genome.fa.s1438.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001438.1 Hibiscus syriacus cultivar Beakdansim tig00002787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163513

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5629--5654	9	2.9	9	100	0	52	23	0	0	76	0.78
5889--5932	18	2.4	18	82	17	56	56	0	6	36	1.26
5946--5977	17	1.9	17	93	6	57	34	0	0	65	0.93
16353--16379	14	1.9	14	100	0	54	66	14	7	11	1.43
18551--18593	15	2.9	15	96	0	77	11	67	9	11	1.42
18538--18593	19	3.2	18	78	19	64	10	67	10	10	1.42
20333--20368	10	3.6	10	88	0	54	13	19	16	50	1.79
20406--20444	20	2.0	20	84	0	51	61	15	10	12	1.56
20597--20633	14	2.6	14	91	0	56	59	5	13	21	1.54
20608--20658	24	2.1	24	85	0	66	58	15	9	15	1.62
20601--20657	14	4.4	14	70	17	50	59	12	10	17	1.60
28926--28967	18	2.3	19	95	4	77	71	9	4	14	1.28
28925--28968	19	2.3	20	88	11	74	72	9	4	13	1.24
29626--29800	43	4.1	43	90	0	260	26	21	23	29	1.99
30004--30053	21	2.4	21	86	0	64	58	18	4	20	1.55
30914--31002	36	2.5	36	92	1	144	38	16	15	29	1.90
35365--35413	22	2.2	22	82	7	64	32	32	28	6	1.82
36129--36222	30	3.1	30	89	3	136	20	21	25	32	1.97
37422--37456	4	8.8	4	93	0	61	20	51	2	25	1.61
37852--38212	41	8.9	41	90	2	541	33	20	20	25	1.97
37852--38212	125	3.0	121	89	4	521	33	20	20	25	1.97
37850--38174	166	2.0	162	93	2	560	34	20	20	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39233--39267	2	17.5	2	100	0	70	51	0	0	48	1.00
39309--39421	2	59.5	2	68	22	57	41	1	4	52	1.32
39370--39415	18	2.6	18	89	3	67	39	0	6	54	1.26
39314--39420	39	2.8	38	76	17	105	42	1	4	51	1.33
40525--40625	25	4.0	25	77	15	91	38	0	4	55	1.28
40525--40626	29	3.7	28	78	16	99	38	0	4	55	1.28
40538--40642	47	2.3	45	80	11	117	37	2	4	55	1.36
40525--40622	2	52.0	2	69	22	61	38	1	5	55	1.29
41821--41872	17	2.9	17	72	16	52	23	15	1	59	1.46
42605--42630	5	5.2	5	100	0	52	57	0	0	42	0.98
42989--43055	20	3.3	20	70	12	55	22	19	19	38	1.93
42978--43062	41	2.1	41	84	0	107	24	21	17	36	1.94
43068--43108	19	2.0	20	86	9	57	24	21	21	31	1.98
43168--43194	6	4.5	6	100	0	54	33	51	14	0	1.43
43490--43580	19	4.4	20	76	17	105	30	28	5	35	1.80
43501--43582	44	1.9	41	87	7	119	32	29	6	31	1.82
45360--45438	8	9.9	8	72	16	58	32	5	2	59	1.33
45605--45715	51	2.2	51	82	6	127	17	28	35	18	1.94
49754--49806	13	4.5	12	75	20	58	67	9	0	22	1.19
52032--52105	29	2.5	31	79	10	86	63	4	1	31	1.21
52072--52105	17	1.9	18	88	5	52	64	5	0	29	1.17
56194--56258	24	2.7	24	81	13	71	47	3	0	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56250--56288	14	2.7	15	96	4	71	38	0	0	61	0.96
56281--56331	23	2.2	23	86	6	68	47	1	3	47	1.32
56396--56499	24	4.1	24	67	21	61	52	0	0	46	1.07
56466--56512	24	2.0	24	87	4	69	53	0	0	46	1.00
57475--57520	18	2.6	18	82	0	56	39	6	2	52	1.40
57514--57564	26	1.9	27	84	11	70	33	7	0	58	1.27
66277--66316	18	2.2	18	86	0	53	22	45	17	15	1.85
68709--68815	24	4.5	23	77	9	90	21	11	14	52	1.73
68707--68815	48	2.3	48	82	6	123	21	11	14	52	1.73
70957--70995	17	2.3	17	90	0	60	51	5	12	30	1.62
73211--73289	24	3.3	24	82	8	99	17	11	16	54	1.71
77379--77680	149	2.0	148	91	0	487	26	15	21	36	1.93
82151--82464	149	2.1	148	91	1	495	25	16	22	35	1.95
82432--82476	23	2.0	23	90	0	72	22	26	26	24	2.00
82666--82726	21	2.9	21	80	4	61	49	1	18	31	1.57
82668--82733	33	2.0	33	82	5	80	50	1	16	31	1.55
84352--84383	16	1.9	17	93	6	57	37	3	21	37	1.70
89602--89637	18	2.0	18	100	0	72	55	11	0	33	1.35
91674--91715	6	7.0	6	81	7	50	14	16	28	40	1.88
91674--91716	19	2.4	18	80	7	52	13	16	27	41	1.86
92335--92365	11	2.8	11	90	0	53	32	0	35	32	1.58
92968--93177	6	33.7	6	85	7	240	38	32	11	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93956--93996	18	2.3	18	95	0	73	43	9	12	34	1.75
94808--94903	31	3.1	31	78	0	102	36	22	15	25	1.94
95793--95851	20	3.0	20	94	0	109	22	18	30	28	1.97
97012--97042	12	2.6	12	94	0	53	45	19	19	16	1.86
97152--97185	18	1.9	18	88	5	52	41	11	8	38	1.73
97369--97422	27	2.0	27	92	0	90	44	20	5	29	1.74
97887--97917	2	15.5	2	100	0	62	48	0	0	51	1.00
111712--111856	64	2.3	63	83	9	177	29	15	26	28	1.96
119098--119167	2	35.0	2	100	0	140	50	0	0	50	1.00
120159--120193	15	2.3	15	100	0	70	14	22	34	28	1.93
120797--120833	2	18.5	2	100	0	74	48	0	0	51	1.00
124892--124976	21	4.0	21	90	0	125	34	8	23	34	1.85
126580--126678	30	3.2	30	69	23	87	59	2	6	32	1.33
126791--126990	102	2.0	103	91	4	325	48	12	10	29	1.73
128182--128224	2	21.5	2	100	0	86	48	0	0	51	1.00
129014--129040	3	9.0	3	100	0	54	33	0	0	66	0.92
129622--129661	3	13.3	3	100	0	80	32	0	0	67	0.91
132181--132232	4	12.8	4	79	18	54	21	0	0	78	0.74
132182--132228	17	2.9	16	87	12	69	21	0	0	78	0.75
132181--132233	20	2.5	22	91	8	85	20	0	0	79	0.74
132724--133086	184	2.0	183	96	3	676	35	20	12	30	1.90
145187--145225	20	2.0	20	94	0	69	28	10	25	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150708--150775	34	2.0	34	100	0	136	20	14	26	38	1.91

Tables:   1

The End!