genome.fa.s1447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001447.1 Hibiscus syriacus cultivar Beakdansim tig00002797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104406

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236--1283	19	2.6	19	90	3	71	22	20	22	33	1.97
2041--2151	21	5.4	21	70	14	70	35	23	20	20	1.96
2024--2145	41	3.0	41	82	5	158	36	22	18	22	1.95
12387--12458	25	3.1	25	66	22	66	43	9	19	27	1.82
21164--21194	2	15.5	2	93	0	53	48	3	48	0	1.17
37581--37628	24	2.0	24	100	0	96	29	29	8	33	1.86
37973--38031	29	2.2	26	76	21	68	25	11	8	54	1.65
38016--38122	29	3.0	39	66	25	117	30	7	15	45	1.74
37987--38122	68	2.0	68	100	0	272	29	8	14	47	1.75
38197--38259	23	3.0	20	76	15	72	25	6	15	52	1.66
41009--41054	12	3.6	12	81	16	56	45	17	19	17	1.85
41015--41055	12	3.1	13	80	19	57	46	14	17	21	1.84
43346--43385	21	1.9	21	94	0	71	30	15	7	47	1.72
43380--43478	33	3.0	33	94	1	164	32	7	15	45	1.73
43464--43518	13	4.2	13	75	13	58	34	3	12	49	1.59
43933--43966	18	1.9	18	94	5	61	38	11	11	38	1.79
44060--44091	16	2.0	17	88	11	50	43	21	21	12	1.86
45555--45598	24	1.9	22	86	9	61	52	6	6	34	1.55
49493--49534	21	2.0	21	90	0	66	35	16	26	21	1.94
51181--51336	63	2.4	66	80	8	176	36	19	16	26	1.93
51913--51977	23	2.8	23	72	9	69	26	23	20	30	1.98
58740--58806	23	2.9	23	88	0	89	20	26	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67186--67225	21	1.9	21	85	10	55	35	10	2	52	1.48
70678--70761	24	3.6	24	67	13	68	21	3	5	69	1.26
70592--70752	86	1.8	84	89	9	250	20	4	8	67	1.34
70592--70757	47	3.8	44	88	7	273	20	4	7	67	1.33
70757--70805	13	3.6	13	78	8	53	30	2	10	57	1.43
70789--70852	23	2.8	24	77	13	71	25	0	9	65	1.22
74009--74053	20	2.2	20	96	0	81	35	13	24	26	1.92
74218--74258	22	1.9	21	85	5	55	21	24	21	31	1.98
77315--77358	17	2.4	18	81	14	54	40	2	2	54	1.25
77324--77377	17	3.1	18	78	7	58	48	0	1	50	1.11
77334--77387	17	3.1	17	78	7	54	51	0	0	48	1.00
77409--77447	19	2.1	18	85	4	51	46	2	2	48	1.29
77602--77679	24	3.2	24	76	20	90	53	1	0	44	1.08
77604--77675	11	6.1	11	76	19	58	51	1	0	47	1.09
82433--82826	112	3.5	112	92	0	646	48	13	12	25	1.77
82723--82918	92	2.1	92	94	0	338	48	13	13	24	1.78
82611--83243	204	3.0	204	88	5	845	47	13	14	25	1.80
82815--83313	112	4.5	112	91	2	740	45	13	14	26	1.81
82815--83296	223	2.2	221	89	2	734	46	13	14	25	1.81
82427--83249	427	1.9	427	91	2	1357	47	13	13	25	1.79
83189--83639	182	2.5	182	90	2	696	43	13	14	28	1.83
83582--83612	15	2.1	15	93	0	53	70	9	0	19	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88997--89039	21	2.0	21	86	0	59	30	27	23	18	1.98
95776--95818	21	2.0	21	86	0	59	30	27	23	18	1.98
96467--96534	23	3.0	23	84	0	82	23	27	23	25	2.00
100736--100845	35	3.1	35	65	27	86	29	13	20	36	1.91
101416--101453	3	12.3	3	84	15	51	2	31	0	65	1.06

Tables:   1

The End!