Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001446.1 Hibiscus syriacus cultivar Beakdansim tig00002796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69252

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3494--3525
14
2.3
14
94
0
55
50
15
28
6
1.68
6516--6733
31
7.0
31
74
7
174
29
19
18
31
1.96
6511--6722
63
3.4
62
90
3
302
30
19
18
31
1.96
6990--7054
30
2.1
32
82
5
80
32
3
16
47
1.62
7451--7509
21
2.8
21
92
0
100
30
20
20
28
1.97
11706--11818
60
1.9
60
90
7
185
34
16
14
34
1.89
11953--12008
28
2.0
28
82
0
67
35
14
14
35
1.86
12149--12264
60
1.9
59
84
8
155
34
17
15
32
1.91
15584--15645
32
1.9
33
86
3
90
50
11
17
20
1.77
17411--17461
2
26.0
2
84
4
68
47
0
5
47
1.26
17730--17831
4
26.0
4
68
14
52
20
8
2
67
1.31
17758--17782
10
2.5
10
100
0
50
12
8
0
80
0.92
28338--28377
21
2.0
21
85
9
57
72
0
25
2
0.97
29130--29862
106
6.9
106
96
0
1283
33
25
18
22
1.97
31714--31786
2
37.0
2
88
2
112
47
0
4
47
1.21
32054--32155
4
26.0
4
68
14
52
20
8
2
67
1.31
32082--32106
10
2.5
10
100
0
50
12
8
0
80
0.92
35873--35948
38
2.0
38
97
0
143
38
15
6
39
1.74
39777--39847
30
2.3
31
78
11
83
56
21
1
21
1.50
43113--43566
127
3.6
127
84
3
533
26
17
26
28
1.98
48711--48749
13
3.0
13
96
0
69
25
23
20
30
1.98
48721--48934
85
2.5
85
84
1
277
29
20
17
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57395--57439
20
2.2
21
96
4
83
28
11
0
60
1.31
59671--59735
28
2.3
27
79
10
67
60
6
12
21
1.54
62162--62272
56
2.0
56
98
0
213
59
10
5
24
1.52
62563--62731
2
84.5
2
81
9
193
47
1
1
49
1.22

Tables:   1

The End!