genome.fa.s145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000145.1 Hibiscus syriacus cultivar Beakdansim tig00000260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57312

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076--1118	20	2.2	20	91	0	68	23	25	25	25	2.00
5479--5527	24	2.1	24	88	3	73	59	14	2	24	1.46
6672--6764	31	2.9	31	77	16	93	35	8	29	26	1.86
10667--10740	23	3.2	23	92	0	112	39	8	14	37	1.76
10699--10911	87	2.4	87	95	0	381	39	11	15	32	1.84
10786--10834	23	2.1	23	88	0	71	40	8	18	32	1.80
11622--12666	401	2.6	401	93	0	1786	28	13	14	43	1.83
11622--12666	201	5.2	201	94	0	1779	28	13	14	43	1.83
12494--12834	168	2.0	170	93	2	580	28	14	14	43	1.84
12665--13249	199	2.9	199	91	2	910	27	14	14	42	1.85
13595--13643	19	2.6	19	96	0	89	55	10	2	32	1.45
15102--15140	18	2.2	18	95	0	69	5	41	0	53	1.23
17125--17174	19	2.6	20	87	9	77	38	18	0	44	1.50
17560--18568	183	5.6	181	83	6	1210	27	14	13	44	1.82
18088--18404	163	1.9	164	87	1	456	27	13	11	47	1.78
18496--18534	20	1.9	21	89	5	62	15	15	23	46	1.83
20859--20904	2	23.0	2	100	0	92	50	0	0	50	1.00
28108--28197	45	2.0	45	97	0	171	58	15	5	20	1.56
28108--28180	23	3.2	23	68	24	73	56	17	6	19	1.63
29220--29255	18	2.0	18	88	0	54	8	36	25	30	1.85
32827--32876	20	2.5	20	100	0	100	26	20	18	36	1.95
34648--34678	6	5.2	6	100	0	62	48	0	35	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35890--35946	25	2.3	25	100	0	114	40	3	3	52	1.35
38444--38484	21	1.9	22	95	5	75	39	14	19	26	1.90
48365--48460	51	1.9	50	91	2	156	16	31	27	25	1.97
48365--48485	51	2.4	51	84	1	154	18	33	23	23	1.96
48612--48640	10	2.9	10	100	0	58	20	31	0	48	1.50
48608--48648	10	4.1	10	90	0	55	26	31	0	41	1.56
48690--48728	18	2.2	18	90	4	62	30	2	2	64	1.21
48792--49013	111	2.0	111	96	0	408	36	7	10	45	1.67

Tables:   1

The End!