genome.fa.s1449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001449.1 Hibiscus syriacus cultivar Beakdansim tig00002800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97313

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13230--13285	3	18.7	3	92	0	94	37	0	28	33	1.58
13215--13288	6	11.8	6	87	8	58	44	0	21	33	1.53
14022--14153	69	1.9	70	95	1	239	43	16	9	31	1.79
14336--14496	66	2.4	68	87	3	220	40	16	8	35	1.78
14259--14429	93	1.8	93	86	2	245	39	12	8	39	1.73
14211--14522	159	2.0	158	90	1	500	39	14	8	37	1.76
14470--14549	26	3.0	26	87	1	106	40	15	10	35	1.80
14390--14663	120	2.3	122	74	10	276	37	15	7	39	1.76
15887--15915	12	2.3	13	94	5	51	41	0	0	58	0.98
15854--15985	69	1.9	70	93	1	230	35	9	9	46	1.67
15954--15986	12	2.8	12	86	13	50	42	0	0	57	0.98
20874--20909	17	2.2	17	90	5	56	36	0	0	63	0.94
20865--20908	23	1.9	23	81	9	54	36	0	0	63	0.95
21072--21128	15	3.9	15	83	2	71	40	7	19	33	1.78
21089--21138	15	3.4	15	80	5	66	46	8	14	32	1.73
21068--21139	30	2.4	30	88	2	110	47	6	15	30	1.72
21121--21170	20	2.5	20	90	0	82	44	10	12	34	1.75
21494--21647	28	5.7	27	73	20	112	51	1	0	45	1.17
21508--21645	50	2.7	52	76	17	135	52	2	0	44	1.18
21841--21957	42	2.8	42	90	0	180	46	16	17	19	1.85
30454--30565	41	2.7	41	84	5	154	43	19	10	25	1.83
34220--34271	9	5.6	10	78	13	58	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34228--34271	19	2.3	19	84	7	54	29	0	0	70	0.88
43174--43198	2	12.5	2	100	0	50	48	0	0	52	1.00
45363--45455	21	4.6	20	78	4	96	38	18	24	18	1.92
45360--45455	41	2.3	41	98	0	183	39	17	23	18	1.92
45363--45455	20	4.6	20	78	4	96	38	18	24	18	1.92
45444--45538	20	4.7	20	77	2	82	34	23	17	24	1.96
45441--45518	41	1.9	41	83	0	102	39	20	16	23	1.92
45726--45770	23	2.0	23	95	0	81	20	46	15	17	1.84
46034--46071	20	1.9	20	88	0	58	13	15	21	50	1.78
47390--47434	18	2.5	18	85	0	63	26	42	15	15	1.87
47906--47972	20	3.4	20	81	2	73	38	23	22	14	1.92
47961--48018	14	3.9	14	77	16	62	48	24	17	10	1.78
47945--48035	32	2.8	33	93	3	157	47	21	18	12	1.81
47945--48040	19	5.6	18	67	25	66	45	21	19	12	1.83
48052--48109	14	3.9	14	79	16	71	8	17	25	48	1.75
48047--48117	32	2.2	33	97	2	135	8	19	23	47	1.77
48098--48164	19	3.5	19	79	4	80	14	22	23	38	1.92
49825--49861	14	2.6	14	95	0	65	27	0	21	51	1.48
51085--51152	24	2.8	24	80	4	66	27	14	19	38	1.91
51327--51351	12	2.1	12	100	0	50	72	0	28	0	0.86
53639--53736	19	5.7	19	69	22	90	43	19	24	12	1.85
53639--53732	33	2.8	33	98	0	179	43	19	24	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53895--53931	14	2.6	14	91	0	65	45	24	0	29	1.53
55289--55355	21	3.2	21	68	4	55	19	20	35	23	1.95
55289--55411	42	2.9	41	80	7	113	22	17	36	22	1.95
57440--57535	33	2.9	33	87	1	129	39	26	21	12	1.89
57412--57577	20	9.1	19	75	16	145	43	22	21	12	1.86
57552--57611	30	2.0	30	96	0	111	40	18	20	21	1.92
57603--57648	19	2.3	20	92	3	76	8	15	26	50	1.73
58204--58255	20	2.6	20	87	6	70	25	17	28	28	1.97
58287--58379	20	4.6	20	78	4	96	18	24	18	38	1.92
58287--58382	41	2.3	41	98	0	183	18	23	17	39	1.92
59805--59849	23	1.9	24	82	13	58	33	11	8	46	1.70
61438--61512	2	37.5	2	100	0	150	49	0	0	50	1.00
63933--63982	22	2.3	22	86	6	66	50	0	4	46	1.20
63939--63983	22	2.0	23	91	4	74	44	0	4	51	1.21
64058--64187	3	42.3	3	80	13	122	60	4	3	31	1.35
66927--66987	22	2.8	22	87	0	86	24	26	19	29	1.99
67673--67751	42	1.9	41	82	7	97	26	26	22	24	2.00
76154--76241	24	3.7	24	90	0	131	26	18	21	34	1.96
76415--76447	2	16.5	2	100	0	66	48	0	0	51	1.00
76447--76535	2	44.5	2	100	0	178	0	0	49	50	1.00
84740--84797	2	29.0	2	100	0	116	50	0	0	50	1.00
84872--84902	3	10.0	3	93	6	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84873--84920	22	2.2	22	85	7	62	37	0	2	60	1.09
84872--84911	13	3.2	13	92	3	64	35	0	2	62	1.09

Tables:   1

The End!