Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001443.1 Hibiscus syriacus cultivar Beakdansim tig00002792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68414

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18917--18999
42
2.0
42
95
0
148
32
28
14
24
1.94
20371--20445
36
2.1
36
89
0
114
10
48
0
41
1.38
20357--20451
42
2.3
42
82
10
106
9
44
1
45
1.43
22573--22648
30
2.5
30
82
8
82
44
10
15
28
1.80
27544--27761
103
2.1
103
93
0
373
27
12
22
37
1.91
29237--29316
36
2.2
36
81
0
97
32
22
26
18
1.97
29841--29946
55
1.9
55
83
7
135
57
5
6
30
1.47
32506--32612
53
2.0
53
98
0
205
32
14
15
36
1.89
35583--35742
69
2.3
71
81
5
173
24
38
13
23
1.91
35583--35789
24
8.8
24
78
7
145
25
36
14
23
1.93
35583--35766
93
2.0
93
81
4
219
25
37
14
22
1.92
39272--39351
24
3.3
24
96
0
142
25
27
20
27
1.99
39796--39844
20
2.4
21
86
3
73
61
0
4
34
1.15
41280--41310
16
1.9
16
93
0
53
29
12
16
41
1.85
44836--44869
14
2.2
16
90
10
54
70
0
5
23
1.09
48745--48846
27
3.8
26
70
17
66
48
0
2
49
1.16
48831--48909
11
7.2
11
73
13
56
55
1
0
43
1.07
48854--48896
15
3.3
13
79
20
54
53
2
0
44
1.13
48882--48986
22
4.7
22
77
12
99
53
0
0
45
1.06
48877--48945
11
6.1
11
77
12
77
53
1
0
44
1.09
48838--48945
57
1.9
55
88
7
164
54
1
0
43
1.11
48882--48959
24
3.3
23
80
16
72
51
1
0
47
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50899--50935
19
1.9
19
94
0
65
18
35
10
35
1.86
54102--54131
11
2.8
11
95
5
53
6
16
0
76
0.99
54626--54660
17
2.1
17
94
0
61
28
28
22
20
1.98
58686--58737
14
3.2
18
64
25
51
23
11
17
48
1.79
58845--58893
16
2.9
18
76
14
59
55
0
0
44
0.99
58845--58893
17
2.9
17
79
11
57
55
0
0
44
0.99
58852--58951
53
1.9
53
82
11
127
54
0
4
42
1.19
59596--59637
12
3.5
12
75
12
50
40
7
4
47
1.52
59586--59640
24
2.3
24
100
0
110
38
14
3
43
1.63
59739--59776
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!