Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001451.1 Hibiscus syriacus cultivar Beakdansim tig00002803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99032

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--273
30
1.9
30
92
0
98
32
17
8
41
1.80
219--303
30
2.8
31
82
10
95
27
20
8
44
1.79
1070--2717
331
5.0
333
92
5
2654
40
8
15
35
1.77
1065--2709
663
2.5
662
92
5
2706
40
8
15
35
1.77
6141--6194
20
2.6
20
82
5
63
25
16
31
25
1.97
6676--6725
21
2.4
21
83
6
57
42
10
18
30
1.82
6879--6952
23
3.4
22
76
9
62
20
17
28
33
1.95
6900--6959
23
2.7
23
84
2
68
16
16
28
38
1.91
6858--6972
21
5.3
21
74
15
92
20
17
27
33
1.95
13138--13252
54
2.1
54
85
6
153
27
20
22
28
1.99
13138--13272
54
2.5
54
83
5
141
27
20
22
28
1.99
13661--13710
21
2.4
21
86
6
66
40
10
20
30
1.85
13844--13892
21
2.3
21
85
0
62
20
14
30
34
1.92
13890--13951
23
2.7
23
97
0
115
19
25
25
29
1.99
13877--13995
46
2.7
44
80
13
136
26
20
25
28
1.99
18290--18335
22
2.0
23
91
4
76
65
0
2
32
1.05
19595--19728
20
6.6
20
75
3
133
14
23
23
38
1.92
19570--19687
61
1.9
61
98
0
227
16
22
22
38
1.93
19615--19731
41
2.9
41
96
0
216
17
21
23
37
1.94
19574--19708
61
2.2
61
90
1
189
17
21
24
36
1.95
19722--19772
22
2.3
22
100
0
102
17
17
27
37
1.93
19885--19929
6
7.5
6
100
0
90
33
51
15
0
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20330--20374
21
2.1
22
83
4
56
33
28
15
22
1.95
21548--21606
25
2.2
28
82
8
70
44
16
20
18
1.87
24146--24193
23
2.0
24
88
4
71
54
0
0
45
0.99
25783--25856
3
24.0
3
83
5
69
56
0
1
41
1.07
25783--25845
12
5.1
12
83
14
83
57
0
0
42
0.99
33302--33347
22
2.0
23
87
4
67
36
26
21
15
1.93
33320--33352
15
2.1
16
88
5
50
45
27
15
12
1.81
34992--35053
31
2.0
31
96
0
115
16
20
16
46
1.83
38325--38398
30
2.4
31
88
2
114
31
6
8
54
1.56
40753--40789
6
6.5
6
96
3
60
0
16
54
29
1.43
40913--40971
22
2.7
22
97
0
109
40
28
13
16
1.87
40975--41085
20
5.4
20
65
4
78
37
21
22
18
1.94
40967--41110
41
3.5
41
97
0
252
37
22
20
20
1.94
40967--41114
21
7.2
21
65
4
95
37
22
19
19
1.94
52912--52979
33
2.1
33
100
0
136
47
5
2
44
1.42
54345--54398
17
3.2
16
79
7
54
48
5
12
33
1.65
55529--55710
29
6.4
29
78
7
140
29
3
16
50
1.63
55615--55727
58
1.9
58
82
7
140
33
5
10
50
1.60
55649--55727
29
2.7
29
80
9
106
32
3
10
53
1.53
61232--61277
21
2.2
21
96
0
83
13
15
34
36
1.86
62900--62959
29
2.0
30
87
3
86
31
23
18
26
1.97
63347--63477
44
3.0
44
96
0
244
32
22
6
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63615--63742
60
2.2
60
81
8
154
29
22
12
35
1.91
63555--64055
59
8.5
59
77
9
421
28
22
11
37
1.89
65818--65889
30
2.4
30
88
0
108
38
20
22
18
1.93
67247--67418
57
3.0
57
93
0
299
52
12
4
29
1.59
67247--67387
29
4.9
29
65
15
87
52
12
4
29
1.60
67448--67504
28
2.0
29
86
3
80
56
26
7
10
1.59
74098--74143
21
2.2
21
88
0
65
23
23
23
28
2.00
81060--81101
2
21.0
2
100
0
84
50
0
0
50
1.00
82698--82810
60
1.9
60
81
3
138
33
15
13
37
1.87
84751--84801
21
2.4
21
76
0
57
74
1
5
17
1.11
87543--87626
22
3.5
22
66
20
60
25
0
8
66
1.19
87540--87651
51
2.2
51
96
3
208
26
0
7
66
1.18
92440--92480
17
2.3
18
80
16
50
36
4
9
48
1.58
93740--93780
16
2.5
17
80
15
50
36
0
4
58
1.20
96750--96785
15
2.4
15
90
0
54
13
38
5
41
1.68
96759--96788
15
2.0
15
100
0
60
13
40
6
40
1.71

Tables:   1

The End!