Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001455.1 Hibiscus syriacus cultivar Beakdansim tig00002810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63574
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:5818 original size:29 final size:29
Alignment explanation
Indices: 5786--5852 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
5776 AATTTTTACC
* *
5786 ATTTATATTTTTGCACTTTAA-TTTCTTTT
1 ATTTACATTTTTGCACTTTAAGTTT-TGTT
* *
5815 ATTTACATTTTTTCCCTTTAAGTTTTGTT
1 ATTTACATTTTTGCACTTTAAGTTTTGTT
5844 ATTTACATT
1 ATTTACATT
5853 CATGCCTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (29 bp):
ATTTACATTTTTGCACTTTAAGTTTTGTT
Found at i:5863 original size:29 final size:29
Alignment explanation
Indices: 5801--5872 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
5791 TATTTTTGCA
* * ** *
5801 CTTTAATTTCTTTTATTTACATTTTTTCC
1 CTTTAATTTATGTTATTTACATTCATGCC
5830 CTTTAAGTTT-TGTTATTTACATTCATGCC
1 CTTTAA-TTTATGTTATTTACATTCATGCC
*
5859 TTTTAATTTATGTT
1 CTTTAATTTATGTT
5873 TTTTTTTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.08
29 30 0.83
30 3 0.08
ACGTcount: A:0.19, C:0.14, G:0.06, T:0.61
Consensus pattern (29 bp):
CTTTAATTTATGTTATTTACATTCATGCC
Found at i:10436 original size:31 final size:33
Alignment explanation
Indices: 10376--10449 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 33
10366 TTCCAACTTA
*
10376 AGGGGACAAAGTATAATTAATCATAAG-AAAT-
1 AGGGGACAAAGTATAATTAACCATAAGAAAATG
10407 AGGGGGACAAAGTATAATTAACCAT-AGAAAATG
1 A-GGGGACAAAGTATAATTAACCATAAGAAAATG
10440 AGGGGACAAA
1 AGGGGACAAA
10450 ATCAAAACAA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
31 3 0.08
32 35 0.90
33 1 0.03
ACGTcount: A:0.50, C:0.08, G:0.24, T:0.18
Consensus pattern (33 bp):
AGGGGACAAAGTATAATTAACCATAAGAAAATG
Found at i:21438 original size:21 final size:22
Alignment explanation
Indices: 21390--21439 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
21380 AAAATTGTAC
* *
21390 AATAATAACAAATCCGGCAGAA
1 AATAATAACAAAACCGACAGAA
*
21412 AA-AATAACAAAACCGATA-AA
1 AATAATAACAAAACCGACAGAA
21432 AATAATAA
1 AATAATAA
21440 TATTTTCGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 4 0.17
21 18 0.75
22 2 0.08
ACGTcount: A:0.64, C:0.14, G:0.08, T:0.14
Consensus pattern (22 bp):
AATAATAACAAAACCGACAGAA
Found at i:25913 original size:21 final size:21
Alignment explanation
Indices: 25884--25930 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
25874 GAAACATGAA
*
25884 CAGTCTCAGTACTGATCCCTC
1 CAGTATCAGTACTGATCCCTC
25905 CAGTATCAGTACTGATCCCTC
1 CAGTATCAGTACTGATCCCTC
25926 CAGTA
1 CAGTA
25931 CCAAAACCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (21 bp):
CAGTATCAGTACTGATCCCTC
Found at i:26600 original size:3 final size:3
Alignment explanation
Indices: 26594--26643 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
26584 TTTTTACTCA
26594 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
26640 TAT T
1 TAT T
26644 TAAAATTACA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:27090 original size:20 final size:19
Alignment explanation
Indices: 27040--27098 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 19
27030 CCCCATCTGC
* *
27040 AAGAAAAAAAGAGGACAGGA
1 AAGAAAAAAAGA-AACAGAA
27060 AA-AAAAAAAGAAACAGAA
1 AAGAAAAAAAGAAACAGAA
*
27078 AAGAAAGAAAAGAAAAAGAA
1 AAGAAA-AAAAGAAACAGAA
27098 A
1 A
27099 GAAGGGAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.21
19 12 0.35
20 15 0.44
ACGTcount: A:0.76, C:0.03, G:0.20, T:0.00
Consensus pattern (19 bp):
AAGAAAAAAAGAAACAGAA
Found at i:27107 original size:15 final size:15
Alignment explanation
Indices: 27060--27101 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
27050 GAGGACAGGA
*
27060 AAAAAAAAAGAAACAG
1 AAAAAGAAAGAAA-AG
27076 -AAAAGAAAGAAAAG
1 AAAAAGAAAGAAAAG
27090 AAAAAGAAAGAA
1 AAAAAGAAAGAA
27102 GGGAAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 2 0.08
15 22 0.92
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:27916 original size:45 final size:43
Alignment explanation
Indices: 27815--27916 Score: 100
Period size: 44 Copynumber: 2.3 Consensus size: 43
27805 GAATTAGGTT
* * *
27815 TTTTAATTTTATTTTTACTATAATTTAGTCATTTATTTTAAATG
1 TTTTAATTTTATTTTAAATATAATTTAGT-ATGTATTTTAAATG
* * *
27859 TTTTCA-TTTATTTTAAATATATCATTCTAGT-TGTATTTTTATTG
1 TTTTAATTTTATTTTAAATATA--ATT-TAGTATGTATTTTAAATG
27903 TTTTAATTTTATTT
1 TTTTAATTTTATTT
27917 GTTTATATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
43 13 0.28
44 20 0.43
45 10 0.21
46 4 0.09
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (43 bp):
TTTTAATTTTATTTTAAATATAATTTAGTATGTATTTTAAATG
Found at i:28718 original size:13 final size:15
Alignment explanation
Indices: 28687--28724 Score: 62
Period size: 13 Copynumber: 2.7 Consensus size: 15
28677 TTATATGTTG
28687 TATTTTATTTGCAAT
1 TATTTTATTTGCAAT
28702 TATTTTATTT-C-AT
1 TATTTTATTTGCAAT
28715 TATTTTATTT
1 TATTTTATTT
28725 TGTCAGAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.52
14 1 0.04
15 10 0.43
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (15 bp):
TATTTTATTTGCAAT
Found at i:39654 original size:18 final size:17
Alignment explanation
Indices: 39598--39660 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
39588 CTTTGAATAC
* *
39598 AATTCTATTTA-TTTCA
1 AATTCAATTTATTTTGA
*
39614 AGTTCAATTTA-TTTGA
1 AATTCAATTTATTTTGA
*
39630 GATTCAATTTATTTTGGA
1 AATTCAATTTATTTT-GA
39648 AATTCAATTTATT
1 AATTCAATTTATT
39661 CTTCTATGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
16 22 0.56
17 3 0.08
18 14 0.36
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (17 bp):
AATTCAATTTATTTTGA
Found at i:40513 original size:82 final size:82
Alignment explanation
Indices: 40366--40766 Score: 748
Period size: 82 Copynumber: 4.9 Consensus size: 82
40356 ATATCCTAGT
* *
40366 CCAAACATTAAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
40431 TGATCTGGTTTGGTAAA
66 TGATCTGGTTTGGTAAA
*
40448 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAGGTGTTCTTTGAGTTATC
1 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
40513 TGATCTGGTTTGGTAAA
66 TGATCTGGTTTGGTAAA
40530 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
40595 TGATCTGGTTTGGTAAA
66 TGATCTGGTTTGGTAAA
40612 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
*
40677 TGATCTGGTTTGGCAGAA
66 TGATCTGGTTTGGTA-AA
*
40695 CCAATCATTGAATTTAGAAGATAAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
1 CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
40760 TGATCTG
66 TGATCTG
40767 ATTCGGTAGG
Statistics
Matches: 312, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
82 239 0.77
83 73 0.23
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (82 bp):
CCAATCATTGAATTTAGAAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATC
TGATCTGGTTTGGTAAA
Found at i:41832 original size:112 final size:112
Alignment explanation
Indices: 41502--42488 Score: 1675
Period size: 112 Copynumber: 8.8 Consensus size: 112
41492 ATTCAAATCT
*
41502 ATCATTTGATGGATTATCTTTT-CCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
1 ATCACTTGATGGATTAT-TTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
* *
41566 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATTTGGATTC
65 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
* * *
41614 ATCAAATTGATGGATTAGCTTTT-CCAGAGAAGGTTCATAATGAGAAGAACTCATCATCTGAAGG
1 ATC-ACTTGATGGATTA-TTTTTGCCAGAGAA-GTTCATAATGAGAAGAA--C-TCATCTGAAGA
41678 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
60 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
41731 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
41796 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
66 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
41843 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
*
41908 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTCTGAATTC
66 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
41955 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
42020 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
66 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
42067 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
*
42132 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTCTGAATTC
66 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
42179 ATCACTTGATGGATTA--TTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
1 ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
*
42242 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTCTGAATTC
66 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
42289 ATCACTTGATGGATTATTTTTGCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
1 ATCACTTGATGGATTATTTTTGCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
*
42354 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT-TGCTCAA-TC
65 GAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAT-CTGAATTC
* * * * *
42401 TATTACTTTATGGGTTATTTTT-TCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGA
1 -ATCACTTGATGGATTATTTTTGCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
42465 AG-AGAAAGTTCATAATGAGAAGAA
64 AGAAG-AAGTTCATAATGAGAAGAA
42489 CTCATCAAAA
Statistics
Matches: 845, Mismatches: 17, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
110 110 0.13
111 2 0.00
112 489 0.58
113 121 0.14
114 17 0.02
115 21 0.02
116 21 0.02
117 64 0.08
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (112 bp):
ATCACTTGATGGATTATTTTTGCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTATCTGAATTC
Found at i:42746 original size:3 final size:3
Alignment explanation
Indices: 42740--42784 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
42730 TTTTTACTCA
*
42740 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
42785 TAAAATTACA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:43268 original size:15 final size:15
Alignment explanation
Indices: 43221--43262 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
43211 AGGATAGGGA
*
43221 AAAAAAAAAGAAACAG
1 AAAAAGAAAGAAA-AG
43237 -AAAAGAAAGAAAAG
1 AAAAAGAAAGAAAAG
43251 AAAAAGAAAGAA
1 AAAAAGAAAGAA
43263 GGGAAACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 2 0.08
15 22 0.92
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAGAAAAG
Found at i:45169 original size:18 final size:19
Alignment explanation
Indices: 45134--45170 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
45124 CACAGAATGT
45134 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
45154 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
45171 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:45991 original size:20 final size:20
Alignment explanation
Indices: 45959--45996 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45949 TTTCATATAT
45959 TTTATTTTATAAACCATAAA
1 TTTATTTTATAAACCATAAA
*
45979 TTTATATTT-TAAAGCATA
1 TTTAT-TTTATAAACCATA
45997 TTTTTTATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTATTTTATAAACCATAAA
Found at i:46905 original size:15 final size:14
Alignment explanation
Indices: 46876--46915 Score: 71
Period size: 15 Copynumber: 2.8 Consensus size: 14
46866 TAATTAAATT
46876 AATATTTTATTTTA
1 AATATTTTATTTTA
46890 AATATTTTACTTTTA
1 AATATTTTA-TTTTA
46905 AATATTTTATT
1 AATATTTTATT
46916 AATTTATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
AATATTTTATTTTA
Found at i:47563 original size:38 final size:36
Alignment explanation
Indices: 47487--47563 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
47477 TTTTTATATT
*
47487 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
47523 TTTAATTTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAA-TTTTGTAAA-AAAATTATATAAATATTAT-CAA
47561 TTT
1 TTT
47564 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 5 0.14
37 21 0.60
38 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:56308 original size:29 final size:29
Alignment explanation
Indices: 56265--56347 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
56255 CTCACCTAAC
56265 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
56295 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
56324 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
56348 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:61050 original size:28 final size:28
Alignment explanation
Indices: 61009--61089 Score: 101
Period size: 28 Copynumber: 2.8 Consensus size: 28
60999 CTCACCTAAC
61009 TAAATTGATGTAAGCATGACATCATTAAT
1 TAAA-TGATGTAAGCATGACATCATTAAT
* *
61038 TAAATGATGTAAGCAATGGCATCTTTAAT
1 TAAATGATGTAAGC-ATGACATCATTAAT
*
61067 T-AATGATGTAAGTAATGACATCA
1 TAAATGATGTAAG-CATGACATCA
61090 ATTTAGTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
28 28 0.62
29 17 0.38
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (28 bp):
TAAATGATGTAAGCATGACATCATTAAT
Done.