genome.fa.s1452.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001452.1 Hibiscus syriacus cultivar Beakdansim tig00002804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102909

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7788--8363	112	5.1	112	91	0	882	44	13	14	26	1.83
8235--8689	182	2.5	181	89	2	662	43	11	15	28	1.82
10194--10263	28	2.4	31	79	13	76	52	5	0	41	1.25
10410--10481	31	2.3	30	84	11	92	54	4	1	40	1.28
19757--19800	20	2.1	22	87	8	65	36	29	0	34	1.58
19789--19831	2	22.0	2	90	4	70	48	0	2	48	1.14
20128--20177	17	3.1	17	68	26	54	20	6	22	52	1.68
20259--20289	15	2.0	16	93	6	55	32	6	41	19	1.77
25008--25164	21	7.8	20	72	7	84	38	24	17	19	1.92
25131--25360	20	11.5	20	81	5	232	36	24	18	19	1.94
26041--26087	24	2.0	24	87	8	69	25	14	21	38	1.92
28560--28792	33	6.9	34	79	11	162	45	18	22	13	1.84
28574--28770	19	11.4	19	73	21	193	46	17	21	14	1.84
28678--28732	14	3.6	14	73	21	56	45	20	23	10	1.82
28574--28792	85	2.6	85	93	3	379	45	17	22	14	1.84
28799--28914	53	2.2	53	96	1	216	14	24	17	43	1.86
28817--28914	19	5.4	19	84	13	143	14	22	17	45	1.84
30997--31089	33	2.8	33	91	0	159	47	20	20	11	1.81
31016--31072	14	3.7	14	72	20	51	45	21	21	12	1.83
30960--31094	19	7.6	19	75	16	119	45	22	19	11	1.83
31090--31218	19	7.3	19	73	17	116	8	17	29	44	1.78
31090--31181	33	2.8	33	93	3	150	7	18	28	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31266--31637	93	4.1	93	95	3	691	45	19	12	22	1.83
31266--31637	182	2.0	186	96	2	691	45	19	12	22	1.83
33342--33428	14	5.7	14	67	24	52	43	24	22	9	1.82
33334--33445	33	3.5	33	87	7	185	46	21	22	9	1.80
33356--33450	19	5.7	18	68	25	75	44	23	22	10	1.83
33470--33546	20	3.8	21	82	5	104	11	25	16	45	1.82
33469--33545	41	1.9	41	94	2	138	12	25	16	44	1.84
33623--33693	33	2.2	33	89	0	106	47	16	22	12	1.80
33873--33927	22	2.5	22	81	0	74	20	16	40	23	1.91
34074--34267	20	9.6	20	81	5	212	19	19	25	36	1.95
34076--34247	60	2.8	60	83	0	236	19	18	26	35	1.95
34254--34336	21	4.0	21	73	6	78	25	16	24	33	1.96
34234--34332	42	2.4	43	77	11	100	21	18	23	37	1.94
35193--35251	10	5.7	10	78	7	64	71	3	3	22	1.16
35193--35251	21	2.8	21	77	10	66	71	3	3	22	1.16
35815--35866	26	2.0	27	85	11	72	48	0	0	51	1.00
35923--35947	10	2.5	10	100	0	50	48	0	0	52	1.00
35924--35965	12	3.6	12	84	12	52	42	2	0	54	1.13
40587--40779	96	2.0	96	97	0	368	30	19	19	31	1.96
40914--40947	16	2.1	17	94	5	61	41	5	17	35	1.74
47224--47301	39	2.0	39	100	0	156	17	15	20	46	1.84
50305--50375	18	3.9	18	86	0	97	21	19	33	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50304--50375	36	2.0	36	94	0	126	20	20	33	25	1.97
51281--51320	21	1.9	21	85	10	55	15	10	37	37	1.80
51349--51390	21	2.0	21	90	0	66	26	26	16	30	1.97
51575--51630	30	1.9	30	96	3	105	46	19	5	28	1.72
51743--51782	21	1.9	21	94	0	71	50	7	10	32	1.64
54176--54216	21	2.0	21	95	0	73	19	29	19	31	1.96
54247--54297	19	2.7	19	84	6	68	23	13	41	21	1.89
61631--61687	29	2.0	29	93	6	98	45	15	5	33	1.69
61631--61689	30	2.0	29	96	3	109	44	15	6	33	1.73
62250--62279	12	2.5	12	94	0	51	60	0	0	40	0.97
63704--63757	20	2.7	20	100	0	108	24	33	20	22	1.97
66625--66695	35	2.0	36	83	2	90	47	5	9	36	1.60
68901--68940	19	2.1	19	86	9	55	25	5	0	70	1.08
69071--69109	2	20.0	2	94	5	71	48	0	0	51	1.00
71321--71377	31	1.9	30	85	7	80	22	1	15	59	1.45
74453--74496	2	22.0	2	100	0	88	50	0	0	50	1.00
82379--82440	23	2.7	22	80	5	70	35	22	25	16	1.94
84010--84068	20	2.8	20	82	10	64	25	23	20	30	1.98
87363--87431	23	3.0	23	84	0	102	31	24	24	18	1.98
88895--88943	20	2.3	21	82	10	55	38	10	6	44	1.63
89172--89226	21	2.6	21	97	0	101	21	25	25	27	2.00
92615--92649	16	2.1	17	89	5	54	68	0	2	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94554--94613	24	2.5	24	94	0	111	56	11	3	28	1.51
94554--94613	12	5.1	11	81	15	66	56	11	3	28	1.51

Tables:   1

The End!