genome.fa.s1439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001439.1 Hibiscus syriacus cultivar Beakdansim tig00002788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69619

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12173--12251	36	2.2	36	88	4	115	37	17	17	26	1.92
12493--12517	3	8.3	3	100	0	50	68	0	32	0	0.90
15130--15280	74	2.0	75	89	7	236	23	20	17	38	1.93
15289--15385	48	2.0	48	89	0	149	29	19	13	37	1.90
21293--21351	28	2.1	29	84	9	77	45	15	16	22	1.84
21422--21490	12	5.2	12	76	19	66	47	17	18	15	1.82
21422--21490	27	2.6	27	97	0	129	47	17	18	15	1.82
21427--21481	15	3.9	15	86	13	89	49	14	18	18	1.80
21923--21962	21	1.9	21	94	0	71	30	15	7	47	1.72
21957--22055	33	3.0	33	94	1	164	32	7	15	45	1.73
22041--22095	13	4.2	13	75	13	58	34	3	12	49	1.59
22500--22546	15	3.0	15	79	11	58	29	12	12	44	1.80
22510--22543	18	1.9	18	94	5	61	38	11	11	38	1.79
23336--23395	27	2.1	30	79	14	74	45	0	8	46	1.33
28781--28896	54	2.1	55	90	4	182	23	12	16	47	1.81
35591--35694	53	1.9	54	92	1	174	30	19	20	29	1.97
38388--38429	20	2.1	20	86	0	57	40	4	19	35	1.72
46012--46095	30	2.8	30	80	5	80	34	29	17	17	1.94
46070--46164	31	3.1	31	76	3	102	34	20	17	27	1.95
46298--46333	17	2.0	19	89	10	58	38	11	5	44	1.63
46814--46961	63	2.3	65	83	8	187	28	17	20	33	1.96
50253--50347	31	3.1	31	78	3	93	35	21	16	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021--51142	64	1.9	65	87	1	183	29	16	20	33	1.94
58987--59011	12	2.1	12	100	0	50	52	0	8	40	1.31
60394--60420	13	2.1	13	100	0	54	44	0	0	55	0.99
60574--60653	32	2.7	28	78	17	90	45	2	8	43	1.48
60818--60886	30	2.2	30	80	15	77	36	5	17	40	1.74
60827--60886	30	2.0	30	87	6	86	35	6	16	41	1.75
60966--61043	21	3.7	23	79	14	71	23	33	20	23	1.97
63675--63733	30	2.0	30	93	3	102	33	6	16	42	1.75
63813--63870	21	2.8	21	89	0	89	24	36	17	22	1.95
63844--63868	13	1.9	13	100	0	50	24	32	20	24	1.98
63813--63894	21	3.9	20	84	9	85	24	34	18	23	1.96
64060--64120	20	2.9	20	90	7	77	37	34	9	18	1.83
64074--64120	20	2.3	20	100	0	94	34	34	12	19	1.89

Tables:   1

The End!