genome.fa.s1442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001442.1 Hibiscus syriacus cultivar Beakdansim tig00002791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60991

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4118--4171	11	4.4	13	77	15	53	72	0	1	25	0.95
4137--4174	15	2.3	16	86	13	51	76	0	0	23	0.79
4562--5115	283	2.0	278	95	2	1002	33	20	16	29	1.95
9033--9063	4	7.8	4	92	0	53	29	0	0	70	0.87
16121--16570	182	2.5	182	92	0	720	27	16	13	42	1.85
16483--16536	20	2.7	20	73	0	63	16	14	11	57	1.65
19393--20425	199	5.2	199	90	3	1542	27	15	15	42	1.86
20348--20955	300	2.0	300	94	0	1092	29	13	16	40	1.87
23313--23354	15	2.9	14	82	10	57	28	2	50	19	1.60
23699--23731	14	2.3	15	89	5	50	30	12	15	42	1.83
23703--25000	199	6.5	199	94	0	2159	27	15	15	40	1.88
25346--25394	19	2.6	19	90	3	73	57	10	2	30	1.43
26856--26894	18	2.2	18	95	0	69	5	41	0	53	1.23
27303--27350	9	5.3	9	84	0	60	8	54	6	31	1.55
27311--27350	18	2.2	18	95	0	71	7	55	5	32	1.50
27583--27639	24	2.5	21	76	17	60	49	7	1	42	1.40
28144--28186	21	2.1	20	91	4	68	32	37	4	25	1.77
28604--28642	18	2.2	18	86	9	53	41	7	5	46	1.55
28893--28941	19	2.6	20	87	12	77	38	18	0	42	1.50
29325--30527	182	6.6	181	88	2	1612	27	14	13	44	1.83
29325--30520	365	3.3	362	87	2	1659	27	14	13	44	1.83
30456--30494	20	1.9	21	89	5	62	15	15	23	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34192--34232	20	2.0	20	90	9	66	31	14	19	34	1.92
34274--34330	20	2.8	20	83	0	60	28	15	15	40	1.88
45665--45694	16	1.9	15	93	6	51	80	0	20	0	0.72
46723--46840	51	2.3	51	88	0	164	32	25	9	33	1.88
46612--46899	139	2.1	137	86	2	389	32	23	9	35	1.86
50851--50972	62	2.0	63	90	1	192	36	18	20	24	1.95
58025--58188	81	2.0	84	85	5	228	31	17	15	35	1.92
58094--58479	123	3.2	123	84	3	514	27	18	14	39	1.89

Tables:   1

The End!