genome.fa.s1440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001440.1 Hibiscus syriacus cultivar Beakdansim tig00002789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78581

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5712--5818	55	1.9	56	92	1	180	47	15	11	25	1.79
11174--11230	29	2.1	29	83	9	75	45	8	0	45	1.34
12022--12068	17	3.0	15	79	11	58	44	12	12	29	1.80
12025--12058	17	2.0	17	94	0	59	38	11	11	38	1.79
12472--12526	13	4.2	13	75	13	58	49	12	3	34	1.59
12512--12610	33	3.0	33	94	1	164	45	15	7	32	1.73
12605--12644	21	1.9	21	94	0	71	47	7	15	30	1.72
13078--13144	15	4.9	13	84	15	91	16	17	14	50	1.78
13084--13139	15	3.9	15	90	9	98	17	17	14	50	1.79
13078--13144	28	2.4	28	97	2	127	16	17	14	50	1.78
13214--13271	27	2.1	28	84	9	75	22	17	15	44	1.86
19184--19280	48	2.0	48	89	0	149	37	13	19	29	1.90
22307--22385	36	2.2	36	88	4	115	26	17	17	37	1.92
37019--37190	41	4.2	41	83	0	200	26	15	23	34	1.94
36997--37173	82	2.2	82	86	0	246	25	13	24	36	1.92
39236--39298	29	2.2	29	91	0	99	31	28	6	33	1.82
45606--45679	37	2.0	36	84	7	96	47	4	2	45	1.35
46224--46248	12	2.1	12	100	0	50	52	8	24	16	1.70
47094--47130	2	18.5	2	100	0	74	51	0	0	48	1.00
47512--47554	17	2.3	18	80	19	52	51	0	0	48	1.00
53902--53999	31	3.2	30	69	11	83	37	10	5	46	1.60
53900--54030	60	2.2	60	90	2	201	39	11	6	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56443--56474	3	10.7	3	100	0	64	68	0	0	31	0.90
57137--57269	69	1.9	69	93	3	232	30	24	13	31	1.94
58528--58850	167	1.9	166	86	3	461	38	16	14	30	1.89
63943--64001	21	2.8	21	92	0	100	18	38	32	10	1.84
69047--69074	6	4.7	6	100	0	56	35	32	14	17	1.90
78014--78047	13	2.6	13	95	0	59	50	0	0	50	1.00

Tables:   1

The End!