Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001445.1 Hibiscus syriacus cultivar Beakdansim tig00002794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73735

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7668--7720
20
2.6
20
87
3
70
28
18
20
32
1.97
11365--11403
19
2.1
19
95
0
69
41
10
23
25
1.86
13341--13424
37
2.3
36
87
6
116
33
4
17
44
1.70
17891--18008
35
3.3
36
86
4
168
32
5
18
43
1.74
19678--19770
27
3.3
27
77
6
87
60
0
2
37
1.09
24220--24250
13
2.4
13
100
0
62
12
16
48
22
1.80
24510--24586
13
6.3
11
74
15
55
77
5
2
14
1.04
24535--24578
5
8.6
5
80
14
54
77
2
2
18
0.98
24502--24578
21
3.7
20
75
13
66
77
3
3
14
1.05
24520--24591
26
2.9
26
82
13
89
75
6
1
16
1.10
24498--24586
18
5.2
18
68
21
66
77
4
3
14
1.06
25058--25104
24
2.1
21
84
11
58
63
0
12
23
1.28
25076--25116
21
2.0
21
85
9
57
70
0
4
24
1.06
25129--25185
30
1.9
29
86
10
80
59
1
3
35
1.25
26561--27643
105
10.3
105
95
0
1743
23
18
25
33
1.97
37893--37926
10
3.4
10
87
0
50
73
0
5
20
1.04
38924--39000
13
6.3
11
74
15
55
77
5
2
14
1.04
38949--38992
5
8.6
5
80
14
54
77
2
2
18
0.98
38925--38992
21
3.2
20
78
14
64
77
4
2
14
1.04
38921--39005
26
3.4
26
81
14
90
76
5
2
15
1.08
38921--39000
18
4.7
18
70
22
66
77
5
2
15
1.04
39296--39333
2
19.0
2
100
0
76
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39478--39524
24
2.1
21
84
11
58
63
0
12
23
1.28
39489--39536
9
5.3
9
76
0
51
68
0
6
25
1.12
39562--39615
9
5.1
11
80
15
53
57
1
1
38
1.20
39586--39619
3
11.3
3
87
12
52
64
0
0
35
0.94
39570--39619
12
4.1
12
80
19
59
60
2
0
38
1.09
53836--54225
195
2.0
193
98
1
762
36
14
11
36
1.83
56990--57042
22
2.4
23
84
12
60
67
1
5
24
1.22
57008--57048
4
9.8
4
84
10
55
73
0
2
24
0.96
57008--57048
13
3.2
12
80
12
55
73
0
2
24
0.96
57008--57110
30
3.4
30
70
15
88
66
1
4
27
1.23
57008--57049
17
2.4
18
88
7
61
73
0
2
23
0.94
57174--57204
2
15.5
2
100
0
62
51
0
0
48
1.00
57787--57874
37
2.4
36
82
3
95
31
11
14
42
1.82
58621--59987
106
13.0
106
89
3
1987
22
18
24
34
1.96
58621--59987
416
3.3
417
89
3
1962
22
18
24
34
1.96
61465--61529
13
5.4
11
75
20
58
0
12
4
83
0.80
61452--61520
30
2.4
29
79
13
79
1
11
5
81
0.93
61454--61522
21
3.4
21
82
9
81
1
11
5
81
0.93
61487--61542
16
3.4
16
87
5
76
0
16
3
80
0.85
61452--61529
8
9.5
8
77
13
70
1
11
5
82
0.89
67347--67389
20
2.2
20
86
0
59
37
18
13
30
1.90

Tables:   1

The End!