Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001448.1 Hibiscus syriacus cultivar Beakdansim tig00002799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1849635
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 9
Found at i:1265634 original size:40 final size:40
Alignment explanation
Indices: 1265579--1265660 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
1265569 ACTATTTCAC
1265579 TATCGTGAATAGTTCTCTAGAACCTTCAAAGAATGGGTAA
1 TATCGTGAATAGTTCTCTAGAACCTTCAAAGAATGGGTAA
1265619 TATCGTGAATAGTTCTCTAGAACCTTCAAAGAATGGGTAA
1 TATCGTGAATAGTTCTCTAGAACCTTCAAAGAATGGGTAA
1265659 TA
1 TA
1265661 CCTTCTTACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (40 bp):
TATCGTGAATAGTTCTCTAGAACCTTCAAAGAATGGGTAA
Found at i:1274626 original size:21 final size:21
Alignment explanation
Indices: 1274608--1274647 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1274598 TAACTAATCT
*
1274608 ATTATTTTTAATAAATAATAA
1 ATTATTATTAATAAATAATAA
*
1274629 ATTATTATTAATTAATAAT
1 ATTATTATTAATAAATAAT
1274648 TGTTAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTATTAATAAATAATAA
Found at i:1278539 original size:21 final size:21
Alignment explanation
Indices: 1278513--1278565 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
1278503 TAAAAAAGGT
1278513 AGTACCGATACTCCCTATAGG
1 AGTACCGATACTCCCTATAGG
1278534 AGTACCGATACTCCCTATAGG
1 AGTACCGATACTCCCTATAGG
1278555 AGTACCGATAC
1 AGTACCGATAC
1278566 CCTCTGTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (21 bp):
AGTACCGATACTCCCTATAGG
Found at i:1288158 original size:20 final size:20
Alignment explanation
Indices: 1288108--1288158 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1288098 TCCGTCTCGT
*
1288108 CTCGGCTCGGCACAACACGG
1 CTCGGCTCGGCACAACACGA
** * *
1288128 CAAGGCACGGCACGACACGA
1 CTCGGCTCGGCACAACACGA
1288148 CTCGGCTCGGC
1 CTCGGCTCGGC
1288159 TCGGCTCGTG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.39, G:0.31, T:0.08
Consensus pattern (20 bp):
CTCGGCTCGGCACAACACGA
Found at i:1288339 original size:22 final size:22
Alignment explanation
Indices: 1288314--1288368 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
1288304 TCAGGAGTTA
* *
1288314 TAGGAGTTATTTGATTTAATTC
1 TAGGAGTTATATGATATAATTC
* * *
1288336 TAGGGGTTACATGATATAATTT
1 TAGGAGTTATATGATATAATTC
*
1288358 TGGGAGTTATA
1 TAGGAGTTATA
1288369 ACAACTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.24, T:0.44
Consensus pattern (22 bp):
TAGGAGTTATATGATATAATTC
Found at i:1292595 original size:44 final size:45
Alignment explanation
Indices: 1292469--1292600 Score: 194
Period size: 47 Copynumber: 2.9 Consensus size: 45
1292459 AAAATAATAT
*
1292469 AAAATCCTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACC
1 AAAATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACC
1292514 AAAATACTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTACC
1 AAAATACTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACC
* * * *
1292561 CATATACTTGCCA-TTATTCCAAAAGCTCGTAAGCTTATTT
1 AAAATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
1292601 GTATGCTTAC
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
44 24 0.30
45 15 0.19
46 2 0.03
47 39 0.49
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (45 bp):
AAAATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACC
Found at i:1292801 original size:59 final size:59
Alignment explanation
Indices: 1292709--1292837 Score: 186
Period size: 59 Copynumber: 2.2 Consensus size: 59
1292699 CGTAGTGCTA
* * **
1292709 TCCCGAATATGACACATAAGGTCGTGTCCACCATCTGTACTAGGTATCCTTAAGTACAG
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
* ** *
1292768 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTTAGTGTAT
1 TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
1292827 TCCCGAATATG
1 TCCCGAATATG
1292838 CAGCCTGCTG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (59 bp):
TCCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGGTATCCTTAAGTACAG
Found at i:1298495 original size:15 final size:17
Alignment explanation
Indices: 1298475--1298507 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1298465 GTTAATATTA
1298475 TTAATA-ATT-TATTTT
1 TTAATATATTATATTTT
1298490 TTAATATATTATATTTT
1 TTAATATATTATATTTT
1298507 T
1 T
1298508 GAGCTGCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTAATATATTATATTTT
Found at i:1299655 original size:59 final size:59
Alignment explanation
Indices: 1299556--1299796 Score: 168
Period size: 59 Copynumber: 4.1 Consensus size: 59
1299546 TAGACATTTA
* * * *
1299556 AAAGACTAAAATAGCACAAACATAAATTTAAAGGATTAAAATGGCAATAACAAAAACTT
1 AAAGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGCAATAACAAAAACTT
* ** * * *
1299615 AAAGAACT-AAATAGTAAAAACATAAACTTAAAGTCCTAAAATAGTAATTACATAAACTT
1 AAAG-ACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGCAATAACAAAAACTT
* * * * * * *
1299674 AAAGGA-TCAAAATAG-AAAAA-ATAGAGACTTAAGGGACT-AAATAGAAAAAATAGACATTT
1 AAA-GACT-AAAATAGCAAAAACATA-A-ACTTAAAGGACTAAAATAGCAATAACAAAAACTT
* * * * * * * *
1299733 AAAGAACTAAAATAGTAAAAATAGAAATTTAAGGGACTAAAATAGTAAAAACAAAAATTT
1 AAAG-ACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGCAATAACAAAAACTT
1299793 AAAG
1 AAAG
1299797 GATCAGAATA
Statistics
Matches: 145, Mismatches: 26, Indels: 21
0.76 0.14 0.11
Matches are distributed among these distances:
58 5 0.03
59 91 0.63
60 47 0.32
61 2 0.01
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (59 bp):
AAAGACTAAAATAGCAAAAACATAAACTTAAAGGACTAAAATAGCAATAACAAAAACTT
Found at i:1299704 original size:89 final size:89
Alignment explanation
Indices: 1299544--1299796 Score: 210
Period size: 89 Copynumber: 2.8 Consensus size: 89
1299534 AAATGATATT
* * * * * * * *
1299544 AATAGACATTTAAA-AGACTAAAATAGCACA-AACATAAATTTAAAGGATTAAAATGGCAATAAC
1 AATAGACACTTAAAGA-ACTAAAATAGTA-ATTACATAAACTTAAAGGATCAAAATAGAAAAAAC
1299607 AAAAACTTAAAGAACTAAATAGTAAAA
64 AAAAACTTAAAGAACTAAATAG-AAAA
** *
1299634 ACATA-A-ACTTAAAGTCCTAAAATAGTAATTACATAAACTTAAAGGATCAAAATAGAAAAAATA
1 A-ATAGACACTTAAAGAACTAAAATAGTAATTACATAAACTTAAAGGATCAAAATAGAAAAAACA
* * * *
1299697 GAGACTTAAGGGACTAAATAGAAAA
65 AAAACTTAAAGAACTAAATAGAAAA
* ** * * * * *
1299722 AATAGACATTTAAAGAACTAAAATAGTAAAAATAGAAATTTAAGGGA-CTAAAATAGTAAAAACA
1 AATAGACACTTAAAGAACTAAAATAGTAATTACATAAACTTAAAGGATC-AAAATAGAAAAAACA
*
1299786 AAAATTTAAAG
65 AAAACTTAAAG
1299797 GATCAGAATA
Statistics
Matches: 127, Mismatches: 30, Indels: 13
0.75 0.18 0.08
Matches are distributed among these distances:
87 3 0.02
88 8 0.06
89 111 0.87
90 2 0.02
91 3 0.02
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.22
Consensus pattern (89 bp):
AATAGACACTTAAAGAACTAAAATAGTAATTACATAAACTTAAAGGATCAAAATAGAAAAAACAA
AAACTTAAAGAACTAAATAGAAAA
Found at i:1299753 original size:30 final size:30
Alignment explanation
Indices: 1299438--1299798 Score: 212
Period size: 30 Copynumber: 12.1 Consensus size: 30
1299428 GTATTTATTT
* * *
1299438 AGGACTAAAAT-GCAAAGATAGAAAATTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* * * *
1299467 A-GAGTCAAAATAGCAATAATAGAAAGTTAA
1 AGGACT-AAAATAGTAAAAATAGAAACTTAA
* * * *
1299497 AGAACCAAAACAGTAAAAATGGAAACTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* ** * *
1299527 GGGACTAAAAT-GATATTAATAGACATTTAA
1 AGGACTAAAATAG-TAAAAATAGAAACTTAA
* * * * * *
1299557 AAGACTAAAATAGCACAAACATAAATTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* * * * * *
1299587 AGGATTAAAATGGCAATAACAAAAACTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* * *
1299617 AGAACT-AAATAGTAAAAACATAAACTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
** ** * *
1299646 AGTCCTAAAATAGTAATTACATAAACTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* *
1299676 AGGA-TCAAAATAGAAAAAATAGAGACTTAA
1 AGGACT-AAAATAGTAAAAATAGAAACTTAA
* * * *
1299706 GGGACT-AAATAGAAAAAATAGACATTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* *
1299735 AGAACTAAAATAGTAAAAATAGAAATTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
* * * *
1299765 GGGACTAAAATAGTAAAAACAAAAATTTAA
1 AGGACTAAAATAGTAAAAATAGAAACTTAA
1299795 AGGA
1 AGGA
1299799 TCAGAATAGC
Statistics
Matches: 257, Mismatches: 66, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
28 3 0.01
29 56 0.22
30 195 0.76
31 3 0.01
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21
Consensus pattern (30 bp):
AGGACTAAAATAGTAAAAATAGAAACTTAA
Found at i:1300004 original size:43 final size:43
Alignment explanation
Indices: 1299950--1300039 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
1299940 CATTAAAGTA
*
1299950 TAATGACCTCGGCACAAATATATACATACACGTGTTTAAAAGC
1 TAATGAACTCGGCACAAATATATACATACACGTGTTTAAAAGC
1299993 TAATGAACTCGGCACAAATATATACATACACGTGTTTAAAAGC
1 TAATGAACTCGGCACAAATATATACATACACGTGTTTAAAAGC
1300036 TAAT
1 TAAT
1300040 AAGGATCAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (43 bp):
TAATGAACTCGGCACAAATATATACATACACGTGTTTAAAAGC
Found at i:1301578 original size:47 final size:47
Alignment explanation
Indices: 1301504--1301861 Score: 388
Period size: 47 Copynumber: 7.9 Consensus size: 47
1301494 TCAGGTCAGT
* * ** *
1301504 TGATGACACTGCTCATACTATGATAAGTTTTGGCCATCTAGGAACGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
1301551 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
1301598 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
* ** *
1301645 TGATAACACTGCTTATACTATGATAAGTCTTCTTTATCTA-G--GGC
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
* * ** * *
1301689 TG---ACACGGCTCCTACGTGATGAGGAGATC-AGG---T-T--G---GT
1 TGATAACACTGCTCATAC-T-ATGATAAG-TCTTGGTTATCTAGGAAGGG
* * **
1301726 TGATGACAATGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
*
1301773 TGATAACACTGCTCATGCTATGATAAGTCTTGGTTATCTAGGAAGGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
*
1301820 TGATAATACTGCTCATACTATGATAAGTCTTGGTTATCTAGG
1 TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGG
1301862 GTTGACACGA
Statistics
Matches: 263, Mismatches: 32, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
37 5 0.02
38 9 0.03
39 2 0.01
40 11 0.04
41 11 0.04
42 2 0.01
43 6 0.02
44 7 0.03
46 1 0.00
47 209 0.79
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (47 bp):
TGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGG
Found at i:1301741 original size:175 final size:175
Alignment explanation
Indices: 1301549--1301989 Score: 697
Period size: 175 Copynumber: 2.5 Consensus size: 175
1301539 ATCTAGGAAC
* **
1301549 GGTGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAACACTGCTCAT
1 GGTGATGACACTGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCAT
* *
1301614 ACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAACACTGCTTATACTATGATAAGTCTTCTT
66 ACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTCGT
* *
1301679 TATCTAGGGCTGACACGGCTCCTACGTGATGAGGAGATCA-GGT-T
131 TATCTAGGGCTGACACGACTCCTACGTGATGAGGAGAT-ATGGTCA
*
1301723 GGTTGATGACAATGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCA
1 GG-TGATGACACTGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCA
* * *
1301788 TGCTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAATACTGCTCATACTATGATAAGTCTTGG
65 TACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTCG
* * *
1301853 TTATCTAGGGTTGACACGACTCCTACGTTATTAGGAGATATGGTCA
130 TTATCTAGGGCTGACACGACTCCTACGTGATGAGGAGATATGGTCA
* * *
1301899 GGGGATGACACTGCTCACACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTACTCAT
1 GGTGATGACACTGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCAT
1301964 ACTATGATAAGTCTTGGTTATCTAGG
66 ACTATGATAAGTCTTGGTTATCTAGG
1301990 GTGGACACTG
Statistics
Matches: 245, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
174 3 0.01
175 240 0.98
176 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (175 bp):
GGTGATGACACTGCTCATACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCAT
ACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTCGT
TATCTAGGGCTGACACGACTCCTACGTGATGAGGAGATATGGTCA
Found at i:1301853 original size:222 final size:222
Alignment explanation
Indices: 1301456--1301861 Score: 733
Period size: 222 Copynumber: 1.8 Consensus size: 222
1301446 GGACGACTGG
*
1301456 TTATCTGAGGGTGACACGGCTCCTACGTGATGAGGAGATCAGGTCAGTTGATGACACTGCTCATA
1 TTATCTGAGGGTGACACGGCTCCTACGTGATGAGGAGATCAGGTCAGTTGATGACAATGCTCATA
*
1301521 CTATGATAAGTTTTGGCCATCTAGGAACGGTGATAACACTGCTCATACTATGATAAGTCTTGGTT
66 CTATGATAAGTCTTGGCCATCTAGGAACGGTGATAACACTGCTCATACTATGATAAGTCTTGGTT
1301586 ATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAA
131 ATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAA
1301651 CACTGCTTATACTATGATAAGTCTTCT
196 CACTGCTTATACTATGATAAGTCTTCT
**
1301678 TTATCT-AGGGCTGACACGGCTCCTACGTGATGAGGAGATCAGGTTGGTTGATGACAATGCTCAT
1 TTATCTGAGGG-TGACACGGCTCCTACGTGATGAGGAGATCAGGTCAGTTGATGACAATGCTCAT
* *
1301742 ACTATGATAAGTCTTGGCCATCTAGGAAGGGTGATAACACTGCTCATGCTATGATAAGTCTTGGT
65 ACTATGATAAGTCTTGGCCATCTAGGAACGGTGATAACACTGCTCATACTATGATAAGTCTTGGT
*
1301807 TATCTAGGAAGGGTGATAATACTGCTCATACTATGATAAGTCTTGGTTATCTAGG
130 TATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGG
1301862 GTTGACACGA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
221 4 0.02
222 172 0.98
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (222 bp):
TTATCTGAGGGTGACACGGCTCCTACGTGATGAGGAGATCAGGTCAGTTGATGACAATGCTCATA
CTATGATAAGTCTTGGCCATCTAGGAACGGTGATAACACTGCTCATACTATGATAAGTCTTGGTT
ATCTAGGAAGGGTGATAACACTGCTCATACTATGATAAGTCTTGGTTATCTAGGAAGGGTGATAA
CACTGCTTATACTATGATAAGTCTTCT
Found at i:1301975 original size:47 final size:46
Alignment explanation
Indices: 1301898--1301989 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 46
1301888 AGATATGGTC
* *
1301898 AGGGGATGACACTGCTCACACTATGATAAGTCTTGGCCATCTAGGA
1 AGGGGATAACACTACTCACACTATGATAAGTCTTGGCCATCTAGGA
* **
1301944 AGGGTGATAACACTACTCATACTATGATAAGTCTTGGTTATCTAGG
1 AGGG-GATAACACTACTCACACTATGATAAGTCTTGGCCATCTAGG
1301990 GTGGACACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 4 0.10
47 36 0.90
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (46 bp):
AGGGGATAACACTACTCACACTATGATAAGTCTTGGCCATCTAGGA
Found at i:1302121 original size:123 final size:123
Alignment explanation
Indices: 1301978--1302389 Score: 637
Period size: 123 Copynumber: 3.3 Consensus size: 123
1301968 TGATAAGTCT
* * * *
1301978 TGGTTATCTAGGGTGGACACTGGTCATATGCGATGAGTCTTGGCCAGGGGATGGTACTACTCATA
1 TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGGCCAGGGGATGGTACTGCTCATA
* * *
1302043 TGCAATGAGTCTTGACCATATAAAAGTGATAACACGGTTCCTACGTGATGAGGATGAC
66 TTCGATGAGTCTTGACCATATAAAAGTGATAACACGGTTCCTACGTGATGAGGATGGC
* *
1302101 TGGTTATCAAGGGTTGACACTACTCATATGCGATGAGTCTTGGCCAGGGGATGATACTGCTCATA
1 TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGGCCAGGGGATGGTACTGCTCATA
* * * * *
1302166 TTCGATGAGTATTGGCCATATAAAGGTGATAACATC-GTTCCTACATGATGAGGACGGC
66 TTCGATGAGTCTTGACCATATAAAAGTGATAACA-CGGTTCCTACGTGATGAGGATGGC
*
1302224 TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGGCCAAGGGATGGTACTGCTCATA
1 TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGGCCAGGGGATGGTACTGCTCATA
* * *
1302289 TTCGATGAGTCTTGATCATATAAAAGTGATAACATGGTTTCTACGTGATGAGGATGGC
66 TTCGATGAGTCTTGACCATATAAAAGTGATAACACGGTTCCTACGTGATGAGGATGGC
*
1302347 TGGTTATCAAGGGTTGACACTGCTCATATGTGATGAGTCTTGG
1 TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGG
1302390 TTAGGGAATT
Statistics
Matches: 261, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
123 260 1.00
124 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (123 bp):
TGGTTATCAAGGGTTGACACTGCTCATATGCGATGAGTCTTGGCCAGGGGATGGTACTGCTCATA
TTCGATGAGTCTTGACCATATAAAAGTGATAACACGGTTCCTACGTGATGAGGATGGC
Found at i:1304169 original size:24 final size:23
Alignment explanation
Indices: 1304128--1304172 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
1304118 ATTTTGTCAT
1304128 AAAAATTGGCTCCCTTTCCCCCC
1 AAAAATTGGCTCCCTTTCCCCCC
*
1304151 AAAAATTGGCTCCCTTTTCCCC
1 AAAAATTGGCTCCCTTTCCCCC
1304173 AACTTCAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.22, C:0.40, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAAATTGGCTCCCTTTCCCCCC
Found at i:1307780 original size:63 final size:63
Alignment explanation
Indices: 1307681--1307807 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 63
1307671 ATTTATGATG
* * * * *
1307681 ATCATGTAGAATGCAAAGATGAAAATGTAGATGCAAAAGTGATGATCATATGAAATGCAATGC
1 ATCATGCAAAATGCAAAGATGAAAATGCAGATGCAAAAGTAATGATCATATGAAATACAATGC
* * * * *
1307744 ATCATGCAAAATGCGAAGATGCAAATGCAGATGCAAAATTAATGATCCTCTGAAATACAATGC
1 ATCATGCAAAATGCAAAGATGAAAATGCAGATGCAAAAGTAATGATCATATGAAATACAATGC
1307807 A
1 A
1307808 AAAAGGGACT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (63 bp):
ATCATGCAAAATGCAAAGATGAAAATGCAGATGCAAAAGTAATGATCATATGAAATACAATGC
Found at i:1308915 original size:16 final size:18
Alignment explanation
Indices: 1308892--1308931 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
1308882 TAAAAACTTC
1308892 ATAAAAACAATTT-TAAG
1 ATAAAAACAATTTGTAAG
*
1308909 A-AAAAACATTTTGTAAG
1 ATAAAAACAATTTGTAAG
1308926 ATAAAA
1 ATAAAA
1308932 GTTGGTCTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 10 0.50
17 6 0.30
18 4 0.20
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (18 bp):
ATAAAAACAATTTGTAAG
Found at i:1309624 original size:30 final size:30
Alignment explanation
Indices: 1309590--1309885 Score: 183
Period size: 30 Copynumber: 9.9 Consensus size: 30
1309580 TTAAAGAGCC
* * *
1309590 AAAATAGCAATAACAGAAAGTTAAAGCACT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* * *
1309620 AAAATAGTAAAAA-TGAAAACTTAAGGGACT
1 AAAATAGCAAAAACAG-AAACTTAAAGGACT
* * *
1309650 AAAAT-G-ATATTAACA-AACATTTAAAAGACT
1 AAAATAGCA-A-AAACAGAA-ACTTAAAGGACT
* *
1309680 AAAATAGCAAAAACAGAAATTTAAAGGATT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* * * *
1309710 AAAATGGCAACAACATAAACTTAAAGAACT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* **
1309740 -AAATAGCAAAAACATAAACTTAAAGTCCT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* ** *
1309769 AAAATAGTAATTACATAAACTTAAAGGAC-
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* * * * *
1309798 CAAATAGCAAAAATAGAGAGTTAAGGGACT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
* * * *
1309828 -ATATAGCAAAAATAGACATTTAAAGGACT
1 AAAATAGCAAAAACAGAAACTTAAAGGACT
** * *
1309857 AAAATATTAAAAAATAGAAATTTAAAGGA
1 AAAATA-GCAAAAACAGAAACTTAAAGGA
1309886 TCAGAATAGC
Statistics
Matches: 208, Mismatches: 46, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.00
29 75 0.36
30 108 0.52
31 23 0.11
32 1 0.00
ACGTcount: A:0.56, C:0.10, G:0.12, T:0.21
Consensus pattern (30 bp):
AAAATAGCAAAAACAGAAACTTAAAGGACT
Found at i:1309752 original size:59 final size:58
Alignment explanation
Indices: 1309590--1309836 Score: 162
Period size: 59 Copynumber: 4.2 Consensus size: 58
1309580 TTAAAGAGCC
* * * * * *
1309590 AAAATAGCAATAACAGAAAGTTAAAGCACTAAAATAGTAAAAA-TGAAAACTTAAGGGACT
1 AAAATAGCAACAACATAAACTTAAAG-ACT-AAATAGCAAAAACAG-AAACTTAAAGGACT
* * * *
1309650 AAAAT-G-ATATTAACA-AACATTTAAAAGACTAAAATAGCAAAAACAGAAATTTAAAGGATT
1 AAAATAGCA-A-CAACATAA-ACTT-AAAGACT-AAATAGCAAAAACAGAAACTTAAAGGACT
* * **
1309710 AAAATGGCAACAACATAAACTTAAAGAACTAAATAGCAAAAACATAAACTTAAAGTCCT
1 AAAATAGCAACAACATAAACTTAAAG-ACTAAATAGCAAAAACAGAAACTTAAAGGACT
* ** * * * * *
1309769 AAAATAGTAATTACATAAACTTAAAGGACCAAATAGCAAAAATAGAGAGTTAAGGGACT
1 AAAATAGCAACAACATAAACTTAAA-GACTAAATAGCAAAAACAGAAACTTAAAGGACT
*
1309828 -ATATAGCAA
1 AAAATAGCAA
1309837 AAATAGACAT
Statistics
Matches: 150, Mismatches: 27, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
58 8 0.05
59 77 0.51
60 55 0.37
61 9 0.06
62 1 0.01
ACGTcount: A:0.56, C:0.11, G:0.13, T:0.20
Consensus pattern (58 bp):
AAAATAGCAACAACATAAACTTAAAGACTAAATAGCAAAAACAGAAACTTAAAGGACT
Found at i:1310616 original size:10 final size:10
Alignment explanation
Indices: 1310603--1310634 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
1310593 CTCCTCTTAC
1310603 TTTCTTTATT
1 TTTCTTTATT
1310613 TTTCTTTATT
1 TTTCTTTATT
*
1310623 TTTTTTTATT
1 TTTCTTTATT
1310633 TT
1 TT
1310635 GTTCGATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTCTTTATT
Found at i:1311580 original size:14 final size:14
Alignment explanation
Indices: 1311558--1311592 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
1311548 GTGGGGTAAG
1311558 GCGCACCCTCTGTA
1 GCGCACCCTCTGTA
*
1311572 GCGCGCCCTCTGTA
1 GCGCACCCTCTGTA
1311586 GCGCACC
1 GCGCACC
1311593 TTATGCTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.46, G:0.26, T:0.17
Consensus pattern (14 bp):
GCGCACCCTCTGTA
Found at i:1315116 original size:75 final size:75
Alignment explanation
Indices: 1314993--1315142 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
1314983 ACTTTAATTT
1314993 GCATTTACTTAAAGTTAATGTCATTCGATAACCGCTGATGAAGATTAAAAAACGATACAAGAAAA
1 GCATTTACTTAAAGTTAATGTCATTCGATAACCGCTGATGAAGATTAAAAAACGATACAAGAAAA
1315058 CGAGATTGGA
66 CGAGATTGGA
1315068 GCATTTACTTAAAGTTAATGTCATTCGATAACCGCTGATGAAGATTAAAAAACGATACAAGAAAA
1 GCATTTACTTAAAGTTAATGTCATTCGATAACCGCTGATGAAGATTAAAAAACGATACAAGAAAA
1315133 CGAGATTGGA
66 CGAGATTGGA
1315143 CGTTGGCGTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (75 bp):
GCATTTACTTAAAGTTAATGTCATTCGATAACCGCTGATGAAGATTAAAAAACGATACAAGAAAA
CGAGATTGGA
Found at i:1315398 original size:33 final size:33
Alignment explanation
Indices: 1315325--1315403 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 33
1315315 AATAACTGAT
*
1315325 ATTAACCAAAATACATTAACAAAAAGTCCAACAA
1 ATTAA-CAAAATAAATTAACAAAAAGTCCAACAA
1315359 ATTTAACAAAATAAATTAA-AATAAA-TCCAACCAA
1 A-TTAACAAAATAAATTAACAA-AAAGTCCAA-CAA
*
1315393 ATTAACGAAAT
1 ATTAACAAAAT
1315404 TAAGTAAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 16 0.40
34 20 0.50
35 4 0.10
ACGTcount: A:0.59, C:0.16, G:0.03, T:0.22
Consensus pattern (33 bp):
ATTAACAAAATAAATTAACAAAAAGTCCAACAA
Found at i:1317740 original size:17 final size:18
Alignment explanation
Indices: 1317722--1317754 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
1317712 TAATTAAATA
1317722 AAATA-TTAAA-AAATTT
1 AAATACTTAAATAAATTT
1317738 AAATACTTAAATAAATT
1 AAATACTTAAATAAATT
1317755 ACAAACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATACTTAAATAAATTT
Found at i:1320166 original size:14 final size:14
Alignment explanation
Indices: 1320147--1320190 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
1320137 TCTATATTAT
*
1320147 TTATAATCATTATA
1 TTATAATCATTAAA
1320161 TTATAA--ATTTAAA
1 TTATAATCA-TTAAA
1320174 TTATAATCATTAAA
1 TTATAATCATTAAA
1320188 TTA
1 TTA
1320191 ATTTTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.38
14 14 0.54
15 1 0.04
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (14 bp):
TTATAATCATTAAA
Found at i:1322648 original size:29 final size:29
Alignment explanation
Indices: 1322605--1322661 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
1322595 TATATATATT
* *
1322605 TTTTTAAAAACGTTTTCAAAATTATATAG
1 TTTTCAAAAACGTTTTCAAAACTATATAG
* *
1322634 TTTTCAAAAATGTTTTTAAAACTATATA
1 TTTTCAAAAACGTTTTCAAAACTATATA
1322662 TTATAAGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (29 bp):
TTTTCAAAAACGTTTTCAAAACTATATAG
Found at i:1322754 original size:106 final size:106
Alignment explanation
Indices: 1322617--1322826 Score: 248
Period size: 106 Copynumber: 2.0 Consensus size: 106
1322607 TTTAAAAACG
* * * *
1322617 TTTTCAAAATTATATAGTTTTCAAAAATG-TTTTTAAAACTATATATTATAAGTTTTT-AAAATG
1 TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAACG
* *
1322680 ATTTCAAAACTATATAATATATATATGTTTTCAAAATGTTTCT
66 ATTTAAAAACTATAT-AT-TATATATATTTTCAAAATGTTTCT
* **
1322723 TTTTAAAAATTATATTTA-TTTT-AAAAATGTTTTTTAAAACCGTATAATATATTTTTTTAAAAA
1 TTTTAAAAATTATA--TAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAA
* * *
1322786 CGTTTTAAAAACTATATATTATATTTATTTTCAAAGTGTTT
64 CGATTTAAAAACTATATATTATATATATTTTCAAAATGTTT
1322827 TAAAAACTAT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
106 39 0.44
107 29 0.33
108 20 0.23
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (106 bp):
TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAACG
ATTTAAAAACTATATATTATATATATTTTCAAAATGTTTCT
Found at i:1322783 original size:36 final size:36
Alignment explanation
Indices: 1322634--1322883 Score: 165
Period size: 36 Copynumber: 6.9 Consensus size: 36
1322624 AATTATATAG
* * **
1322634 TTTTCAAAAATGTTTTTAAAACTATATATTATAAGT-
1 TTTT-AAAAATGTTTTAAAAACTATATAATATATTTA
* * *
1322670 TTTT-AAAATGATTTCAAAACTATATAATATATATATG
1 TTTTAAAAATGTTTTAAAAACTATATAATATAT-T-TA
* **
1322707 TTTTCAAAATGTTTCTTTTTAAA--A-AT--TATATTTA
1 TTTTAAAAATG--T-TTTAAAAACTATATAATATATTTA
* **
1322741 TTTTAAAAATGTTTTTTAAAACCGTATAATATATTT-
1 TTTTAAAAATG-TTTTAAAAACTATATAATATATTTA
* *
1322777 TTTTAAAAACGTTTTAAAAACTATATATTATATTTA
1 TTTTAAAAATGTTTTAAAAACTATATAATATATTTA
* * **
1322813 TTTTCAAAGTGTTTTAAAAACTATATAATATATAAA
1 TTTTAAAAATGTTTTAAAAACTATATAATATATTTA
* * *
1322849 TGTTTCAAATATGTTTTCAAAACTATATTATATAT
1 T-TTT-AAAAATGTTTTAAAAACTATATAATATAT
1322884 ATATATATAT
Statistics
Matches: 171, Mismatches: 28, Indels: 28
0.75 0.12 0.12
Matches are distributed among these distances:
32 7 0.04
33 2 0.01
34 35 0.20
35 23 0.13
36 51 0.30
37 14 0.08
38 32 0.19
39 1 0.01
41 6 0.04
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.48
Consensus pattern (36 bp):
TTTTAAAAATGTTTTAAAAACTATATAATATATTTA
Found at i:1322884 original size:2 final size:2
Alignment explanation
Indices: 1322872--1322912 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
1322862 TTTTCAAAAC
*
1322872 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1322913 AAAAAAATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1323675 original size:84 final size:82
Alignment explanation
Indices: 1323545--1324506 Score: 987
Period size: 84 Copynumber: 11.6 Consensus size: 82
1323535 GAACTCGGGA
* * * ** *
1323545 GTCTTTGG--CAGATAGCCCTTCTCGACTTAAGCTATGTTGCATATGATGTGCCTTGGAGCTGAG
1 GTCTTTGGTCCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGCTGAG
1323608 CGTAGTCGAACTCAAAG
66 CGTAGTCGAACTCAAAG
* * * * * *
1323625 GTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
1 GTC-TTTGGTC-CAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG-CCTTGGAGCT
* * * ***
1323690 GAGTGTAATCAAACTCGGGG
63 GAGCGTAGTCGAACTCAAAG
* * *
1323710 GTCTTTGG--CAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGA
1 GTCTTTGGTCCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCC-TTGGAGCTGA
1323772 GCGTAGTCGAACTCAAAG
65 GCGTAGTCGAACTCAAAG
* * * *
1323790 GTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTG
1 GTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGCTG
*
1323855 AGCGTAGTCGAACTCGAAG
64 AGCGTAGTCGAACTCAAAG
* * * * *
1323874 GTCTTTGGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
1 GTCTTTGG-T-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG-CCTTGGAGCT
* * * ***
1323939 GAGTGTAATTGAACTCGGGG
63 GAGCGTAGTCGAACTCAAAG
* * *
1323959 GTCTTTGG--CAGATAGCCCTTCTTGACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTGA
1 GTCTTTGGTCCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCC-TTGGAGCTGA
1324021 GCGTAGTCGAACTCAAAG
65 GCGTAGTCGAACTCAAAG
* * * *
1324039 GTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTG
1 GTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGCTG
*
1324104 AGCGTAGTCGAACTCGAAG
64 AGCGTAGTCGAACTCAAAG
* * * * * *
1324123 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
1 GTCTTTGG-T-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTG-CCTTGGAGCT
* * ***
1324188 GAGTGTAATCGAACTCGGGG
63 GAGCGTAGTCGAACTCAAAG
* *
1324208 GTCTTTGG--CAGATAGCCCTTCTCA-ACTTAAGCTATACTGCAAATGATGTGCCGTT-GAGCTG
1 GTCTTTGGTCCAGATAACCCTTCT-AGACTTAAGTTATACTGCAAATGATGTGCC-TTGGAGCTG
1324269 AGCGTAGTCGAACTCAAAG
64 AGCGTAGTCGAACTCAAAG
* * * * *
1324288 GTCTTTTGTTGCCAGACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTG
1 GTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGCTG
1324353 AGCGTAGTCGAACTCAAAG
64 AGCGTAGTCGAACTCAAAG
* * *
1324372 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTT-GAGCT
1 GTCTTTGG-T-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCC-TTGGAGCT
1324436 GAGCGTAGTCGAACTCAAAG
63 GAGCGTAGTCGAACTCAAAG
* * * *
1324456 GTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTACTGCAAATGAT
1 GTC-TTTGGT-CCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGAT
1324507 TTGTTTTTTT
Statistics
Matches: 734, Mismatches: 116, Indels: 60
0.81 0.13 0.07
Matches are distributed among these distances:
80 73 0.10
81 130 0.18
83 19 0.03
84 418 0.57
85 94 0.13
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (82 bp):
GTCTTTGGTCCAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCTTGGAGCTGAG
CGTAGTCGAACTCAAAG
Found at i:1323998 original size:249 final size:249
Alignment explanation
Indices: 1323560--1324506 Score: 1533
Period size: 249 Copynumber: 3.8 Consensus size: 249
1323550 TGGCAGATAG
* * *
1323560 CCCTTCTCGACTTAAGCTATGT--TGCATATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAA
1 CCCTTCTAGACTTAAG-T-TGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAA
** * * * *
1323623 AGGTCTTTTGG-TCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAA
64 AGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAA
*
1323687 GCTGAGTGTAATCAAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAA
128 GCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAA
1323752 ATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
193 ATGATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
*
1323809 CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
*
1323874 GTCTTTGGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
66 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
* *
1323939 GAGTGTAATTGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATACTGCAAATG
131 GAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATG
1324004 ATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
196 ATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
*
1324058 CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
1 CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
*
1324123 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGCCCTCGAAGCT
66 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
*
1324188 GAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCAACTTAAGCTATACTGCAAATG
131 GAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATG
1324253 ATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
196 ATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
*
1324307 CCCTTCTAGACTTAAGTTGTGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
1 CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
* *
1324372 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCGTTG-AGCT
66 GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
* * *** * * * * *
1324436 GAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGACAACCCTTCTAGACTTAAGTTGTACTGCA
131 GAGTGTAATCGAACTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCA
1324501 AATGAT
192 AATGAT
1324507 TTGTTTTTTT
Statistics
Matches: 657, Mismatches: 34, Indels: 11
0.94 0.05 0.02
Matches are distributed among these distances:
247 3 0.00
248 28 0.04
249 588 0.89
251 1 0.00
252 37 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (249 bp):
CCCTTCTAGACTTAAGTTGTACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCT
GAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATACTGCAAATG
ATGTGCCGTTGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGCCAGACAA
Found at i:1326264 original size:94 final size:94
Alignment explanation
Indices: 1326103--1326290 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
1326093 TTATGCAAAG
*
1326103 AAAAGGTTGTATTGGTTAATTGCGAGAGCAGGGTACGGTGTTTGAGTGTATATTCTGGGTAAGGT
1 AAAAGGTTGTATTAGTTAATTGCGAGAGCAGGGTACGGTGTTTGAGTGTATATTCTGGGTAAGGT
1326168 CAAAGTCCTTGTTTTAAATCATGTTACTT
66 CAAAGTCCTTGTTTTAAATCATGTTACTT
1326197 AAAAGGTTGTATTAGTTAATTGCGAGAGCAGGGTACGGTGTTTGAGTGTATATTCTGGGTAAGGT
1 AAAAGGTTGTATTAGTTAATTGCGAGAGCAGGGTACGGTGTTTGAGTGTATATTCTGGGTAAGGT
1326262 CAAAGTCCTTGTTTTAAATCATGTTACTT
66 CAAAGTCCTTGTTTTAAATCATGTTACTT
1326291 CGTCAAAGAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.26, C:0.10, G:0.27, T:0.37
Consensus pattern (94 bp):
AAAAGGTTGTATTAGTTAATTGCGAGAGCAGGGTACGGTGTTTGAGTGTATATTCTGGGTAAGGT
CAAAGTCCTTGTTTTAAATCATGTTACTT
Found at i:1328010 original size:19 final size:19
Alignment explanation
Indices: 1327986--1328031 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
1327976 AGTTAATGTG
1327986 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
1328005 AATGCAAAGAAAATAACAA
1 AATGCAAAGAAAATAACAA
1328024 AATGCAAA
1 AATGCAAA
1328032 ATGTCTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11
Consensus pattern (19 bp):
AATGCAAAGAAAATAACAA
Found at i:1331318 original size:29 final size:29
Alignment explanation
Indices: 1331279--1331342 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
1331269 TTATATATTA
* * *
1331279 TATATATTTTTTAAAAACGTTTTCAAAAT
1 TATATAGTTTTCAAAAACGTTTTCAAAAC
* *
1331308 TATATAGTTTTCAAAAATGTTTTTAAAAC
1 TATATAGTTTTCAAAAACGTTTTCAAAAC
1331337 TATATA
1 TATATA
1331343 TTATAAGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47
Consensus pattern (29 bp):
TATATAGTTTTCAAAAACGTTTTCAAAAC
Found at i:1331346 original size:36 final size:36
Alignment explanation
Indices: 1331306--1331562 Score: 146
Period size: 36 Copynumber: 7.2 Consensus size: 36
1331296 CGTTTTCAAA
1331306 ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
1 ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
* * *
1331342 ATTATA-AGTTTT-TAAAATGATTTCAAAACTATAT
1 ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
1331376 AATATATATATGTTTTC-AAAATGTTTCTTTTTAAAA--AT-T
1 -AT-TATATA-GTTTTCAAAAATG----TTTTTAAAACTATAT
* **
1331415 A-TATTTA-TTTT-AAAAATGTTTTTTAAAACCGTAT
1 ATTATATAGTTTTCAAAAATG-TTTTTAAAACTATAT
* * * * *
1331449 AATATAT-TTTTTTAAAAACGTTTTAAAAACTATAT
1 ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
* * *
1331484 ATTATATTTA-TTTTC-TAAGTGTTTTAAAAACTATAT
1 ATTATA--TAGTTTTCAAAAATGTTTTTAAAACTATAT
* * * *
1331520 AATATATAAATGTTTCAAATATGTTTTCAAAA-T-TAT
1 ATTATAT-AGT-TTTCAAAAATGTTTTTAAAACTATAT
1331556 ATTATAT
1 ATTATAT
1331563 TATATATATA
Statistics
Matches: 174, Mismatches: 24, Indels: 46
0.71 0.10 0.19
Matches are distributed among these distances:
31 9 0.05
33 1 0.01
34 32 0.18
35 34 0.20
36 54 0.31
37 11 0.06
38 23 0.13
39 1 0.01
40 2 0.01
42 7 0.04
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.48
Consensus pattern (36 bp):
ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
Found at i:1331430 original size:106 final size:108
Alignment explanation
Indices: 1331298--1331490 Score: 250
Period size: 107 Copynumber: 1.8 Consensus size: 108
1331288 TTTAAAAACG
* * * *
1331298 TTTTCAAAATTATATAGTTTTCAAAAATG-TTTTTAAAACTATATATTATAAGTTTTT-AAAATG
1 TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAACG
*
1331361 ATTTCAAAACTATATAATATATATATGTTTTCAAAATGTTTCT
66 ATTTAAAAACTATATAATATATATATGTTTTCAAAATGTTTCT
* **
1331404 TTTTAAAAATTATATTTA-TTTT-AAAAATGTTTTTTAAAACCGTATAATATATTTTTTTAAAAA
1 TTTTAAAAATTATA--TAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAA
* *
1331467 CGTTTTAAAAACTATATATTATAT
64 CGATTTAAAAACTATATAATATAT
1331491 TTATTTTCTA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
106 20 0.27
107 27 0.37
108 26 0.36
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (108 bp):
TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTTAAAACCATATAATATAAGTTTTTAAAAACG
ATTTAAAAACTATATAATATATATATGTTTTCAAAATGTTTCT
Found at i:1331498 original size:106 final size:106
Alignment explanation
Indices: 1331298--1331507 Score: 239
Period size: 106 Copynumber: 2.0 Consensus size: 106
1331288 TTTAAAAACG
* * * *
1331298 TTTTCAAAATTATATAGTTTTCAAAAATGTTTTTAAAACTATATATTATAAGTTTTTAAAATGAT
1 TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTAAAACCATATAATATAAGTTTTTAAAACGAT
* *
1331363 TTCAAAACTATATAATATATATATGTTTTCAAAATGTTTCT
66 TTAAAAACTATATAATATATATATATTTTCAAAATGTTTCT
* **
1331404 TTTTAAAAATTATATTTA-TTTT-AAAAATGTTTTTTAAAACCGTATAATATATTTTTTTAAAAA
1 TTTTAAAAATTATA--TAGTTTTCAAAAATG-TTTTTAAAACCATATAATATAAGTTTTT-AAAA
* * * *
1331467 CGTTTTAAAAACTATAT-AT-TATATTTATTTTCTAAGTGTTT
62 CGATTTAAAAACTATATAATATATATATATTTTCAAAATGTTT
1331508 TAAAAACTAT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
106 38 0.44
107 29 0.33
108 20 0.23
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.50
Consensus pattern (106 bp):
TTTTAAAAATTATATAGTTTTCAAAAATGTTTTTAAAACCATATAATATAAGTTTTTAAAACGAT
TTAAAAACTATATAATATATATATATTTTCAAAATGTTTCT
Found at i:1333207 original size:32 final size:32
Alignment explanation
Indices: 1333171--1333262 Score: 121
Period size: 32 Copynumber: 2.9 Consensus size: 32
1333161 TAAAAATTAT
* * *
1333171 AAAATGATCATTAAATTTATCAATTTTTTCAC
1 AAAATAATCATTAAATTTTTAAATTTTTTCAC
* * * *
1333203 AAAATAATCGTTCAATTTTTTAATTTTTTTAC
1 AAAATAATCATTAAATTTTTAAATTTTTTCAC
1333235 AAAATAATCATTAAATTTTTAAATTTTT
1 AAAATAATCATTAAATTTTTAAATTTTT
1333263 AAATTTATTA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (32 bp):
AAAATAATCATTAAATTTTTAAATTTTTTCAC
Found at i:1340308 original size:21 final size:21
Alignment explanation
Indices: 1340282--1340386 Score: 138
Period size: 21 Copynumber: 5.0 Consensus size: 21
1340272 CCATGAACAG
* *
1340282 TGCTACAGTGTACTGATGAAC
1 TGCTACAGTGTACCGATGCAC
1340303 TGCTACAGTGTACCGATGCAC
1 TGCTACAGTGTACCGATGCAC
*
1340324 TACTACAGTGTACCGATGCAC
1 TGCTACAGTGTACCGATGCAC
* *
1340345 TGCTAAAGTGTATCGATGCAC
1 TGCTACAGTGTACCGATGCAC
* * *
1340366 TACTACAATGTATCGATGCAC
1 TGCTACAGTGTACCGATGCAC
1340387 AAAAACATCG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (21 bp):
TGCTACAGTGTACCGATGCAC
Found at i:1340347 original size:42 final size:42
Alignment explanation
Indices: 1340284--1340386 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
1340274 ATGAACAGTG
* * *
1340284 CTACAGTGTACTGATGAACTGCTACAGTGTACCGATGCACTA
1 CTACAGTGTACCGATGCACTGCTAAAGTGTACCGATGCACTA
*
1340326 CTACAGTGTACCGATGCACTGCTAAAGTGTATCGATGCACTA
1 CTACAGTGTACCGATGCACTGCTAAAGTGTACCGATGCACTA
* *
1340368 CTACAATGTATCGATGCAC
1 CTACAGTGTACCGATGCAC
1340387 AAAAACATCG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
CTACAGTGTACCGATGCACTGCTAAAGTGTACCGATGCACTA
Found at i:1340432 original size:21 final size:21
Alignment explanation
Indices: 1340407--1340490 Score: 123
Period size: 21 Copynumber: 4.0 Consensus size: 21
1340397 AATATAAATT
* *
1340407 GTGTATCGATGCACAACTACA
1 GTGTATCGATGTACTACTACA
*
1340428 GTGTATCGATGTACTACTATA
1 GTGTATCGATGTACTACTACA
*
1340449 GTGTATCGATGTACTGCTACA
1 GTGTATCGATGTACTACTACA
*
1340470 GTGTATCGATGTACTGCTACA
1 GTGTATCGATGTACTACTACA
1340491 ATAACTTCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (21 bp):
GTGTATCGATGTACTACTACA
Found at i:1341261 original size:24 final size:24
Alignment explanation
Indices: 1341234--1341296 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
1341224 CACCACAACT
* *
1341234 CATATAAATTGTACCGAAGTGCCA
1 CATAGAAATTGCACCGAAGTGCCA
* **
1341258 CATAGAATTTGCACCGAAGTGCGG
1 CATAGAAATTGCACCGAAGTGCCA
*
1341282 CGTAGAAA-TGCACCG
1 CATAGAAATTGCACCG
1341297 TAGTTCCATA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (24 bp):
CATAGAAATTGCACCGAAGTGCCA
Found at i:1347303 original size:18 final size:18
Alignment explanation
Indices: 1347280--1347340 Score: 88
Period size: 18 Copynumber: 3.3 Consensus size: 18
1347270 ATTAAATGAA
1347280 CATCGAATGCAGTGAGTG
1 CATCGAATGCAGTGAGTG
1347298 CATCGAATGCAGTGAGTG
1 CATCGAATGCAGTGAGTG
*
1347316 CATCG-ATGCGTAGGGAGTG
1 CATCGAATGC--AGTGAGTG
1347335 CATCGA
1 CATCGA
1347341 TACACCCCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
17 4 0.10
18 23 0.59
19 12 0.31
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.21
Consensus pattern (18 bp):
CATCGAATGCAGTGAGTG
Found at i:1354116 original size:22 final size:23
Alignment explanation
Indices: 1354080--1354140 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
1354070 TTGGCGCAAA
* *
1354080 GGGAATCGATACCCCCCCTGAAG
1 GGGAACCGATTCCCCCCCTGAAG
**
1354103 GGGAACC-ATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCCCTGAAG
1354125 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
1354141 TGTAGGGGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 19 0.58
23 14 0.42
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (23 bp):
GGGAACCGATTCCCCCCCTGAAG
Found at i:1354149 original size:21 final size:21
Alignment explanation
Indices: 1354093--1354160 Score: 84
Period size: 21 Copynumber: 3.2 Consensus size: 21
1354083 AATCGATACC
1354093 CCCCCTGAAGGGGAACC-ATT
1 CCCCCTGAAGGGGAACCGATT
1354113 CCCCCTTTGAAGGGGAACCGATT
1 CCCCC--TGAAGGGGAACCGATT
* * *
1354136 CCCCCTGTAGGGGAATCGATA
1 CCCCCTGAAGGGGAACCGATT
1354157 CCCC
1 CCCC
1354161 TGGAGGTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.12
21 17 0.40
22 12 0.29
23 8 0.19
ACGTcount: A:0.22, C:0.35, G:0.25, T:0.18
Consensus pattern (21 bp):
CCCCCTGAAGGGGAACCGATT
Found at i:1356056 original size:17 final size:16
Alignment explanation
Indices: 1356027--1356092 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
1356017 CATTTTGGAT
*
1356027 ATTTTGGAATGTTTGA
1 ATTTTGGATTGTTTGA
1356043 ATTTGTGGATTGTTTG-
1 ATTT-TGGATTGTTTGA
* *
1356059 ACTTTGAATTTGTTTGA
1 ATTTTGGA-TTGTTTGA
1356076 ATTTATGGA-TGTTTGA
1 ATTT-TGGATTGTTTGA
1356092 A
1 A
1356093 ATTATATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 3 0.07
16 22 0.54
17 13 0.32
18 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.24, T:0.52
Consensus pattern (16 bp):
ATTTTGGATTGTTTGA
Found at i:1356402 original size:42 final size:42
Alignment explanation
Indices: 1356345--1356429 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
1356335 AGGGGGATAA
*
1356345 ATGTTAAAGTGTTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
1 ATGTTAAAGTATTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
1356387 ATGTTAAAGTATTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
1 ATGTTAAAGTATTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
1356429 A
1 A
1356430 GTAATTTCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.00, G:0.39, T:0.26
Consensus pattern (42 bp):
ATGTTAAAGTATTTAAAGGGGAGAAGTGTTAGAGTAAGGGGG
Found at i:1356422 original size:25 final size:25
Alignment explanation
Indices: 1356337--1356422 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 25
1356327 TAACAAAAAG
* * *
1356337 GGGGATAAATGTTAAAGTGTTTAAA
1 GGGGAGAAGTGTTAAAGTATTTAAA
*
1356362 GGGGAGAAGTGTT--AG-A-GT-AA
1 GGGGAGAAGTGTTAAAGTATTTAAA
1356382 GGGG-G-A-TGTTAAAGTATTTAAA
1 GGGGAGAAGTGTTAAAGTATTTAAA
*
1356404 GGGGAGAAGTGTTAGAGTA
1 GGGGAGAAGTGTTAAAGTA
1356423 AGGGGGAGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 16
0.68 0.09 0.23
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 3 0.06
20 7 0.15
21 2 0.04
22 6 0.13
23 3 0.06
24 1 0.02
25 20 0.43
ACGTcount: A:0.36, C:0.00, G:0.37, T:0.27
Consensus pattern (25 bp):
GGGGAGAAGTGTTAAAGTATTTAAA
Found at i:1356430 original size:21 final size:20
Alignment explanation
Indices: 1356360--1356427 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 20
1356350 AAAGTGTTTA
1356360 AAGGGGAGAAGTGTTAGAGT
1 AAGGGGAGAAGTGTTAGAGT
*
1356380 AAGGGG-G-A-TGTTAAAGTATTT
1 AAGGGGAGAAGTGTT--AG-A-GT
1356401 AAAGGGGAGAAGTGTTAGAGT
1 -AAGGGGAGAAGTGTTAGAGT
1356422 AAGGGG
1 AAGGGG
1356428 GAGTAATTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
17 4 0.11
18 1 0.03
19 3 0.08
20 13 0.34
21 2 0.05
22 7 0.18
23 3 0.08
24 1 0.03
25 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.43, T:0.22
Consensus pattern (20 bp):
AAGGGGAGAAGTGTTAGAGT
Found at i:1360515 original size:18 final size:17
Alignment explanation
Indices: 1360494--1360527 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
1360484 ATTAATTATA
1360494 TTATATTTATAGATATTG
1 TTATATTTAT-GATATTG
1360512 TTATATTTATGATATT
1 TTATATTTATGATATT
1360528 ATGTAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (17 bp):
TTATATTTATGATATTG
Found at i:1364846 original size:101 final size:101
Alignment explanation
Indices: 1364726--1364912 Score: 277
Period size: 101 Copynumber: 1.9 Consensus size: 101
1364716 TATACCCAGA
* * * * * *
1364726 TTATAATATTATATGTATACAATAAAGCTTGAGTTGTCCCTTTAGAGAAATTTGTTAAACAACCC
1 TTATAATATTATATATATACAATAAAGCTTGAATTGTCCCTATAAAGAAATTGGTTAAACACCCC
1364791 -GACTTTATGGATAAGATTCAGTTAGCCTAATAAAAG
66 AG-CTTTATGGATAAGATTCAGTTAGCCTAATAAAAG
* * *
1364827 TTATTATATTATATATATACAATAAAGCTTGAATTGTCCCTATAAAGCAATTGGTTAAACGCCCC
1 TTATAATATTATATATATACAATAAAGCTTGAATTGTCCCTATAAAGAAATTGGTTAAACACCCC
1364892 AGCTTTATGGATAAGATTCAG
66 AGCTTTATGGATAAGATTCAG
1364913 CTAGTCTGAT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
101 75 0.99
102 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (101 bp):
TTATAATATTATATATATACAATAAAGCTTGAATTGTCCCTATAAAGAAATTGGTTAAACACCCC
AGCTTTATGGATAAGATTCAGTTAGCCTAATAAAAG
Found at i:1366052 original size:38 final size:38
Alignment explanation
Indices: 1366001--1366135 Score: 200
Period size: 38 Copynumber: 3.5 Consensus size: 38
1365991 ACTTGAAACA
*
1366001 TTGGGGCATTTTGAAGGCCCGTAACAGTATAAATAATG
1 TTGGGGCATTTTGAAGGCTCGTAACAGTATAAATAATG
* *
1366039 TTGGGGCATTTTGAAGGCTCGTACCAGTATAAATAATA
1 TTGGGGCATTTTGAAGGCTCGTAACAGTATAAATAATG
*
1366077 TTGGGGCATTTTGAATGCTCGT-ACTAGTATAAAATAATG
1 TTGGGGCATTTTGAAGGCTCGTAAC-AGTAT-AAATAATG
1366116 TTGGGGCATTATTGAAGGCT
1 TTGGGGCATT-TTGAAGGCT
1366136 TATTTTAGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 61 0.70
39 17 0.20
40 8 0.09
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (38 bp):
TTGGGGCATTTTGAAGGCTCGTAACAGTATAAATAATG
Found at i:1367823 original size:37 final size:37
Alignment explanation
Indices: 1367773--1367944 Score: 209
Period size: 37 Copynumber: 4.6 Consensus size: 37
1367763 GGTTCGATCT
* * **
1367773 GTGAAGTAAATCAACCTTAAGCCTTCATGGAAGAGTA
1 GTGAAGCAAATCAATCTTAAGCCTTCACAGAAGAGTA
* * *
1367810 GTGAAGCAAATCAATCTTAAGCCTTTACAAAAGATTA
1 GTGAAGCAAATCAATCTTAAGCCTTCACAGAAGAGTA
* * *
1367847 GTGAAGAAAATCAATTTTAAACCTTCACAGAAGAGTA
1 GTGAAGCAAATCAATCTTAAGCCTTCACAGAAGAGTA
* * *
1367884 GTCAAACAAATCAATCTTTAAGCCTTCACGGAAGAGTA
1 GTGAAGCAAATCAATC-TTAAGCCTTCACAGAAGAGTA
*
1367922 GTGAATCAAATCAATCTTAAGCC
1 GTGAAGCAAATCAATCTTAAGCC
1367945 AATCTTAAGC
Statistics
Matches: 113, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
37 80 0.71
38 33 0.29
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (37 bp):
GTGAAGCAAATCAATCTTAAGCCTTCACAGAAGAGTA
Found at i:1367967 original size:48 final size:49
Alignment explanation
Indices: 1367895--1367988 Score: 145
Period size: 48 Copynumber: 1.9 Consensus size: 49
1367885 TCAAACAAAT
* * * *
1367895 CAATCTTTAAGCCTTCACGGAAGAGTAGTGAATCAAATCAATCTTAAGC
1 CAATCTTTAAGCCTTCACGAAAGAGCAATGAATAAAATCAATCTTAAGC
1367944 CAATC-TTAAGCCTTCACGAAAGAGCAATGAATAAAATCAATCTTA
1 CAATCTTTAAGCCTTCACGAAAGAGCAATGAATAAAATCAATCTTA
1367989 GCCTTCATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 36 0.88
49 5 0.12
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (49 bp):
CAATCTTTAAGCCTTCACGAAAGAGCAATGAATAAAATCAATCTTAAGC
Found at i:1367995 original size:36 final size:37
Alignment explanation
Indices: 1367944--1368023 Score: 101
Period size: 36 Copynumber: 2.2 Consensus size: 37
1367934 AATCTTAAGC
1367944 CAATCTTAAGCCTTCACGAAAGAGCAATGAATA-AAAT
1 CAATCTTAAGCCTTCACGAAAGAGCAATGAA-ACAAAT
* * * *
1367981 CAATCTT-AGCCTTCATGGAAGAGTAGTGAAACAAAT
1 CAATCTTAAGCCTTCACGAAAGAGCAATGAAACAAAT
1368017 CAATCTT
1 CAATCTT
1368024 GAGTCCTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 1 0.03
36 30 0.79
37 7 0.18
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (37 bp):
CAATCTTAAGCCTTCACGAAAGAGCAATGAAACAAAT
Found at i:1368100 original size:55 final size:55
Alignment explanation
Indices: 1368025--1369590 Score: 1205
Period size: 55 Copynumber: 28.6 Consensus size: 55
1368015 ATCAATCTTG
* * * * *
1368025 AGTCCTATACTCCCTTAAAGAAGATGGAGCAGACCCATTTTATGAAGATCGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * ** * * *
1368080 AGTCATATACTCCTTGAAAGAAGAATGAGCAGACACATTTGCTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
** * * * * * *
1368135 AGTATTATAATCCCTGAAATAAGAGGGAACGGACCCGTTTAC-CAATGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAA-GATTGTTCA
* * * * *
1368190 AGTCCTATACTCCTTGAAATAAGAAGGATCAGA--CATGTTTGCTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCAT-TTT-CTGAAGATTGTTCA
* * *
1368245 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCGTTTGCTGAATATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * ** * * *
1368300 AGTCCTATACTCCTTGAAAGAAGAAGGATCAAACACGTTTGCTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * *
1368355 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCGTTTGCCGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * * * *
1368410 AGTCTTATACTCCTTGAAAGAAAAAGGAGCGGACAGC-GTTGCTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGAC-CCATTTTCTGAAGATTGTTCA
* * ** *
1368465 AGTCCTATACTCCCTGAAATAAAAGGGAGCATACCCATTTTTTGAAGATTGTTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTG-TTCA
* *
1368521 AGTCCTATACTCCCTGAAAGAAGAGGGAGC-GAACCATTTTTTGAAGATTGTTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTG-TTCA
* * * * *
1368576 AGTCCTATACTCCCTGAAATAAGAGGGAGCAGACTCATTTGTC-AAAGATTGTGTGA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTT-TCTGAAGATTGT-TCA
* *
1368632 AGTCCTATACT-CCTGAAAGAAGAGGGAGTGGA-CCAGTTTTTTGAAGATTGTTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCA-TTTTCTGAAGATTG-TTCA
* * * * * *
1368687 AGTCCTATACTCCCT----G-A-A---A---TACTCGTGTGTC-AAAGATTGTGTGA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCAT-TTTCTGAAGATTGT-TCA
* * * * * * *
1368731 AGTCCTATACT-CCTAAAACAAGAGGGAGTGGACCCGTTTACCGAAGATTGTTTTA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTG-TTCA
* * * *
1368786 AGTCCTATAATCCCTGAAAGAAGAGGGAGCAGACCTATTTT-TCGAAGATTATTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCT-GAAGATT-GTTCA
* * * * * * *
1368842 AGTCCTATACTCCGTAAAAAAAGAGTGAGCGGACCCGTTTT-TCAAAGATTATTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCT-GAAGATT-GTTCA
* * * * * *
1368898 AATCCTATACTCCTTGAAATAAGAGGGAGCAGAACCATTTTCTGAAGATTGTTCG
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
** * ** * * * * *
1368953 AGTCCTATACTTTCTTAAAGAAGAGGGAGTAGACCCGTCTTCCGAAAATTATTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * * * ** *
1369008 AGTCTTATAATTCCTGAAAAAATAGGGGGAAGACTCATTTT-TCGAAGATTGTTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCT-GAAGATTG-TTCA
* ** * * **
1369064 ATTCCTATACTCTTTGAAAG-A-A-GGAGCGGACCTATTATCCAAAGATAT-TTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGAT-TGTTCA
* * ** *
1369116 AGTCATATACTCCCTGAAAGAAGATGGAGCGGACTTATTTTCTGAAGTTTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * * * **
1369171 AGTCCTAAAATCCCTTAAAGAAGAGCGAGCGAACCTATTTTCCAAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * ** *
1369226 AGTCCTATACTCCCTGAATGAAGAGAGAGCGGGCCTATTTTCCAAATATTTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGA-TTGTTCA
** *** *
1369282 AGTCCTATACTCCCTGAAAGAAGATGGG-GCATACTTGTTTTTTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGA-GGGAGCGGACCCATTTTCTGAAGATTGTTCA
* ** * * *
1369337 AGTCCTATACTCCCTTAAAGAATTGGGAGCGGTCTCGTTTTCTGAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * *
1369392 AGTCCTGTACTCCCTGAAAGAAGATGGAGCGGATCTATTTTCTGAAAATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * *
1369447 AGTCCTATACTCCCTGAAAGAAGAGGGAGGGGACCCGTTTT-TCAAAGATTGTTCA
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCT-GAAGATTGTTCA
* * * * *
1369502 AGTCTTATACTCCCTGAGAGAAGAGGGAGTGGACCCATTTTTTGAAGATTGTTCG
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
* * * * **
1369557 AGTCATATGCTTCTTGAAAGAAGAATGAGCGGAC
1 AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGAC
1369591 TCATCTATTA
Statistics
Matches: 1205, Mismatches: 256, Indels: 100
0.77 0.16 0.06
Matches are distributed among these distances:
43 4 0.00
44 22 0.02
45 3 0.00
47 1 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 22 0.02
53 18 0.01
54 18 0.01
55 861 0.71
56 246 0.20
57 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (55 bp):
AGTCCTATACTCCCTGAAAGAAGAGGGAGCGGACCCATTTTCTGAAGATTGTTCA
Found at i:1368789 original size:99 final size:99
Alignment explanation
Indices: 1368615--1368804 Score: 308
Period size: 99 Copynumber: 1.9 Consensus size: 99
1368605 CAGACTCATT
* * ***
1368615 TGTCAAAGATTGTGTGAAGTCCTATACTCCTGAAAGAAGAGGGAGTGGACCAGTTTTTTGAAGAT
1 TGTCAAAGATTGTGTGAAGTCCTATACTCCTAAAACAAGAGGGAGTGGACCAGTTTACCGAAGAT
*
1368680 TGTTTCAAGTCCTATACTCCCTGAAATACTCGTG
66 TGTTTCAAGTCCTATAATCCCTGAAATACTCGTG
*
1368714 TGTCAAAGATTGTGTGAAGTCCTATACTCCTAAAACAAGAGGGAGTGGACCCGTTTACCGAAGAT
1 TGTCAAAGATTGTGTGAAGTCCTATACTCCTAAAACAAGAGGGAGTGGACCAGTTTACCGAAGAT
*
1368779 TGTTTTAAGTCCTATAATCCCTGAAA
66 TGTTTCAAGTCCTATAATCCCTGAAA
1368805 GAAGAGGGAG
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (99 bp):
TGTCAAAGATTGTGTGAAGTCCTATACTCCTAAAACAAGAGGGAGTGGACCAGTTTACCGAAGAT
TGTTTCAAGTCCTATAATCCCTGAAATACTCGTG
Found at i:1368846 original size:155 final size:155
Alignment explanation
Indices: 1368564--1368854 Score: 388
Period size: 155 Copynumber: 1.9 Consensus size: 155
1368554 CCATTTTTTG
* * * * **
1368564 AAGATTGTTTCAAGTCCTATACTCCCTGAAATAAGAGGGAGCAGACTCATTTGTCAAAGATTGTG
1 AAGATTGTGTCAAGTCCTATACTCCCTAAAACAAGAGGGAGCAGACCCATTTACCAAAGATTGTG
* ** * *
1368629 TGAAGTCCTATACTCCTGAAAGAAGAGGGAGTGGACCAGTTTTTTGAAGATTGTTTCAAGTCCTA
66 TGAAGTCCTATAATCCTGAAAGAAGAGGGAGCAGACCAGTTTTTCGAAGATTATTTCAAGTCCTA
1368694 TACTCCCTGAAATACTCGTGTGTCA
131 TACTCCCTGAAATACTCGTGTGTCA
* ** * * *
1368719 AAGATTGTGTGAAGTCCTATACT-CCTAAAACAAGAGGGAGTGGACCCGTTTACCGAAGATTGTT
1 AAGATTGTGTCAAGTCCTATACTCCCTAAAACAAGAGGGAGCAGACCCATTTACCAAAGATTGTG
*
1368783 TTAAGTCCTATAATCCCTGAAAGAAGAGGGAGCAGACCTA-TTTTTCGAAGATTATTTCAAGTCC
66 TGAAGTCCTATAAT-CCTGAAAGAAGAGGGAGCAGACC-AGTTTTTCGAAGATTATTTCAAGTCC
1368847 TATACTCC
129 TATACTCC
1368855 GTAAAAAAAG
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
154 43 0.37
155 72 0.62
156 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (155 bp):
AAGATTGTGTCAAGTCCTATACTCCCTAAAACAAGAGGGAGCAGACCCATTTACCAAAGATTGTG
TGAAGTCCTATAATCCTGAAAGAAGAGGGAGCAGACCAGTTTTTCGAAGATTATTTCAAGTCCTA
TACTCCCTGAAATACTCGTGTGTCA
Found at i:1369228 original size:218 final size:223
Alignment explanation
Indices: 1368774--1369514 Score: 517
Period size: 221 Copynumber: 3.4 Consensus size: 223
1368764 CCGTTTACCG
* * *
1368774 AAGATTGTTTTAAGTCCTATAATCCCTGAAAGAAGAGGGAGCAGACCTATTTTTCGAAGATTATT
1 AAGATTG-TTCAAGTCCTATAATCCCTGAAAAAAGAGGGAGAAGACCTATTTTTCGAAGATTATT
* * * *
1368839 TCAAGTCCTATACTCCGTAAAAAAAGAGTGAGCGGACCCGTTTTTCAAAGATTATTTCAAATCCT
65 TCAAGTCCTATACTCCGTAAAAAAAGAGTGAGCGGACCCATTATCCAAAGATTATTTCAAATCAT
* * * * * **
1368904 ATACTCCTTGAAATAAGAGGGAGCAGAACCATTTTCTGAAGATTGTTCGAGTCCTATACTTTCTT
130 ATACTCCCTGAAAGAAGAGGGAGCAGAACCATTTTCTGAAGATTGTTCAAGTCCTAAAATCCCTT
* * *
1368969 AAAGAAGAGGGAGTAGACCCGTCTTCCGA
195 AAAGAAGAGCGAGGAGACCCATCTTCCGA
* * * * * *
1368998 AA-ATTATTCAAGTCTTATAATTCCTGAAAAAATAGGGGGAAGA-CTCATTTTTCGAAGATTGTT
1 AAGATTGTTCAAGTCCTATAATCCCTGAAAAAAGAGGGAGAAGACCT-ATTTTTCGAAGATTATT
* * ** * * *
1369061 TCAATTCCTATACT-CTTTGAAAGA-AG-GAGCGGACCTATTATCCAAAGA-TATTTCAAGTCAT
65 TCAAGTCCTATACTCCGTAAAAAAAGAGTGAGCGGACCCATTATCCAAAGATTATTTCAAATCAT
* * * *
1369122 ATACTCCCTGAAAGAAGATGGAGC-GGACTTATTTTCTGAAGTTTGTTCAAGTCCTAAAATCCCT
130 ATACTCCCTGAAAGAAGAGGGAGCAGAAC-CATTTTCTGAAGATTGTTCAAGTCCTAAAATCCCT
* *
1369186 TAAAGAAGAGCGAGCGA-ACCTATTTTCC-A
194 TAAAGAAGAGCGAG-GAGACCCATCTTCCGA
* ** * ** * * * *
1369215 AAGATTGTTCAAGTCCTATACTCCCTGAATGAAGAGAGAGCGGGCCTATTTTCCAAATATT-TGT
1 AAGATTGTTCAAGTCCTATAATCCCTGAAAAAAGAGGGAGAAGACCTATTTTTCGAAGATTAT-T
* * * * ** *** * *** * * *
1369279 TCAAGTCCTATACTCCCTGAAAGAAGA-TGGGGCATACTTGTTTTTTGAAGATT-GTTCAAGTCC
65 TCAAGTCCTATACTCCGTAAAAAAAGAGT-GAGCGGACCCATTATCCAAAGATTATTTCAAATCA
* ** ** * ** *
1369342 TATACTCCCTTAAAGAATTGGGAGC-GGTCTCGTTTTCTGAAGATTGTTCAAGTCCTGTACTCCC
129 TATACTCCCTGAAAGAAGAGGGAGCAGAAC-CATTTTCTGAAGATTGTTCAAGTCCTAAAATCCC
* * * * *
1369406 TGAAAGAAGATG-GAGCG-GATCTATTTTCTGA
193 TTAAAGAAGA-GCGAG-GAGACCCATCTTCCGA
* * ** ** * *
1369437 AA-ATTGTTCAAGTCCTATACTCCCTGAAAGAAGAGGGAGGGGACCCGTTTTTCAAAGATT-GTT
1 AAGATTGTTCAAGTCCTATAATCCCTGAAAAAAGAGGGAGAAGACCTATTTTTCGAAGATTATTT
*
1369500 CAAGTCTTATACTCC
66 CAAGTCCTATACTCC
1369515 CTGAGAGAAG
Statistics
Matches: 411, Mismatches: 92, Indels: 32
0.77 0.17 0.06
Matches are distributed among these distances:
217 7 0.02
218 135 0.33
219 26 0.06
220 19 0.05
221 155 0.38
222 64 0.16
223 3 0.01
224 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (223 bp):
AAGATTGTTCAAGTCCTATAATCCCTGAAAAAAGAGGGAGAAGACCTATTTTTCGAAGATTATTT
CAAGTCCTATACTCCGTAAAAAAAGAGTGAGCGGACCCATTATCCAAAGATTATTTCAAATCATA
TACTCCCTGAAAGAAGAGGGAGCAGAACCATTTTCTGAAGATTGTTCAAGTCCTAAAATCCCTTA
AAGAAGAGCGAGGAGACCCATCTTCCGA
Found at i:1369801 original size:15 final size:14
Alignment explanation
Indices: 1369781--1369823 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
1369771 TTTTTTTGGG
1369781 TTTATATTAATATTA
1 TTTATATT-ATATTA
1369796 TTTATATTATATT-
1 TTTATATTATATTA
* *
1369809 TATATATGATATTA
1 TTTATATTATATTA
1369823 T
1 T
1369824 GTAATCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTATATTATATTA
Found at i:1370620 original size:24 final size:24
Alignment explanation
Indices: 1370588--1370634 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1370578 AAAAAGAGTG
*
1370588 AAAAGCCTATAAACTATCAACCAA
1 AAAACCCTATAAACTATCAACCAA
* *
1370612 AAAACCCTATTAGCTATCAACCA
1 AAAACCCTATAAACTATCAACCA
1370635 TTAGAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.28, G:0.04, T:0.19
Consensus pattern (24 bp):
AAAACCCTATAAACTATCAACCAA
Found at i:1383501 original size:18 final size:18
Alignment explanation
Indices: 1383480--1383518 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1383470 CTTTAACCTT
1383480 ACAACACTTACCACAACA
1 ACAACACTTACCACAACA
* * *
1383498 ACAACATTTGCCACGACA
1 ACAACACTTACCACAACA
1383516 ACA
1 ACA
1383519 CCATTCATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.36, G:0.05, T:0.13
Consensus pattern (18 bp):
ACAACACTTACCACAACA
Found at i:1383852 original size:23 final size:21
Alignment explanation
Indices: 1383824--1383875 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
1383814 CCGGGTTAGT
*
1383824 AAAAAAATCAAAAAAAATAAAA
1 AAAAAAAT-AAAAAAAAGAAAA
*
1383846 AACAAAAATAAAAAAAAGAAAG
1 AA-AAAAATAAAAAAAAGAAAA
1383868 AAAAAAAT
1 AAAAAAAT
1383876 TTTAAAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 6 0.22
22 15 0.56
23 6 0.22
ACGTcount: A:0.85, C:0.04, G:0.04, T:0.08
Consensus pattern (21 bp):
AAAAAAATAAAAAAAAGAAAA
Found at i:1383859 original size:14 final size:13
Alignment explanation
Indices: 1383833--1383874 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
1383823 TAAAAAAATC
1383833 AAAAAAAATAAAA
1 AAAAAAAATAAAA
*
1383846 AACAAAAATAAAA
1 AAAAAAAATAAAA
* *
1383859 AAAAGAAAGAAAA
1 AAAAAAAATAAAA
1383872 AAA
1 AAA
1383875 TTTTAAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.88, C:0.02, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAAAAAATAAAA
Found at i:1394683 original size:92 final size:92
Alignment explanation
Indices: 1394526--1394709 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
1394516 CAAGATTGAA
1394526 CCTTTTATAAATTTTAACGATCTTTTCTCGAAGAATTTAATAGACGAACATTTCTTTTTCTCTCG
1 CCTTTTATAAATTTTAACGATCTTTTCTCGAAGAATTTAATAGACGAACATTTCTTTTTCTCTCG
1394591 TTCTCAAATTTTAGGTGTGGTCAAATT
66 TTCTCAAATTTTAGGTGTGGTCAAATT
1394618 CCTTTTATAAATTTTAACGATCTTTTCTCGAAGAATTTAATAGACGAACATTTCTTTTTCTCTCG
1 CCTTTTATAAATTTTAACGATCTTTTCTCGAAGAATTTAATAGACGAACATTTCTTTTTCTCTCG
1394683 TTCTCAAATTTTAGGTGTGGTCAAATT
66 TTCTCAAATTTTAGGTGTGGTCAAATT
1394710 TAGGGTTTCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (92 bp):
CCTTTTATAAATTTTAACGATCTTTTCTCGAAGAATTTAATAGACGAACATTTCTTTTTCTCTCG
TTCTCAAATTTTAGGTGTGGTCAAATT
Found at i:1396601 original size:19 final size:19
Alignment explanation
Indices: 1396563--1396603 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1396553 ATAATATACG
**
1396563 ATATATTTTTTTAAACTAT
1 ATATATTTTTAAAAACTAT
*
1396582 ATATATTTTTAAAAATTAT
1 ATATATTTTTAAAAACTAT
1396601 ATA
1 ATA
1396604 ATATATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
ATATATTTTTAAAAACTAT
Found at i:1396678 original size:17 final size:16
Alignment explanation
Indices: 1396656--1396690 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
1396646 TATATTAAAC
1396656 ATGTTTTTAAAAACTAT
1 ATGTTTTTAAAAA-TAT
1396673 ATGTTTTTAAAAATAT
1 ATGTTTTTAAAAATAT
1396689 AT
1 AT
1396691 AATAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (16 bp):
ATGTTTTTAAAAATAT
Found at i:1396684 original size:16 final size:17
Alignment explanation
Indices: 1396656--1396690 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
1396646 TATATTAAAC
*
1396656 ATGTTTTTAAAAACTAT
1 ATGTTTTTAAAAAATAT
1396673 ATGTTTTT-AAAAATAT
1 ATGTTTTTAAAAAATAT
1396689 AT
1 AT
1396691 AATAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (17 bp):
ATGTTTTTAAAAAATAT
Found at i:1397951 original size:24 final size:24
Alignment explanation
Indices: 1397923--1397979 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
1397913 TAACGTCTTG
1397923 TGATTCTTGTCAATCTTAATTTTC
1 TGATTCTTGTCAATCTTAATTTTC
1397947 TGATTCTTGTCAATCTTAATTTTC
1 TGATTCTTGTCAATCTTAATTTTC
1397971 TGATTCTTG
1 TGATTCTTG
1397980 ATTCTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54
Consensus pattern (24 bp):
TGATTCTTGTCAATCTTAATTTTC
Found at i:1398771 original size:14 final size:14
Alignment explanation
Indices: 1398748--1398780 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1398738 TTTTCTTCTA
*
1398748 TTTAGGATTTAAGG
1 TTTAGAATTTAAGG
1398762 TTTAGAATTTAAGG
1 TTTAGAATTTAAGG
1398776 TTTAG
1 TTTAG
1398781 GAAAGTGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (14 bp):
TTTAGAATTTAAGG
Found at i:1402830 original size:14 final size:14
Alignment explanation
Indices: 1402811--1402841 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1402801 TGAAAGAAAA
1402811 ATAGGGGAAAATAT
1 ATAGGGGAAAATAT
*
1402825 ATAGGGGAATATAT
1 ATAGGGGAAAATAT
1402839 ATA
1 ATA
1402842 TATATATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (14 bp):
ATAGGGGAAAATAT
Found at i:1411040 original size:34 final size:37
Alignment explanation
Indices: 1410974--1411044 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 37
1410964 TCCCCTTTAT
1410974 TCTTATTTTTTTTCTTATTTTCTCATATTTTTCTTTC
1 TCTTATTTTTTTTCTTATTTTCTCATATTTTTCTTTC
1411011 TCTT-TTTTTTTT-TT-TTTTGCTCATA-TTTTCTTTC
1 TCTTATTTTTTTTCTTATTTT-CTCATATTTTTCTTTC
1411045 CTGTTTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
34 13 0.39
35 8 0.24
36 8 0.24
37 4 0.12
ACGTcount: A:0.08, C:0.15, G:0.01, T:0.75
Consensus pattern (37 bp):
TCTTATTTTTTTTCTTATTTTCTCATATTTTTCTTTC
Found at i:1413152 original size:25 final size:26
Alignment explanation
Indices: 1413114--1413176 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 26
1413104 TGCTTGTTTA
*
1413114 TATATTTAATTTGTTTATATTCATAAG
1 TATATTT-ATTTGTTTATATACATAAG
1413141 T-TATTTATTTGTTTATATACATAAG
1 TATATTTATTTGTTTATATACATAAG
*
1413166 TAAATTTATTT
1 TATATTTATTT
1413177 ATAAAATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 19 0.58
26 13 0.39
27 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.57
Consensus pattern (26 bp):
TATATTTATTTGTTTATATACATAAG
Found at i:1413631 original size:16 final size:17
Alignment explanation
Indices: 1413600--1413633 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1413590 GCCACGTAGT
1413600 CACCGGTAATTCTCTTC
1 CACCGGTAATTCTCTTC
*
1413617 CACCGG-AATTTTCTTC
1 CACCGGTAATTCTCTTC
1413633 C
1 C
1413634 GACGAGGCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.18, C:0.35, G:0.12, T:0.35
Consensus pattern (17 bp):
CACCGGTAATTCTCTTC
Found at i:1417472 original size:31 final size:31
Alignment explanation
Indices: 1417399--1417465 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
1417389 CAAACAGTCA
1417399 GGGACCATATTGCAAACAGACTAAATGTTGG
1 GGGACCATATTGCAAACAGACTAAATGTTGG
**
1417430 GGGACCATATTGCAAATGGACTAAATGTTGG
1 GGGACCATATTGCAAACAGACTAAATGTTGG
1417461 GGGAC
1 GGGAC
1417466 TGTATTGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (31 bp):
GGGACCATATTGCAAACAGACTAAATGTTGG
Found at i:1420603 original size:63 final size:62
Alignment explanation
Indices: 1420424--1420606 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
1420414 AAAACTTAAT
* * *
1420424 GTTAAATTTTGAAC--GAGA-T-AAATGAAACAAAAATTAAACTTTATGTATGGTTTTGAAA
1 GTTAAATTTTGAACAAGATACTAAAATGAAACAAAAACTAAACTTTAAGTATGGTTTTGAAA
**
1420482 GTTAAATTTTGAACGGGATACTAAAATGAAACAAAAACTAAACTTTAAGTATGGTTTTGAAA
1 GTTAAATTTTGAACAAGATACTAAAATGAAACAAAAACTAAACTTTAAGTATGGTTTTGAAA
* * * *
1420544 GTTAAATTTTGAACAAGATACTAAAAATGAAGCAAAAACTAAATTTTAGGTATGATTTTGAAA
1 GTTAAATTTTGAACAAGATACT-AAAATGAAACAAAAACTAAACTTTAAGTATGGTTTTGAAA
1420607 AATTGAGATT
Statistics
Matches: 111, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
58 14 0.13
60 3 0.03
61 1 0.01
62 57 0.51
63 36 0.32
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.32
Consensus pattern (62 bp):
GTTAAATTTTGAACAAGATACTAAAATGAAACAAAAACTAAACTTTAAGTATGGTTTTGAAA
Found at i:1421053 original size:15 final size:15
Alignment explanation
Indices: 1421033--1421064 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1421023 ATCGGGTGGA
*
1421033 GGATGTAAAATTTTC
1 GGATGTAAAAGTTTC
1421048 GGATGTAAAAGTTTC
1 GGATGTAAAAGTTTC
1421063 GG
1 GG
1421065 GTCAAGTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (15 bp):
GGATGTAAAAGTTTC
Found at i:1426006 original size:28 final size:28
Alignment explanation
Indices: 1425966--1426022 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
1425956 TGTTGTCTTA
1425966 ATCGAATTAATCAATTGAATTGAAATTT
1 ATCGAATTAATCAATTGAATTGAAATTT
1425994 ATCGAATTAATCAATTGAATTGAAATTT
1 ATCGAATTAATCAATTGAATTGAAATTT
1426022 A
1 A
1426023 ATTCGATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.39
Consensus pattern (28 bp):
ATCGAATTAATCAATTGAATTGAAATTT
Found at i:1426920 original size:34 final size:34
Alignment explanation
Indices: 1426877--1426961 Score: 152
Period size: 34 Copynumber: 2.5 Consensus size: 34
1426867 TATGATTGAT
1426877 CTCTCGGCGTCTTCAGTTGGATTCTTCATAGGAA
1 CTCTCGGCGTCTTCAGTTGGATTCTTCATAGGAA
*
1426911 CTCTCGGCGTCTTCAGTTGGATTCTTCGTAGGAA
1 CTCTCGGCGTCTTCAGTTGGATTCTTCATAGGAA
*
1426945 ATCTCGGCGTCTTCAGT
1 CTCTCGGCGTCTTCAGT
1426962 GCTGTGCATG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (34 bp):
CTCTCGGCGTCTTCAGTTGGATTCTTCATAGGAA
Found at i:1427015 original size:22 final size:22
Alignment explanation
Indices: 1426990--1427046 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
1426980 CGTGAGAAAT
1426990 CACGGGTTCTGCAAGGAGAGAG
1 CACGGGTTCTGCAAGGAGAGAG
1427012 CACGGGTTCTGCAAGGAGAGAG
1 CACGGGTTCTGCAAGGAGAGAG
*
1427034 CACGGGTCCTGCA
1 CACGGGTTCTGCA
1427047 GGGCTGCACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.39, T:0.14
Consensus pattern (22 bp):
CACGGGTTCTGCAAGGAGAGAG
Found at i:1427080 original size:23 final size:23
Alignment explanation
Indices: 1427050--1427093 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
1427040 TCCTGCAGGG
1427050 CTGCACGTCTGCATGTGGGGGTC
1 CTGCACGTCTGCATGTGGGGGTC
1427073 CTGCACGTCTGCATGTGGGGG
1 CTGCACGTCTGCATGTGGGGG
1427094 GCATGCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.25, G:0.41, T:0.25
Consensus pattern (23 bp):
CTGCACGTCTGCATGTGGGGGTC
Found at i:1427100 original size:23 final size:22
Alignment explanation
Indices: 1427047--1427100 Score: 81
Period size: 23 Copynumber: 2.4 Consensus size: 22
1427037 GGGTCCTGCA
1427047 GGGCTGCACGTCTGCATGTGGG
1 GGGCTGCACGTCTGCATGTGGG
*
1427069 GGTCCTGCACGTCTGCATGTGGG
1 GG-GCTGCACGTCTGCATGTGGG
1427092 GGGCATGCA
1 GGGC-TGCA
1427101 ACTGTTGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 3 0.11
23 25 0.89
ACGTcount: A:0.11, C:0.24, G:0.43, T:0.22
Consensus pattern (22 bp):
GGGCTGCACGTCTGCATGTGGG
Found at i:1427838 original size:172 final size:173
Alignment explanation
Indices: 1427551--1427909 Score: 560
Period size: 172 Copynumber: 2.1 Consensus size: 173
1427541 TTGTAAAGTT
* * * *
1427551 TTAGGGACCGTTTTGTAAAATTTAAGGAATTTAAGGAATAAGAGTAAATTATTAAAAGTTGCTAT
1 TTAGGGATCGTTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
*
1427616 ACTATGCTGGAATTTAGTATTAGTATGCTTAATTGGTTAAATTAGAAAGAATTTA-AAATTTA-T
66 ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
* *
1427679 GGATTAAATTGCTAACTTTGAAAATGTTGAGAACCAAATAGTAA
131 -GATTAAATTACAAACTTTGAAAATGTTGAGAACCAAATAGTAA
* * *
1427723 TTAGGGATCGTTTTGCAAAATTTGAGGAATTTAAGAAATTAGAGTAAATTATAAAAAGTTGGTAT
1 TTAGGGATCGTTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
* *
1427788 ACTATGCTTGAATTTAGTATTAATATGCTTAATTGGTTAAATTTGAAAGAATTTATAAATTTAGT
66 ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
* *
1427853 GATTAAATTACAAAGTTTGAAAATGTTGAGAAGCAAATAGTAA
131 GATTAAATTACAAACTTTGAAAATGTTGAGAACCAAATAGTAA
*
1427896 TTAGGGATCATTTT
1 TTAGGGATCGTTTT
1427910 ATATTTGATG
Statistics
Matches: 170, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
172 110 0.65
173 59 0.35
174 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (173 bp):
TTAGGGATCGTTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
GATTAAATTACAAACTTTGAAAATGTTGAGAACCAAATAGTAA
Found at i:1429645 original size:6 final size:6
Alignment explanation
Indices: 1429634--1429664 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
1429624 CAAGAAGGAC
1429634 TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG T
1 TGGGAG TGGGAG TGGGAG TGGGAG TGGGAG T
1429665 TCTTCTCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.65, T:0.19
Consensus pattern (6 bp):
TGGGAG
Found at i:1430167 original size:42 final size:42
Alignment explanation
Indices: 1430118--1430256 Score: 173
Period size: 42 Copynumber: 3.4 Consensus size: 42
1430108 ATATATTTAC
* *
1430118 TATTATTATATCAGT-AAATATAAATCATTAAAGTCAAGTAAT
1 TATTATTAAATCATTAAAAT-TAAATCATTAAAGTCAAGTAAT
* * *
1430160 TATTATTAGATCATTAAAATTAAATCATTAAAATTAAGTAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTCAAGTAAT
*
1430202 TATTATTAAATTATTAAAATTAAATCATT--A---AAGTAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTCAAGTAAT
1430239 TATTATTAAATCATTAAA
1 TATTATTAAATCATTAAA
1430257 TCATTAAAGT
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
37 24 0.27
40 1 0.01
42 60 0.67
43 4 0.04
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (42 bp):
TATTATTAAATCATTAAAATTAAATCATTAAAGTCAAGTAAT
Found at i:1430175 original size:14 final size:14
Alignment explanation
Indices: 1430164--1430606 Score: 222
Period size: 14 Copynumber: 32.5 Consensus size: 14
1430154 AGTAATTATT
*
1430164 ATTAGATCATTAAA
1 ATTAAATCATTAAA
1430178 ATTAAATCATTAAA
1 ATTAAATCATTAAA
* * **
1430192 ATTAAGTAATTATT
1 ATTAAATCATTAAA
*
1430206 ATTAAATTATTAAA
1 ATTAAATCATTAAA
1430220 ATTAAATCATT-AA
1 ATTAAATCATTAAA
* *
1430233 AGT-AATTATT---
1 ATTAAATCATTAAA
1430243 ATTAAATCATTAAA
1 ATTAAATCATTAAA
* **
1430257 TCATTAAAGTAATTATT
1 --ATTAAA-TCATTAAA
*
1430274 ATTAAAGCATTAAA
1 ATTAAATCATTAAA
*
1430288 GTTAAATCATT-AA
1 ATTAAATCATTAAA
* *
1430301 AGT-AATTATT---
1 ATTAAATCATTAAA
1430311 ATTAAATCATTAAA
1 ATTAAATCATTAAA
1430325 TCATTAAATCATTAAA
1 --ATTAAATCATTAAA
*
1430341 A-TAATTATTATTAAA
1 ATTAA--ATCATTAAA
1430356 TCATTAAATCATTAAA
1 --ATTAAATCATTAAA
* **
1430372 TCATTAAAGTAATTATT
1 --ATTAAA-TCATTAAA
1430389 ATTAAATCATTAAA
1 ATTAAATCATTAAA
*
1430403 GTTAAATCATTAAA
1 ATTAAATCATTAAA
*
1430417 TCATTAAA--GTTAAA
1 --ATTAAATCATTAAA
1430431 TCATTAAATCATTAAA
1 --ATTAAATCATTAAA
1430447 ATTAAATCATT-AA
1 ATTAAATCATTAAA
* *
1430460 AGT-AATTATT---
1 ATTAAATCATTAAA
*
1430470 ATTAAATCACTAAA
1 ATTAAATCATTAAA
1430484 ATTAAATCATT-AA
1 ATTAAATCATTAAA
* *
1430497 AGT-AATTATT---
1 ATTAAATCATTAAA
1430507 ATTAAATCATTAAA
1 ATTAAATCATTAAA
*
1430521 GTTAAATCATT-AA
1 ATTAAATCATTAAA
* *
1430534 AGT-AATTATT---
1 ATTAAATCATTAAA
1430544 ATTAAATCATTAAA
1 ATTAAATCATTAAA
* * **
1430558 GTTAAATAATTATT
1 ATTAAATCATTAAA
1430572 ATTAAATCATTAAA
1 ATTAAATCATTAAA
* *
1430586 GTTAAATAATTAAA
1 ATTAAATCATTAAA
*
1430600 TTTAAAT
1 ATTAAAT
1430607 AATAATTATT
Statistics
Matches: 327, Mismatches: 67, Indels: 70
0.70 0.14 0.15
Matches are distributed among these distances:
10 10 0.03
11 29 0.09
12 30 0.09
13 21 0.06
14 157 0.48
15 20 0.06
16 46 0.14
17 11 0.03
18 3 0.01
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (14 bp):
ATTAAATCATTAAA
Found at i:1430189 original size:8 final size:8
Alignment explanation
Indices: 1430164--1430585 Score: 222
Period size: 8 Copynumber: 56.8 Consensus size: 8
1430154 AGTAATTATT
*
1430164 ATTAGATC
1 ATTAAATC
1430172 ATTAAA--
1 ATTAAATC
1430178 ATTAAATC
1 ATTAAATC
1430186 ATTAAA--
1 ATTAAATC
* *
1430192 ATTAAGTA
1 ATTAAATC
*
1430200 ATT--ATT
1 ATTAAATC
*
1430206 ATTAAATT
1 ATTAAATC
1430214 ATTAAA--
1 ATTAAATC
1430220 ATTAAATC
1 ATTAAATC
*
1430228 ATTAAAGTA
1 ATTAAA-TC
*
1430237 ATT--ATT
1 ATTAAATC
1430243 ATTAAATC
1 ATTAAATC
1430251 ATTAAATC
1 ATTAAATC
*
1430259 ATTAAAGTA
1 ATTAAA-TC
*
1430268 ATT--ATT
1 ATTAAATC
*
1430274 ATTAAAGC
1 ATTAAATC
1430282 ATTAAA--
1 ATTAAATC
*
1430288 GTTAAATC
1 ATTAAATC
*
1430296 ATTAAAGTA
1 ATTAAA-TC
*
1430305 ATT--ATT
1 ATTAAATC
1430311 ATTAAATC
1 ATTAAATC
1430319 ATTAAATC
1 ATTAAATC
1430327 ATTAAATC
1 ATTAAATC
*
1430335 ATTAAAATA
1 ATT-AAATC
*
1430344 ATT--ATT
1 ATTAAATC
1430350 ATTAAATC
1 ATTAAATC
1430358 ATTAAATC
1 ATTAAATC
1430366 ATTAAATC
1 ATTAAATC
*
1430374 ATTAAAGTA
1 ATTAAA-TC
*
1430383 ATT--ATT
1 ATTAAATC
1430389 ATTAAATC
1 ATTAAATC
1430397 ATTAAA--
1 ATTAAATC
*
1430403 GTTAAATC
1 ATTAAATC
1430411 ATTAAATC
1 ATTAAATC
1430419 ATTAAA--
1 ATTAAATC
*
1430425 GTTAAATC
1 ATTAAATC
1430433 ATTAAATC
1 ATTAAATC
1430441 ATTAAA--
1 ATTAAATC
1430447 ATTAAATC
1 ATTAAATC
*
1430455 ATTAAAGTA
1 ATTAAA-TC
*
1430464 ATT--ATT
1 ATTAAATC
1430470 ATTAAATC
1 ATTAAATC
*
1430478 ACTAAA--
1 ATTAAATC
1430484 ATTAAATC
1 ATTAAATC
*
1430492 ATTAAAGTA
1 ATTAAA-TC
*
1430501 ATT--ATT
1 ATTAAATC
1430507 ATTAAATC
1 ATTAAATC
1430515 ATTAAA--
1 ATTAAATC
*
1430521 GTTAAATC
1 ATTAAATC
*
1430529 ATTAAAGTA
1 ATTAAA-TC
*
1430538 ATT--ATT
1 ATTAAATC
1430544 ATTAAATC
1 ATTAAATC
1430552 ATTAAA--
1 ATTAAATC
* *
1430558 GTTAAATA
1 ATTAAATC
*
1430566 ATT--ATT
1 ATTAAATC
1430572 ATTAAATC
1 ATTAAATC
1430580 ATTAAA
1 ATTAAA
1430586 GTTAAATAAT
Statistics
Matches: 323, Mismatches: 43, Indels: 96
0.70 0.09 0.21
Matches are distributed among these distances:
6 95 0.29
7 7 0.02
8 186 0.58
9 35 0.11
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (8 bp):
ATTAAATC
Found at i:1430245 original size:37 final size:37
Alignment explanation
Indices: 1430195--1430569 Score: 510
Period size: 37 Copynumber: 10.0 Consensus size: 37
1430185 CATTAAAATT
*
1430195 AAGTAATTATTATTAAATTATTAAAATTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
1430232 AAGTAATTATTATTAAATC------ATTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
* *
1430263 AAGTAATTATTATTAAAGCATTAAAGTTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
1430300 AAGTAATTATTATTAAATCATTAAATCATTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAA--ATTAAATCATTA
*
1430339 AAATAATTATTATTAAATCATTAAATCATTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAA--ATTAAATCATTA
*
1430378 AAGTAATTATTATTAAATCATTAAAGTTAAATCATTAA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATT-A
* *
1430416 ATCATTAAAGTTAAATCATTAAATCATTAAAATTAAATCATTA
1 A--AGT-AA-TT--ATTATTAAATCATTAAAATTAAATCATTA
*
1430459 AAGTAATTATTATTAAATCACTAAAATTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
*
1430496 AAGTAATTATTATTAAATCATTAAAGTTAAATCATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
* *
1430533 AAGTAATTATTATTAAATCATTAAAGTTAAATAATTA
1 AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
1430570 TTATTAAATC
Statistics
Matches: 306, Mismatches: 17, Indels: 30
0.87 0.05 0.08
Matches are distributed among these distances:
31 30 0.10
37 161 0.53
38 2 0.01
39 75 0.25
40 4 0.01
41 4 0.01
42 2 0.01
43 2 0.01
44 26 0.08
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (37 bp):
AAGTAATTATTATTAAATCATTAAAATTAAATCATTA
Found at i:1430248 original size:15 final size:15
Alignment explanation
Indices: 1430228--1430280 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
1430218 AAATTAAATC
1430228 ATTAAAGTAATTATT
1 ATTAAAGTAATTATT
* *
1430243 ATTAAA-TCATTAAATC
1 ATTAAAGTAATT--ATT
1430259 ATTAAAGTAATTATT
1 ATTAAAGTAATTATT
1430274 ATTAAAG
1 ATTAAAG
1430281 CATTAAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 4 0.13
15 15 0.48
16 8 0.26
17 4 0.13
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.42
Consensus pattern (15 bp):
ATTAAAGTAATTATT
Found at i:1430529 original size:74 final size:68
Alignment explanation
Indices: 1430366--1430599 Score: 259
Period size: 74 Copynumber: 3.4 Consensus size: 68
1430356 TCATTAAATC
* * *
1430366 ATTAAATCATTAAAG-TAATTATTATTAAA-TCATTA-AAGTTAAATCATTAAATCATTAAAGTT
1 ATTAAATCATTAAAGTTAA--ATCATTAAAGTAATTATTA-TTAAATCATTAAATCATTAAAG-T
*
1430428 AA--ATC
62 AATTATT
*
1430433 ATTAAATCATTAAAATTAAATCATTAAAGTAATTATTATTAAATCACTAAAATTAAATCATTAAA
1 ATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAAT--C----ATTAAATCATTAAA
1430498 GTAATTATT
60 GTAATTATT
*
1430507 ATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCATTAAA--GTTAAA-TAATT
1 ATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCATTAAATCATTAAAGTAATT
1430569 ATT
66 ATT
*
1430572 ATTAAATCATTAAAGTTAAATAATTAAA
1 ATTAAATCATTAAAGTTAAATCATTAAA
1430600 TTTAAATAAT
Statistics
Matches: 148, Mismatches: 8, Indels: 24
0.82 0.04 0.13
Matches are distributed among these distances:
65 35 0.24
66 13 0.09
67 25 0.17
68 10 0.07
69 1 0.01
72 4 0.03
73 15 0.10
74 45 0.30
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (68 bp):
ATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCATTAAATCATTAAAGTAATT
ATT
Found at i:1430604 original size:28 final size:27
Alignment explanation
Indices: 1430434--1430606 Score: 109
Period size: 23 Copynumber: 6.7 Consensus size: 27
1430424 AGTTAAATCA
* *
1430434 TTAAATCATTAAAATTAAATCATTAAAG
1 TTAAATAATT-AATTTAAATCATTAAAG
* * *
1430462 -T-AATTATT-A-TTAAATCACTAAAA
1 TTAAATAATTAATTTAAATCATTAAAG
* ** *
1430485 TTAAATCATTAAAGT-AATTATT--A-
1 TTAAATAATTAATTTAAATCATTAAAG
* *
1430508 TTAAATCATTAAAGTTAAATCATTAAAG
1 TTAAATAATT-AATTTAAATCATTAAAG
*
1430536 -T-AATTATT-A-TTAAATCATTAAAG
1 TTAAATAATTAATTTAAATCATTAAAG
*
1430559 TTAAATAATTATTATTAAATCATTAAAG
1 TTAAATAATTAAT-TTAAATCATTAAAG
1430587 TTAAATAATTAAATTTAAAT
1 TTAAATAATT-AATTTAAAT
1430607 AATAATTATT
Statistics
Matches: 116, Mismatches: 14, Indels: 30
0.73 0.09 0.19
Matches are distributed among these distances:
23 36 0.31
24 8 0.07
25 18 0.16
26 18 0.16
27 4 0.03
28 30 0.26
29 2 0.02
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.40
Consensus pattern (27 bp):
TTAAATAATTAATTTAAATCATTAAAG
Found at i:1430618 original size:14 final size:14
Alignment explanation
Indices: 1430529--1430621 Score: 52
Period size: 14 Copynumber: 6.6 Consensus size: 14
1430519 AAGTTAAATC
*
1430529 ATTAAAGTAATTATT
1 ATTAAA-TAATAATT
*
1430544 ATTAAATCATTAA--
1 ATTAAAT-AATAATT
*
1430557 AGTTAAATAATTATT
1 A-TTAAATAATAATT
*
1430572 ATTAAATCATTAA--
1 ATTAAAT-AATAATT
*
1430585 AGTTAAATAATTAAAT
1 A-TTAAATAA-TAATT
1430601 -TTAAATAATAATT
1 ATTAAATAATAATT
1430614 ATTAAATA
1 ATTAAATA
1430622 TGTACTCGAG
Statistics
Matches: 60, Mismatches: 8, Indels: 21
0.67 0.09 0.24
Matches are distributed among these distances:
13 10 0.17
14 37 0.62
15 13 0.22
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (14 bp):
ATTAAATAATAATT
Found at i:1433993 original size:18 final size:17
Alignment explanation
Indices: 1433970--1434003 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
1433960 AAATTATTAG
1433970 TCTCACGCTTCAGACGAA
1 TCTCACGCTTCA-ACGAA
1433988 TCTCACGCTTCAACGA
1 TCTCACGCTTCAACGA
1434004 CAAACAATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (17 bp):
TCTCACGCTTCAACGAA
Found at i:1434458 original size:110 final size:110
Alignment explanation
Indices: 1434269--1434488 Score: 397
Period size: 110 Copynumber: 2.0 Consensus size: 110
1434259 AGATTCCCGC
*
1434269 CAGACGACAGGTGAAGACGCTGAGAGATCCACCTTGGCATTCCTTGTAGCATGCAGAAGACGCCG
1 CAGACGACAGGTGAAGACGCCGAGAGATCCACCTTGGCATTCCTTGTAGCATGCAGAAGACGCCG
*
1434334 AGAGATCCTACAGTCCAATTGCTTGAAGACGCCGAGCATTCCCAT
66 AGAGATCCTACAGTCCAATTACTTGAAGACGCCGAGCATTCCCAT
*
1434379 CAGACGACAGGTGAAGACGCCGAGAGATCCACCTTGGCATTCCTTGTAGCATGCATAAGACGCCG
1 CAGACGACAGGTGAAGACGCCGAGAGATCCACCTTGGCATTCCTTGTAGCATGCAGAAGACGCCG
1434444 AGAGATCCCT-CAGTCCAATTACTTGAAGACGCCGAGCATTCCCAT
66 AGAGAT-CCTACAGTCCAATTACTTGAAGACGCCGAGCATTCCCAT
1434489 AGTGTCATAA
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
110 103 0.97
111 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (110 bp):
CAGACGACAGGTGAAGACGCCGAGAGATCCACCTTGGCATTCCTTGTAGCATGCAGAAGACGCCG
AGAGATCCTACAGTCCAATTACTTGAAGACGCCGAGCATTCCCAT
Found at i:1434584 original size:43 final size:43
Alignment explanation
Indices: 1434523--1434610 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
1434513 AGAAAGCAAT
1434523 CATGGAAAAATTAACCCTAAAAACACCGAGATATCCAAAGAAC
1 CATGGAAAAATTAACCCTAAAAACACCGAGATATCCAAAGAAC
1434566 CATGGAAAAATTAACCCTAAAAACACCGAGATATCCAAAGAAC
1 CATGGAAAAATTAACCCTAAAAACACCGAGATATCCAAAGAAC
1434609 CA
1 CA
1434611 CTTGAAGCAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.51, C:0.24, G:0.11, T:0.14
Consensus pattern (43 bp):
CATGGAAAAATTAACCCTAAAAACACCGAGATATCCAAAGAAC
Found at i:1435993 original size:15 final size:16
Alignment explanation
Indices: 1435955--1435995 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1435945 CCAGAGCCTC
* *
1435955 TGAATCATTCAGCATT
1 TGAATCATTCAACACT
1435971 TGAATCATTCAACACT
1 TGAATCATTCAACACT
1435987 T-AATCATTC
1 TGAATCATTC
1435996 TGATGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (16 bp):
TGAATCATTCAACACT
Found at i:1436389 original size:16 final size:16
Alignment explanation
Indices: 1436368--1436398 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1436358 GATTTCTAAA
1436368 AAATGAAAACAAAAAT
1 AAATGAAAACAAAAAT
*
1436384 AAATGAAAATAAAAA
1 AAATGAAAACAAAAA
1436399 AACATAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (16 bp):
AAATGAAAACAAAAAT
Found at i:1438213 original size:20 final size:20
Alignment explanation
Indices: 1438189--1438233 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
1438179 ATTATTAATA
1438189 AAAAATATAAATAAAATATTT
1 AAAAATATAAATAAAA-ATTT
* *
1438210 AAAAATATAAATGATAATTT
1 AAAAATATAAATAAAAATTT
1438230 AAAA
1 AAAA
1438234 TTCTATGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAAATATAAATAAAAATTT
Found at i:1439267 original size:14 final size:14
Alignment explanation
Indices: 1439250--1439282 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
1439240 ATTTCTATGT
*
1439250 AGGGAATTATTTGC
1 AGGGAATTATTTAC
1439264 AGGGAATTATTTAC
1 AGGGAATTATTTAC
1439278 AGGGA
1 AGGGA
1439283 TTACTCCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (14 bp):
AGGGAATTATTTAC
Found at i:1439767 original size:21 final size:21
Alignment explanation
Indices: 1439741--1439781 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1439731 ACGTCTTCAG
*
1439741 GCAAAATAGGAAGATTCCAAT
1 GCAAAATAGGAAGACTCCAAT
1439762 GCAAAATAGGAAGACTCCAA
1 GCAAAATAGGAAGACTCCAA
1439782 GCTTACATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.17, G:0.20, T:0.15
Consensus pattern (21 bp):
GCAAAATAGGAAGACTCCAAT
Found at i:1440268 original size:17 final size:17
Alignment explanation
Indices: 1440242--1440291 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
1440232 AATGTTAAAA
1440242 ATATTGTTAATATATTT
1 ATATTGTTAATATATTT
* **
1440259 ATATTTTTAATA-A-AA
1 ATATTGTTAATATATTT
1440274 ATATTGTTAATATATTT
1 ATATTGTTAATATATTT
1440291 A
1 A
1440292 CATTTTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
15 11 0.44
16 2 0.08
17 12 0.48
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
ATATTGTTAATATATTT
Found at i:1440273 original size:32 final size:32
Alignment explanation
Indices: 1440237--1440300 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
1440227 GTAAAAATGT
*
1440237 TAAAAATATTGTTAATATATTTATATTTTTAA
1 TAAAAATATTGTTAATATATTTACATTTTTAA
1440269 TAAAAATATTGTTAATATATTTACATTTTTAA
1 TAAAAATATTGTTAATATATTTACATTTTTAA
1440301 AACTTTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (32 bp):
TAAAAATATTGTTAATATATTTACATTTTTAA
Found at i:1440283 original size:15 final size:15
Alignment explanation
Indices: 1440237--1440285 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
1440227 GTAAAAATGT
1440237 TAAAAATATTGTTAA
1 TAAAAATATTGTTAA
** *
1440252 TATATTTATATTTTTAA
1 TA-A-AAATATTGTTAA
1440269 TAAAAATATTGTTAA
1 TAAAAATATTGTTAA
1440284 TA
1 TA
1440286 TATTTACATT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
15 13 0.50
16 2 0.08
17 11 0.42
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
TAAAAATATTGTTAA
Found at i:1445408 original size:13 final size:13
Alignment explanation
Indices: 1445390--1445416 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1445380 AGAGCTTGGT
1445390 ATGAAAGATTGTC
1 ATGAAAGATTGTC
1445403 ATGAAAGATTGTC
1 ATGAAAGATTGTC
1445416 A
1 A
1445417 AATTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (13 bp):
ATGAAAGATTGTC
Found at i:1446785 original size:21 final size:21
Alignment explanation
Indices: 1446746--1446841 Score: 99
Period size: 23 Copynumber: 4.5 Consensus size: 21
1446736 TTATACATGC
1446746 ATCGATACCCCCTTTGAATAGGT
1 ATCGATA-CCCCTTTGAAT-GGT
*
1446769 ATTGATACCCC-TTGAATAGGT
1 ATCGATACCCCTTTGAAT-GGT
1446790 ATCGATACCCTCTTTGAATGAGT
1 ATCGATACCC-CTTTGAATG-GT
*
1446813 ATCGATACCCCCTT--ATGGT
1 ATCGATACCCCTTTGAATGGT
*
1446832 ATTGATACCC
1 ATCGATACCC
1446842 TCTGTCAGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
19 11 0.17
20 3 0.05
21 19 0.29
22 9 0.14
23 24 0.36
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (21 bp):
ATCGATACCCCTTTGAATGGT
Found at i:1468235 original size:19 final size:19
Alignment explanation
Indices: 1468207--1468244 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1468197 TATAAAACAA
* *
1468207 AATTATATAATTATTAAAT
1 AATTAAATAATTATAAAAT
1468226 AATTAAATAATTATAAAAT
1 AATTAAATAATTATAAAAT
1468245 TCAACTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTAAATAATTATAAAAT
Found at i:1469522 original size:88 final size:92
Alignment explanation
Indices: 1469421--1469644 Score: 257
Period size: 96 Copynumber: 2.4 Consensus size: 92
1469411 TTAAACAAAA
* *
1469421 AATATGT-TAAATCAAAATAAATAGTCTAATTAATTTATAT-AA-AAAA-T-ATAATTTAAATTA
1 AATATGTAT-AATCAAAATAAATAGTCTAATTAATTTATATAAATAAAACTGAAAATATAAATTA
1469481 AACTTACAAAA-CTACTCAAATACAACTT
65 AACTTACAAAATC-ACTCAAATACAACTT
*
1469509 AATATGTATAATCAAAATAAATAGTCTAA-TAATTATAATTTAAATTAAAACCGTGAAAATATAA
1 AATATGTATAATCAAAATAAATAGTCTAATTAATT-T-ATATAAA-TAAAA-C-TGAAAATATAA
* * **
1469573 ATTAAACTTACTAAATCACTCGAATACAGTTT
61 ATTAAACTTACAAAATCACTCAAATACAACTT
1469605 AATATGTA-ATATCAAAATAAATAGTCTAATTAATTTATAT
1 AATATGTATA-ATCAAAATAAATAGTCTAATTAATTTATAT
1469645 TTACAATAAA
Statistics
Matches: 115, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
87 5 0.04
88 28 0.24
89 4 0.03
90 2 0.02
92 4 0.03
95 5 0.04
96 61 0.53
97 6 0.05
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.35
Consensus pattern (92 bp):
AATATGTATAATCAAAATAAATAGTCTAATTAATTTATATAAATAAAACTGAAAATATAAATTAA
ACTTACAAAATCACTCAAATACAACTT
Found at i:1469599 original size:96 final size:98
Alignment explanation
Indices: 1469474--1469658 Score: 263
Period size: 96 Copynumber: 1.9 Consensus size: 98
1469464 AAATATAATT
1469474 TAAATTAAACTTACAAAACTACTCAAATACAACTTAATATGT-ATAATCAAAATAAATAGTCTAA
1 TAAATTAAACTTACAAAACTACTCAAATACAACTTAATATGTAAT-ATCAAAATAAATAGTCTAA
*
1469538 -TAA-TTATAATTTA-AATTAAAACCGTGAAAATA
65 TTAATTTAT-ATTTACAATAAAAACCGTGAAAATA
* * **
1469570 TAAATTAAACTTACTAAA-TCACTCGAATACAGTTTAATATGTAATATCAAAATAAATAGTCTAA
1 TAAATTAAACTTACAAAACT-ACTCAAATACAACTTAATATGTAATATCAAAATAAATAGTCTAA
1469634 TTAATTTATATTTACAATAAAAACC
65 TTAATTTATATTTACAATAAAAACC
1469659 CTCAACCCTA
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
95 1 0.01
96 55 0.70
97 10 0.13
98 13 0.16
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (98 bp):
TAAATTAAACTTACAAAACTACTCAAATACAACTTAATATGTAATATCAAAATAAATAGTCTAAT
TAATTTATATTTACAATAAAAACCGTGAAAATA
Found at i:1469973 original size:207 final size:206
Alignment explanation
Indices: 1469460--1469991 Score: 496
Period size: 207 Copynumber: 2.6 Consensus size: 206
1469450 TTAATTTATA
* * *
1469460 TAAAAAATATAATTTAAATTAAACTTA-CAAAACTACTCAAATACAACTTAATATGTATAATCAA
1 TAAACAATA-AATTTAAATTAAACTTACCAAAAC-ACTCAAATACAATTTAATATGTAAAATCAA
* ** * *
1469524 AATAAATAGTCTAATAA-TTATAATTTAAATTAAAACCGT-GAAAATATAAA-TT-AAACTTACT
64 AATAAATAGTCTAATAATTTAT-ATTTAAAATAAAA-AATAAAAAATAAAAATTTAAAACTTACT
* ** * * * *
1469585 AAATCACTCGAATACAGTTTAATATGTAATATCAAAATAAATAGTCTAATTAATTTATATTTACA
127 AAATCACTCAAATACAACTTAATATGTAAAATCAAAATAAACAATCTAATTAATTTATATTTAAA
* **
1469650 ATAAAAACCCTCAACCC
192 ATAAAAA--CTAAAAAC
* * * * * * *
1469667 TAAACAATAAATTTTACACTAAACTTACCAAACCACTCAAATACGATTTAATCTATAAAATAAAA
1 TAAACAATAAA-TTTAAATTAAACTTACCAAAACACTCAAATACAATTTAATATGTAAAATCAAA
* *
1469732 ATAATTAGTCTAATAATTTATA-TTACTCAATAAAAAATAAAAAATAAAAATTTAAACTAACTTA
65 ATAAATAGTCTAATAATTTATATTTA--AAATAAAAAATAAAAAATAAAAATTT-AA--AACTTA
* *
1469796 CTAAA-CTATTTAAATACAACTTAATATGTAAAATCAAAATAAACAATCTAA-TAA-TTATTATT
125 CTAAATC-ACTCAAATACAACTTAATATGTAAAATCAAAATAAACAATCTAATTAATTTA-TATT
*
1469858 TAAAATAAAAA-TAAAAAT
188 TAAAATAAAAACTAAAAAC
* * * *
1469876 TACACAA-AAATTTAAATTAAACTTACCAAATCACGCAAATACAATTTAATTTGTAAAATCAAAA
1 TAAACAATAAATTTAAATTAAACTTACCAAAACACTCAAATACAATTTAATATGTAAAATCAAAA
* * *
1469940 TAAATAATATAATTAATTTATATTTAAAAT-AAAAATGAAACAAT-AAAATTTA
66 TAAATAGTCTAA-TAATTTATATTTAAAATAAAAAAT-AAAAAATAAAAATTTA
1469992 CATTAAATTT
Statistics
Matches: 265, Mismatches: 44, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
205 1 0.00
206 18 0.07
207 127 0.48
208 36 0.14
209 14 0.05
211 4 0.02
212 18 0.07
213 47 0.18
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.32
Consensus pattern (206 bp):
TAAACAATAAATTTAAATTAAACTTACCAAAACACTCAAATACAATTTAATATGTAAAATCAAAA
TAAATAGTCTAATAATTTATATTTAAAATAAAAAATAAAAAATAAAAATTTAAAACTTACTAAAT
CACTCAAATACAACTTAATATGTAAAATCAAAATAAACAATCTAATTAATTTATATTTAAAATAA
AAACTAAAAAC
Found at i:1470017 original size:102 final size:100
Alignment explanation
Indices: 1469459--1470005 Score: 394
Period size: 102 Copynumber: 5.3 Consensus size: 100
1469449 ATTAATTTAT
* * * * * * *
1469459 ATAAAAAATATAATTTAAATTAAACTTACAAAACTACTCAAATACAACTTAATATGTATAATCAA
1 ATAAACAATAAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAAAATCAA
* *
1469524 AATAAATAGTCTAATAA-TTATAATTT-AAAT---T
66 AATAAATAATCTAATAATTTAT-ATTTAAAATAAAA
** * * * * * * *
1469555 A-AAACCGTGAAAATATAAATTAAACTTACTAAATCACTCGAATACAGTTTAATATGTAATATCA
1 ATAAACAAT-AAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAAAATCA
* *
1469619 AAATAAATAGTCTAATTAATTTATATTTACAATAAAAACCCTCA
65 AAATAAATAATCTAA-TAATTTATATTTA-AA-ATAAA-----A
* * * * *
1469663 ACCCTAAACAATAAATTTTACACTAAACTTACCAAACCACTCAAATACGATTTAATCTATAAAAT
1 A---TAAACAATAAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAAAAT
* * * *
1469728 AAAAATAATTAGTCTAATAATTTATA-TTACTCAATAAAAA
63 CAAAATAAATAATCTAATAATTTATATTTA--AAAT-AAAA
* * * * * *
1469768 ATAAAAAATAAAAATTTAAACT-AACTTACTAAACTATTTAAATACAACTTAATATGTAAAATCA
1 ATAAACAAT-AAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAAAATCA
*
1469832 AAATAAACAATCTAATAA-TTATTATTTAAAATAAAA
65 AAATAAATAATCTAATAATTTA-TATTTAAAATAAAA
* * * *
1469868 ATAAA-AATTACACAAAAATTTAAATTAAACTTACCAAATCACGCAAATACAATTTAATTTGTAA
1 ATAAACAA-T-----AAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAA
*
1469932 AATCAAAATAAATAATATAATTAATTTATATTTAAAATAAAA
60 AATCAAAATAAATAATCTAA-TAATTTATATTTAAAATAAAA
* * *
1469974 ATGAAACAATAAAATTTACATTAAATTTACCA
1 AT-AAACAATAAAATTTAAACTAAACTTACCA
1470006 GAAAATTCAA
Statistics
Matches: 355, Mismatches: 63, Indels: 60
0.74 0.13 0.13
Matches are distributed among these distances:
95 4 0.01
96 61 0.17
97 7 0.02
98 4 0.01
99 4 0.01
100 11 0.03
101 6 0.02
102 77 0.22
103 13 0.04
104 12 0.03
105 49 0.14
106 19 0.05
107 7 0.02
108 3 0.01
109 4 0.01
110 13 0.04
111 56 0.16
112 5 0.01
ACGTcount: A:0.54, C:0.12, G:0.03, T:0.32
Consensus pattern (100 bp):
ATAAACAATAAAATTTAAACTAAACTTACCAAACCACTCAAATACAATTTAATATGTAAAATCAA
AATAAATAATCTAATAATTTATATTTAAAATAAAA
Found at i:1470201 original size:25 final size:25
Alignment explanation
Indices: 1470172--1470222 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
1470162 CTTACATGCT
*
1470172 TTATTGGTGCACAATAATGACACCA
1 TTATTAGTGCACAATAATGACACCA
* *
1470197 TTATTAGTGCCCAATAATGGCACCA
1 TTATTAGTGCACAATAATGACACCA
1470222 T
1 T
1470223 GATTTGGGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
TTATTAGTGCACAATAATGACACCA
Found at i:1470645 original size:107 final size:107
Alignment explanation
Indices: 1470554--1470756 Score: 259
Period size: 107 Copynumber: 1.9 Consensus size: 107
1470544 ACTTTTAAGG
* * * *
1470554 AATA-ATTAAGGAATTATTCTGTTAATATATGGAGAATAATTAAAAGTAATATTAAAATAATAGA
1 AATATATTAAAGAATTATTATGTTAATATACGGAGAATAATTAAAAGTAATATGAAAATAATAGA
**
1470618 AAACCTTCCATATTTTTATTGTTTTAAAAATTTCTGTGAAAA
66 AAACCTTCCATATTTTTATTGTTTTAAAAATGACTGTGAAAA
* * *
1470660 AATATTTTAAAGAATTATTATGTTAATATACGGGGAATAATTAAAAGTAATATGAAAATAAT-GG
1 AATATATTAAAGAATTATTATGTTAATATACGGAGAATAATTAAAAGTAATATGAAAATAATAGA
* * *
1470724 AAACATTCCA-AGTTTATATTGCTTTCAAAAATG
66 AAACCTTCCATA-TTTTTATTG-TTTTAAAAATG
1470757 CATCGTGGAA
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
105 1 0.01
106 22 0.27
107 60 0.72
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (107 bp):
AATATATTAAAGAATTATTATGTTAATATACGGAGAATAATTAAAAGTAATATGAAAATAATAGA
AAACCTTCCATATTTTTATTGTTTTAAAAATGACTGTGAAAA
Found at i:1475672 original size:28 final size:28
Alignment explanation
Indices: 1475612--1475672 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
1475602 AGAGATGTAC
1475612 AAAAAAAATCCGAACATCCGATTTTACG
1 AAAAAAAATCCGAACATCCGATTTTACG
* *
1475640 TAAAAAATATCCGAA-A-CCAGATTTTAGG
1 -AAAAAAAATCCGAACATCC-GATTTTACG
1475668 AAAAA
1 AAAAA
1475673 TCGGTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 7 0.24
28 9 0.31
29 13 0.45
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.21
Consensus pattern (28 bp):
AAAAAAAATCCGAACATCCGATTTTACG
Found at i:1477683 original size:22 final size:22
Alignment explanation
Indices: 1477656--1477775 Score: 100
Period size: 22 Copynumber: 5.3 Consensus size: 22
1477646 ATCGTATATA
1477656 ATACTTATATATTTTATATTAT
1 ATACTTATATATTTTATATTAT
* *
1477678 ATACTTATATACTTTATATTAC
1 ATACTTATATATTTTATATTAT
* * *
1477700 ATGCTTATATACTTTAGTCTT-T
1 ATACTTATATATTTTA-TATTAT
* * *
1477722 ATAATTATACT-TTATAGATATAAT
1 ATACTTATA-TATT-T-TATATTAT
1477746 ATACTTATATATTATTATATATAT
1 ATACTTATATATT-TTATAT-TAT
1477770 ATACTT
1 ATACTT
1477776 TGTACTAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
22 43 0.56
23 12 0.16
24 22 0.29
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.53
Consensus pattern (22 bp):
ATACTTATATATTTTATATTAT
Found at i:1477687 original size:8 final size:8
Alignment explanation
Indices: 1477656--1477713 Score: 61
Period size: 8 Copynumber: 7.8 Consensus size: 8
1477646 ATCGTATATA
1477656 ATACTTAT
1 ATACTTAT
*
1477664 ATA-TTTT
1 ATACTTAT
1477671 ATA-TTAT
1 ATACTTAT
1477678 ATACTTAT
1 ATACTTAT
1477686 ATACTT-T
1 ATACTTAT
*
1477693 ATA-TTAC
1 ATACTTAT
*
1477700 ATGCTTAT
1 ATACTTAT
1477708 ATACTT
1 ATACTT
1477714 TAGTCTTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 2 0.05
7 18 0.44
8 21 0.51
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.53
Consensus pattern (8 bp):
ATACTTAT
Found at i:1477708 original size:44 final size:46
Alignment explanation
Indices: 1477656--1477781 Score: 118
Period size: 44 Copynumber: 2.7 Consensus size: 46
1477646 ATCGTATATA
1477656 ATACTTATATATTTTATATTATATACTTATATACTTTAT-AT-T-AC
1 ATACTTATATATTTTATATTATATACTT-TATACTTTATAATATAAC
* * * * *
1477700 ATGCTTATATACTTTAGTCTT-TATA-ATTATACTTTATAGATATAAT
1 ATACTTATATATTTTA-TATTATATACTTTATACTTTATA-ATATAAC
*
1477746 ATACTTATATATTATTATATATATATACTTTGTACT
1 ATACTTATATATT-TTATAT-TATATACTTTATACT
1477782 AAAACTTTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
42 10 0.16
43 1 0.02
44 20 0.32
45 4 0.06
46 14 0.22
47 4 0.06
48 4 0.06
49 6 0.10
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (46 bp):
ATACTTATATATTTTATATTATATACTTTATACTTTATAATATAAC
Found at i:1477930 original size:24 final size:23
Alignment explanation
Indices: 1477889--1478060 Score: 97
Period size: 23 Copynumber: 7.3 Consensus size: 23
1477879 TTATAGTAAA
*
1477889 ACTTTATATATATATATATACAT
1 ACTTTATATTTATATATATACAT
1477912 ACTTTATAGTTTATATATATACAT
1 ACTTTATA-TTTATATATATACAT
*
1477936 AC-TTATACTTTATATTATACTTATAT
1 ACTTTATA-TTTATA-TATA--TACAT
* *
1477962 ACTTTTGTCTTTATA-AT-TAC--
1 AC-TTTATATTTATATATATACAT
* *
1477982 ACTTTATATATT-TTTATATATAT
1 ACTTTATAT-TTATATATATACAT
* *
1478005 A-TATATATATATATAATATACTTAT
1 ACTTTATATTTATAT-ATATAC--AT
* * *
1478030 ACTTTATATATATATATGTATAT
1 ACTTTATATTTATATATATACAT
*
1478053 GCTTTATA
1 ACTTTATA
1478061 GTAAACTTTA
Statistics
Matches: 115, Mismatches: 18, Indels: 32
0.70 0.11 0.19
Matches are distributed among these distances:
19 6 0.05
20 6 0.05
21 3 0.03
22 10 0.09
23 34 0.30
24 20 0.17
25 9 0.08
26 18 0.16
27 6 0.05
28 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.52
Consensus pattern (23 bp):
ACTTTATATTTATATATATACAT
Done.