genome.fa.s1454.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001454.1 Hibiscus syriacus cultivar Beakdansim tig00002807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120243

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13315--13351	19	2.0	19	89	5	58	35	37	13	13	1.84
26155--26631	51	9.0	51	86	7	494	27	27	16	28	1.97
26155--26618	106	4.4	106	86	7	514	27	26	17	28	1.97
34972--35012	17	2.4	17	91	0	73	17	7	53	21	1.67
46940--47059	40	3.0	40	88	2	170	39	6	17	36	1.76
50988--51045	30	1.9	30	89	0	89	56	8	3	31	1.46
56614--56796	75	2.4	75	91	1	287	42	12	13	32	1.80
56703--56894	98	2.0	98	85	6	264	40	14	10	34	1.80
56794--56969	75	2.3	75	85	0	226	40	9	13	36	1.78
56635--57008	173	2.2	173	87	2	520	39	11	13	36	1.80
58017--58083	26	2.7	25	80	8	66	17	4	2	74	1.11
58030--58084	26	2.2	26	86	3	76	18	3	3	74	1.11
61965--63348	106	13.2	106	91	2	2121	33	25	18	22	1.97
61965--63348	528	2.6	526	91	1	2201	33	25	18	22	1.97
65040--65189	25	5.9	25	69	20	71	24	3	4	68	1.22
65900--66183	153	1.9	153	90	1	453	42	10	9	38	1.71
66350--66645	108	2.7	107	82	6	337	35	13	11	39	1.82
66497--66951	226	2.0	226	87	2	655	32	13	12	41	1.82
68607--68816	65	3.3	63	80	11	212	30	23	19	26	1.98
68788--68836	19	2.6	19	84	9	57	24	28	20	26	1.99
74234--74277	21	2.1	21	83	8	54	9	40	13	36	1.76
74864--74893	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75440--75488	19	2.6	19	84	9	57	24	26	22	26	2.00
88498--88596	34	2.9	33	83	4	99	47	22	6	24	1.73
94282--94338	24	2.3	24	82	11	71	56	0	1	42	1.10
101350--101408	27	2.2	27	100	0	118	42	3	11	42	1.58
109839--109881	7	6.1	7	100	0	86	58	0	41	0	0.98
112951--113090	70	2.0	70	94	2	246	37	11	26	24	1.89
116630--116704	23	3.5	22	77	15	77	26	25	24	24	2.00

Tables:   1

The End!