genome.fa.s1453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001453.1 Hibiscus syriacus cultivar Beakdansim tig00002806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93750

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917--1069	30	5.0	30	76	5	135	18	12	7	61	1.53
917--992	33	2.4	32	84	6	93	15	13	3	67	1.38
4334--4490	64	2.5	63	78	7	154	33	18	24	24	1.97
4896--4946	20	2.4	21	81	15	61	50	0	15	33	1.44
5334--5395	24	2.6	24	89	2	99	17	25	27	29	1.98
8830--8933	45	2.3	45	100	0	208	38	20	19	22	1.94
8874--9017	64	2.3	63	81	7	173	33	19	22	24	1.97
12578--12743	21	8.4	20	71	9	74	30	24	15	30	1.96
12637--12683	21	2.2	21	92	0	85	21	25	17	36	1.94
12574--12728	20	7.8	21	73	8	92	30	24	16	28	1.96
13636--13689	24	2.2	24	90	0	81	20	16	20	42	1.89
16249--16337	20	4.4	20	81	0	115	43	21	17	16	1.88
16348--16486	20	7.2	20	72	9	78	22	20	18	38	1.94
16430--16491	20	3.1	20	92	0	106	19	24	16	40	1.91
16974--17025	23	2.2	24	82	3	61	36	3	13	46	1.62
17320--17408	39	2.3	39	92	0	151	47	19	13	20	1.82
17714--17803	14	6.4	14	80	3	74	53	17	0	28	1.44
17714--17803	43	2.1	41	87	4	126	53	17	0	28	1.44
21513--21557	14	3.2	14	80	0	63	11	8	33	46	1.70
21807--21849	22	2.0	22	90	0	68	30	13	32	23	1.93
21969--22144	20	8.8	20	74	13	123	25	15	24	34	1.95
23908--23952	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24533--24567	18	1.9	18	88	11	54	54	5	20	20	1.64
24623--24666	22	2.0	22	86	4	63	45	0	22	31	1.53
24890--24928	2	19.5	2	100	0	78	51	0	0	48	1.00
25455--25758	149	2.0	149	98	0	590	27	17	20	34	1.95
25737--25781	23	2.0	23	86	0	63	20	24	28	26	1.99
27377--27568	20	9.4	20	91	1	240	38	19	20	20	1.94
27772--27826	22	2.5	22	80	11	67	23	41	10	23	1.86
28209--28263	20	2.8	20	85	0	74	12	16	21	49	1.79
28228--28272	20	2.2	20	80	0	54	17	13	17	51	1.77
30148--30310	20	8.8	20	75	17	129	43	20	18	17	1.88
30430--30476	20	2.3	20	88	0	67	23	17	27	31	1.96
30463--30576	20	5.6	19	79	8	111	21	20	20	37	1.94
30450--30576	40	3.2	38	77	13	130	22	19	21	37	1.95
31172--31225	2	27.0	2	100	0	108	50	0	0	50	1.00
32491--32617	30	4.4	30	66	16	88	41	17	4	36	1.70
37798--37882	43	2.0	44	90	2	136	27	8	17	47	1.76
45740--45814	35	2.1	35	90	0	114	30	6	20	42	1.77
46354--46382	14	2.0	15	93	6	51	51	0	0	48	1.00
50982--51016	2	17.5	2	100	0	70	48	0	0	51	1.00
50981--51038	12	5.4	11	84	11	68	48	0	0	51	1.00
53228--53257	13	2.2	14	94	5	53	20	26	13	40	1.89
56303--56373	2	36.5	2	94	5	128	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56068--56328	127	2.1	125	87	8	370	35	11	6	46	1.67
68633--68729	48	2.0	48	95	0	176	32	26	13	26	1.93
70182--70238	14	4.2	13	75	14	53	50	0	1	47	1.11
70164--70238	13	5.8	13	72	18	59	50	0	2	46	1.15
70190--70245	19	2.8	20	73	26	55	55	0	1	42	1.10
70225--70408	31	5.7	31	73	17	126	49	3	4	41	1.42
70229--70409	65	2.7	65	79	15	201	49	3	4	41	1.43
70420--70472	21	2.5	21	87	0	79	47	5	7	39	1.56
70534--70653	2	59.0	2	75	15	95	44	3	5	47	1.41
70534--70682	37	4.0	37	76	10	133	42	4	6	46	1.51
70534--70640	51	2.1	49	83	8	126	43	3	4	47	1.41
70515--70653	75	1.9	75	86	6	201	43	3	5	47	1.44
70809--70855	2	23.0	2	95	4	85	48	0	2	48	1.13
70857--70930	37	2.1	36	87	5	105	40	10	8	40	1.70
81592--81639	13	3.5	13	82	5	60	37	4	10	47	1.57
81621--81776	71	2.2	68	87	8	217	48	4	5	42	1.45
81680--81844	24	7.1	23	75	14	99	49	1	2	46	1.25
81720--81844	14	8.9	14	83	15	97	49	0	1	48	1.16
81744--81844	2	52.5	2	86	11	149	49	0	0	49	1.07
82126--82238	56	2.0	56	100	0	226	23	6	10	60	1.52
82141--82264	56	2.2	56	89	2	187	27	5	7	59	1.47
84770--84828	29	2.0	30	83	9	77	20	18	3	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86944--86988	20	2.2	21	96	4	83	60	0	11	28	1.31
92587--92644	20	2.8	20	81	5	71	50	1	5	43	1.35

Tables:   1

The End!