAGATGAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGACAACCCTTCTCTCCTTGA
* *
97216 GTTATGCTGTAAATTGGATATGCCTTTGAGCTAAGTGTAATCGAACTCGAAGGTCTTTTGGTGAC
66 GTTATGCTGTAAATTGGATATACCTTTGAGCTAAGTGTAATCGAACTCGAAGATCTTTTGGTGAC
* * * *
97281 ATATAACCCTTCTCGCCTTGAGTTATGATGCAAATTTGATATTCCTTTGAGATGAATGGAATCGA
131 AGATAACCCTTCTCGCCTTGAGTTATGATGCAAATTGGATATGCCTTAGAGATGAATGGAATCGA
* * *
97346 AATTGAAGGTATGTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATGTGC
196 AATCGAAGGTATGTTGTTGACAGATAACCCTTCTCGCCTTGAGATATGATGTAAATTTGATGTGC
* * *
97411 CTTTGAGCTGAGTGTAATCGAACTTGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTT
261 CTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAAATAACCCTTCTCGCCTTAAGAT
97476 ATGCTGA
326 ATGCTGA
* *
97483 TGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTCTTTTGG-TGACATACAACCCTTCTCTCCTT
1 TGCCTTTGAGATGAGTGTAATCGAACTCAAAGGTC--TTGGTTGACAGACAACCCTTCTCTCCTT
* * * *
97547 GAGTTATGCTGTAATTTTGATATACCTTTGAGCTGAA-TGTAATCGATCTCGAAGATCTTTTGTT
64 GAGTTATGCTGTAAATTGGATATACCTTTGAGCT-AAGTGTAATCGAACTCGAAGATCTTTTGGT
* * * * * *
97611 GACAGATAGCCCTTCTCTCCTTGAGTTATGTTGTAAATTGGATATGCCTTAGAGCTGAATGTAAT
128 GACAGATAACCCTTCTCGCCTTGAGTTATGATGCAAATTGGATATGCCTTAGAGATGAATGGAAT
* * * * *
97676 -TAAACTCGAAGGTCTTTTGTTGACAGATAGCCCTTCTCTCCTTGAGATATGATGTAAATTTGAT
193 CGAAA-TCGAAGGTATGTTGTTGACAGATAACCCTTCTCGCCTTGAGATATGATGTAAATTTGAT
* * ** *
97740 GTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAAATAGCTCTTCTTTCCTTG
257 GTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAAATAACCCTTCTCGCCTTA
97805 AGATATGCTG
322 AGATATGCTG
97815 CTAATATTTC
Statistics
Matches: 292, Mismatches: 36, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
332 36 0.12
333 250 0.86
334 6 0.02
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (332 bp):
TGCCTTTGAGATGAGTGTAATCGAACTCAAAGGTCTTGGTTGACAGACAACCCTTCTCTCCTTGA
GTTATGCTGTAAATTGGATATACCTTTGAGCTAAGTGTAATCGAACTCGAAGATCTTTTGGTGAC
AGATAACCCTTCTCGCCTTGAGTTATGATGCAAATTGGATATGCCTTAGAGATGAATGGAATCGA
AATCGAAGGTATGTTGTTGACAGATAACCCTTCTCGCCTTGAGATATGATGTAAATTTGATGTGC
CTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAAATAACCCTTCTCGCCTTAAGAT
ATGCTGA
Found at i:99160 original size:95 final size:95
Alignment explanation
Indices: 98949--99209 Score: 371
Period size: 95 Copynumber: 2.7 Consensus size: 95
98939 GGCTAGCTAG
* * * *
98949 ATCCATAAAGCCGAGGCGTTTAACCAATTTCTCTAGAGGGATAGCTCAATATCATTGTATAG-AT
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGATAACTC-A-AGC-TT-TATTGTAT
*
99013 ATTATAATCACCTTTATCAGGCTAGCTGAATATT
62 ATTATAATCACCTTTATCAGACTAGCTGAATATT
*
99047 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
* *
99112 TAATCACCTTTATCAGACTAGTTGAATCTT
66 TAATCACCTTTATCAGACTAGCTGAATATT
* * *
99142 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGTTTTATTGTATATAT
1 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATAT-T
99207 ATA
65 ATA
99210 TAATATTATA
Statistics
Matches: 149, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
94 4 0.03
95 94 0.63
96 6 0.04
97 1 0.01
98 44 0.30
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (95 bp):
ATCCATAAAGCCGAGGCGTTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
TAATCACCTTTATCAGACTAGCTGAATATT
Found at i:103264 original size:23 final size:23
Alignment explanation
Indices: 103234--103293 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
103224 CATTTTATAT
103234 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
* * *
103257 GGCACTTCGGTGCAATTTTATGT
1 GGCACTTCGGTGCAATTCTACGC
103280 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
103294 TTTATACGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.30
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:106862 original size:21 final size:21
Alignment explanation
Indices: 106836--106876 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
106826 TCTGGGCAAA
106836 GTGTATCGATGCACATTCAAT
1 GTGTATCGATGCACATTCAAT
*
106857 GTGTATCGATGCACTTTCAA
1 GTGTATCGATGCACATTCAA
106877 ATAAATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (21 bp):
GTGTATCGATGCACATTCAAT
Found at i:111266 original size:12 final size:12
Alignment explanation
Indices: 111245--111283 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
111235 GTTAGATCGC
*
111245 AAATATAAAAAT
1 AAATAAAAAAAT
111257 AAATAAAAAAAT
1 AAATAAAAAAAT
*
111269 ATA-AAAAAAAT
1 AAATAAAAAAAT
111280 AAAT
1 AAAT
111284 TAAATATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:111270 original size:20 final size:20
Alignment explanation
Indices: 111245--111294 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
111235 GTTAGATCGC
111245 AAATATAAAAATAAATAAA-A
1 AAATATAAAAA-AAATAAATA
*
111265 AAATATAAAAAAAATAAATT
1 AAATATAAAAAAAATAAATA
111285 AAATATAAAA
1 AAATATAAAA
111295 TCAAGTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 7 0.25
20 21 0.75
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATATAAAAAAAATAAATA
Found at i:111295 original size:12 final size:10
Alignment explanation
Indices: 111245--111294 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
111235 GTTAGATCGC
111245 AAATATAAAA
1 AAATATAAAA
111255 ATAA-ATAAAA
1 A-AATATAAAA
111265 AAATATAAAA
1 AAATATAAAA
*
111275 AAA-ATAAATT
1 AAATATAAA-A
111285 AAATATAAAA
1 AAATATAAAA
111295 TCAAGTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 7 0.21
10 20 0.59
11 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAATATAAAA
Found at i:111506 original size:26 final size:26
Alignment explanation
Indices: 111477--111539 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
111467 AAAAGTAAAT
* *
111477 AGTTGAAAAAAGGAAAAGGTTGAAAA
1 AGTTGAAAAAAGGAAAAAGTGGAAAA
111503 AGTTGAAAAAAGGAAAAAGTGGAAAA
1 AGTTGAAAAAAGGAAAAAGTGGAAAA
111529 AGTTGAAAAAA
1 AGTTGAAAAAA
111540 AACGTTTAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.25, T:0.14
Consensus pattern (26 bp):
AGTTGAAAAAAGGAAAAAGTGGAAAA
Found at i:111507 original size:9 final size:9
Alignment explanation
Indices: 111477--111538 Score: 60
Period size: 9 Copynumber: 7.1 Consensus size: 9
111467 AAAAGTAAAT
111477 AGTTGAAAAA
1 AGTTG-AAAA
111487 AG--GAAAA
1 AGTTGAAAA
*
111494 GGTTGAAAA
1 AGTTGAAAA
111503 AGTTGAAAAA
1 AGTTG-AAAA
111513 AG--GAAAA
1 AGTTGAAAA
*
111520 AGTGGAAAA
1 AGTTGAAAA
111529 AGTTGAAAA
1 AGTTGAAAA
111538 A
1 A
111539 AAACGTTTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
7 11 0.25
8 2 0.05
9 23 0.52
10 8 0.18
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.15
Consensus pattern (9 bp):
AGTTGAAAA
Found at i:111519 original size:16 final size:18
Alignment explanation
Indices: 111467--111503 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
111457 CAAAAAGGTT
*
111467 AAAAGTAAATA-GTTGAA
1 AAAAGGAAATAGGTTGAA
111484 AAAAGGAAA-AGGTTGAA
1 AAAAGGAAATAGGTTGAA
111501 AAA
1 AAA
111504 GTTGAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 1 0.06
17 17 0.94
ACGTcount: A:0.62, C:0.00, G:0.22, T:0.16
Consensus pattern (18 bp):
AAAAGGAAATAGGTTGAA
Found at i:111537 original size:17 final size:18
Alignment explanation
Indices: 111477--111538 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 18
111467 AAAAGTAAAT
*
111477 AGTTGAAAAA-AGGAAAA
1 AGTTGAAAAAGTGGAAAA
* *
111494 GGTTGAAAAAGTTGAAAAA
1 AGTTGAAAAAG-TGGAAAA
111513 AG--GAAAAAGTGGAAAA
1 AGTTGAAAAAGTGGAAAA
111529 AGTTGAAAAA
1 AGTTGAAAAA
111539 AAACGTTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
16 8 0.22
17 16 0.44
18 6 0.17
19 6 0.17
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.15
Consensus pattern (18 bp):
AGTTGAAAAAGTGGAAAA
Found at i:111648 original size:2 final size:2
Alignment explanation
Indices: 111643--111719 Score: 154
Period size: 2 Copynumber: 38.5 Consensus size: 2
111633 AAATAAGATA
111643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
111685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
111720 AATGATGTAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 75 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:113019 original size:2 final size:2
Alignment explanation
Indices: 113014--113067 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
113004 TGTGTAAATA
113014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
113056 AT AC AT -T AT AT A
1 AT AT AT AT AT AT A
113068 CTCGTATAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:114202 original size:15 final size:15
Alignment explanation
Indices: 114184--114216 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
114174 GGGACCCCTT
114184 TAATGGCGTAAATGA
1 TAATGGCGTAAATGA
114199 TAATGGCGTAAATGA
1 TAATGGCGTAAATGA
114214 TAA
1 TAA
114217 ATGGTAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (15 bp):
TAATGGCGTAAATGA
Found at i:114334 original size:6 final size:6
Alignment explanation
Indices: 114323--114348 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
114313 CTAGGAGGCC
114323 TTGGTG TTGGTG TTGGTG TTGGTG TT
1 TTGGTG TTGGTG TTGGTG TTGGTG TT
114349 TTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54
Consensus pattern (6 bp):
TTGGTG
Found at i:115211 original size:22 final size:21
Alignment explanation
Indices: 115161--115211 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
115151 CGTTTATTTT
115161 TTTAATTTTTAATAATAAAAA
1 TTTAATTTTTAATAATAAAAA
115182 TATT-ATTTTTAATTAA-AAAAA
1 T-TTAATTTTTAA-TAATAAAAA
115203 GTTTAATTT
1 -TTTAATTT
115212 ATTTATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTAATTTTTAATAATAAAAA
Found at i:119894 original size:31 final size:31
Alignment explanation
Indices: 119824--119901 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
119814 CTTTTAAACA
** * * *
119824 TTGCAATACAGTCCCCTAATATTTAGTCCGT
1 TTGCAATATGGTCCCCCAACATTTAGTACGT
*
119855 TTGCAATATGGTCCCCCAACATTTAGTATGT
1 TTGCAATATGGTCCCCCAACATTTAGTACGT
119886 TTGCAATATGGTCCCC
1 TTGCAATATGGTCCCC
119902 GAAGTATCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (31 bp):
TTGCAATATGGTCCCCCAACATTTAGTACGT
Found at i:122010 original size:2 final size:2
Alignment explanation
Indices: 122003--122039 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
121993 ATACGATTGA
122003 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
122040 ATAGAAAAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:122546 original size:31 final size:31
Alignment explanation
Indices: 122503--122566 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
122493 TTACTTCGGA
**
122503 GACCATAATGCAAGTAGACTAAATGTTGGGG
1 GACCATAATGCAAACAGACTAAATGTTGGGG
*
122534 GACCATATTGCAAACAGACTAAATGTTGGGG
1 GACCATAATGCAAACAGACTAAATGTTGGGG
122565 GA
1 GA
122567 TTGTATTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (31 bp):
GACCATAATGCAAACAGACTAAATGTTGGGG
Found at i:125664 original size:77 final size:78
Alignment explanation
Indices: 125560--125713 Score: 208
Period size: 77 Copynumber: 2.0 Consensus size: 78
125550 TTTGAATTAA
125560 TTAAATCTTATTTAATTAATTCAAATTAAATATCCATT-AAAGACTTATAATTC-AAATTACACT
1 TTAAATCTTATTTAATTAATTCAAATTAAATATCCATTAAAAGACTTATAA-TCAAAATTACACT
125623 C-TTTAATGTTTAT
65 CTTTTAATGTTTAT
* * * * *
125636 TTAAACTCTTATTTAATT-ATTCCGAATTAAATATCCATTAAAAGAGTTGTAATCAAAATTATAT
1 TTAAA-TCTTATTTAATTAATT-CAAATTAAATATCCATTAAAAGACTTATAATCAAAATTACAC
125700 TCTTTTAATGTTTA
64 TCTTTTAATGTTTA
125714 CTTACTATAT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
76 8 0.12
77 30 0.44
78 19 0.28
79 11 0.16
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.45
Consensus pattern (78 bp):
TTAAATCTTATTTAATTAATTCAAATTAAATATCCATTAAAAGACTTATAATCAAAATTACACTC
TTTTAATGTTTAT
Found at i:125800 original size:2 final size:2
Alignment explanation
Indices: 125753--125784 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
125743 ATGTATATCA
125753 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125785 TAAATCTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:133179 original size:16 final size:16
Alignment explanation
Indices: 133160--133193 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
133150 GTTATTATTT
133160 CTAGATATTATTGTTA
1 CTAGATATTATTGTTA
133176 CTAGATATTATTGTTA
1 CTAGATATTATTGTTA
133192 CT
1 CT
133194 CCTCCTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (16 bp):
CTAGATATTATTGTTA
Found at i:134852 original size:16 final size:17
Alignment explanation
Indices: 134831--134868 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
134821 CATCCCCTTA
134831 AAAAAGG-TTGCAACAT
1 AAAAAGGATTGCAACAT
*
134847 AAAAAGGATTTGCAACCT
1 AAAAAGGA-TTGCAACAT
134865 AAAA
1 AAAA
134869 TGTGGTGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
18 12 0.63
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.18
Consensus pattern (17 bp):
AAAAAGGATTGCAACAT
Found at i:134916 original size:35 final size:36
Alignment explanation
Indices: 134877--134961 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 36
134867 AATGTGGTGC
* *
134877 AAATGTGGTGCAATTTG-GAAAAGTGGTGTAACCTA
1 AAATGTGGTGCAACTTGAAAAAAGTGGTGTAACCTA
*
134912 AAATGTGGAGCAACTTGAAAAAAGTGGTGTAACCTA
1 AAATGTGGTGCAACTTGAAAAAAGTGGTGTAACCTA
* *
134948 ATATGTTGTGCAAC
1 AAATGTGGTGCAAC
134962 CATAAAATAG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 15 0.35
36 28 0.65
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (36 bp):
AAATGTGGTGCAACTTGAAAAAAGTGGTGTAACCTA
Found at i:134979 original size:18 final size:18
Alignment explanation
Indices: 134956--135010 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
134946 TAATATGTTG
134956 TGCAACCATAAAATAGGT
1 TGCAACCATAAAATAGGT
* *
134974 TGCAA-CTTAAAAT--GA
1 TGCAACCATAAAATAGGT
134989 T--AACCATAAAATAGGT
1 TGCAACCATAAAATAGGT
135005 TGCAAC
1 TGCAAC
135011 TTAAAATGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 2 0.07
14 7 0.25
15 2 0.07
16 2 0.07
17 7 0.25
18 8 0.29
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (18 bp):
TGCAACCATAAAATAGGT
Found at i:134986 original size:17 final size:17
Alignment explanation
Indices: 134964--135017 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
134954 TGTGCAACCA
134964 TAAAATAGGTTGCAACT
1 TAAAATAGGTTGCAACT
* *
134981 TAAAAT--GAT--AACCA
1 TAAAATAGGTTGCAA-CT
134995 TAAAATAGGTTGCAACT
1 TAAAATAGGTTGCAACT
135012 TAAAAT
1 TAAAAT
135018 GATAACCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 2 0.07
14 7 0.25
15 2 0.07
16 2 0.07
17 13 0.46
18 2 0.07
ACGTcount: A:0.48, C:0.11, G:0.13, T:0.28
Consensus pattern (17 bp):
TAAAATAGGTTGCAACT
Found at i:134997 original size:31 final size:31
Alignment explanation
Indices: 134959--135038 Score: 151
Period size: 31 Copynumber: 2.6 Consensus size: 31
134949 TATGTTGTGC
134959 AACCATAAAATAGGTTGCAACTTAAAATGAT
1 AACCATAAAATAGGTTGCAACTTAAAATGAT
134990 AACCATAAAATAGGTTGCAACTTAAAATGAT
1 AACCATAAAATAGGTTGCAACTTAAAATGAT
*
135021 AACCATAAAATATGTTGC
1 AACCATAAAATAGGTTGC
135039 TTGATTGTTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.26
Consensus pattern (31 bp):
AACCATAAAATAGGTTGCAACTTAAAATGAT
Found at i:137101 original size:21 final size:21
Alignment explanation
Indices: 137077--137116 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
137067 TTTTGTTATT
137077 ATTATTACTT-TTTATTACTTA
1 ATTATT-CTTATTTATTACTTA
*
137098 ATTATTTTTATTTATTACT
1 ATTATTCTTATTTATTACT
137117 ATTATGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTATTCTTATTTATTACTTA
Found at i:137280 original size:26 final size:26
Alignment explanation
Indices: 137250--137299 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
137240 AATATAAATG
*
137250 TATTATTTTTTATT-TACTACGTTTTT
1 TATTATATTTTATTCTA-TACGTTTTT
*
137276 TATTATATTTTGTTCTATACGTTT
1 TATTATATTTTATTCTATACGTTT
137300 ATATTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.20, C:0.08, G:0.06, T:0.66
Consensus pattern (26 bp):
TATTATATTTTATTCTATACGTTTTT
Found at i:137329 original size:18 final size:19
Alignment explanation
Indices: 137303--137338 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
137293 TACGTTTATA
*
137303 TTTTTTACT-TTATTTTAG
1 TTTTCTACTATTATTTTAG
137321 TTTTCTACTATTATTTTA
1 TTTTCTACTATTATTTTA
137339 ATAATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTCTACTATTATTTTAG
Found at i:148780 original size:106 final size:106
Alignment explanation
Indices: 148658--148889 Score: 294
Period size: 106 Copynumber: 2.2 Consensus size: 106
148648 ATATCGTGCC
* * *
148658 ACTCGAGACAACACAAG-TTCAACTTCACAACGAATGGATGGCTGGTTGTCAACAAACAATTTCC
1 ACTCGAGACAACACAAGCTT-AACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCC
* *
148722 CAGTT-TCAGAGTC-AATTTTAACTTCACATCGAAGGATATTAG
65 CAGTTCT-AGAG-CAAATTTCAACTTCACAGCGAAGGATATTAG
* * *
148764 ACTCGAGACAGCACAAGCTTAACTTCACAGCGAAGGGGCGGCTGGCTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGCTTAACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCCC
* *
148829 AGTTCTAGAGCAAATTTCAACTTCACGGCGTAGGATATTAG
66 AGTTCTAGAGCAAATTTCAACTTCACAGCGAAGGATATTAG
*
148870 ACTC-AGAACAATACAA-CTTA
1 ACTCGAG-ACAACACAAGCTTA
148890 CTTGGATTTC
Statistics
Matches: 110, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
105 7 0.06
106 100 0.91
107 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (106 bp):
ACTCGAGACAACACAAGCTTAACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCCC
AGTTCTAGAGCAAATTTCAACTTCACAGCGAAGGATATTAG
Done.