genome.fa.s1441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001441.1 Hibiscus syriacus cultivar Beakdansim tig00002790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53659

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4450--4482	15	2.1	16	88	5	50	39	3	6	51	1.42
5337--5395	25	2.4	25	86	11	77	32	5	5	57	1.42
7842--7935	41	2.3	42	83	3	118	24	11	17	46	1.81
25232--25266	13	2.6	13	90	4	52	51	0	0	48	1.00
25231--25263	12	2.6	13	85	4	50	51	0	0	48	1.00
26665--26697	16	2.1	16	88	5	50	39	0	0	60	0.97
34884--34927	19	2.4	19	81	14	56	50	0	2	47	1.13
35280--35351	14	4.7	15	76	15	58	50	2	1	45	1.25
39202--39287	42	2.1	39	83	10	102	40	19	20	18	1.91
43142--43170	8	3.6	8	100	0	58	27	34	0	37	1.57
43138--43178	16	2.6	16	77	14	57	26	31	0	41	1.56
45560--45606	21	2.2	22	85	7	71	21	25	17	36	1.94
46234--46301	20	3.4	20	85	4	75	17	14	23	44	1.86
46268--46312	20	2.2	20	88	0	63	15	15	17	51	1.77
47766--47801	6	6.0	6	100	0	72	16	66	0	16	1.25
48175--48277	20	5.5	20	78	13	112	38	22	19	19	1.93
48182--48314	53	2.5	52	88	2	185	39	21	21	18	1.92
48323--48381	20	3.0	20	94	0	100	22	20	20	37	1.95
50310--50344	13	2.6	14	90	4	54	28	0	22	48	1.51
50456--50539	33	2.5	33	88	3	116	44	17	22	15	1.87
50338--50803	233	2.0	235	92	3	789	34	13	18	32	1.91
50678--50773	33	2.9	34	79	3	113	42	19	20	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50782--50848	18	3.9	18	72	18	61	16	20	17	44	1.86
50788--50870	33	2.5	33	88	1	114	15	22	18	43	1.87
50853--50964	20	5.7	20	81	6	122	21	22	23	33	1.98
50855--50966	39	2.8	40	80	6	122	22	21	22	33	1.97
53324--53375	24	2.2	24	82	0	59	36	21	19	23	1.95

Tables:   1

The End!