genome.fa.s1456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001456.1 Hibiscus syriacus cultivar Beakdansim tig00002811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136018

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66--94	15	2.0	15	93	6	51	68	0	3	27	1.05
3694--3729	2	18.0	2	100	0	72	50	0	0	50	1.00
5806--5858	15	3.0	18	70	30	51	15	5	15	64	1.47
5806--5870	35	1.9	33	87	6	94	13	4	16	64	1.44
13104--13393	158	1.8	156	88	4	440	28	18	5	47	1.70
13301--13539	120	2.0	121	90	1	383	30	20	7	42	1.79
23410--23457	17	2.8	17	83	0	60	39	2	10	47	1.49
25697--25740	19	2.2	20	84	8	54	31	0	13	54	1.39
26240--26277	20	1.9	20	94	0	67	31	31	15	21	1.94
26324--26403	37	2.2	36	82	10	99	32	18	18	30	1.95
26352--26406	19	2.9	19	68	21	53	34	18	14	32	1.91
26355--26419	18	3.6	18	69	20	55	30	20	16	32	1.95
27444--27492	19	2.6	18	84	9	71	22	2	2	73	1.04
27614--27656	22	2.0	21	82	17	52	46	6	9	37	1.63
43439--43479	18	2.2	19	86	4	57	41	4	21	31	1.74
47140--47224	28	3.0	28	80	3	98	35	23	8	32	1.85
49884--49929	24	1.9	24	90	0	74	52	4	21	21	1.64
53941--54074	59	2.3	59	82	8	157	40	17	0	42	1.49
57127--57168	20	2.1	20	90	0	66	11	23	33	30	1.91
58353--58381	7	4.1	7	100	0	58	44	0	0	55	0.99
62057--62081	6	4.2	6	100	0	50	68	0	0	32	0.90
62199--62270	31	2.3	32	80	7	85	33	15	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62258--62438	92	2.0	92	83	4	231	29	22	9	38	1.85
70142--70347	108	1.9	108	87	0	304	23	16	43	16	1.87
74090--74337	84	2.9	84	83	2	264	22	20	24	33	1.97
74336--74441	36	2.9	35	91	2	158	36	13	22	27	1.91
74565--75550	106	9.4	106	89	4	1426	23	18	24	33	1.97
79087--79112	13	2.0	13	100	0	52	69	0	0	30	0.89
80375--80433	27	2.0	28	84	12	75	47	0	8	44	1.33
84148--84182	18	1.9	18	100	0	70	34	5	2	57	1.37
86455--86499	22	2.0	22	87	8	65	22	13	28	35	1.92
86464--86505	22	1.9	22	85	0	57	21	16	28	33	1.95
92626--92673	20	2.3	22	78	7	55	39	0	2	58	1.10
103208--103604	159	2.5	159	84	4	507	28	16	6	48	1.70
103850--103879	3	10.0	3	100	0	60	33	0	0	66	0.92
105299--105351	26	2.0	26	92	0	88	11	43	26	18	1.84
110745--110838	2	47.0	2	100	0	188	50	0	0	50	1.00
114587--114648	28	2.2	28	85	5	81	37	38	4	19	1.73
123297--123345	21	2.3	21	89	0	80	6	32	40	20	1.77
123517--123550	14	2.4	14	100	0	68	64	0	0	35	0.94
123776--123820	19	2.4	19	80	0	54	35	28	11	24	1.90
123860--124087	20	11.4	20	82	9	209	41	24	14	19	1.89
123839--124087	100	2.5	100	85	2	331	40	24	14	20	1.90
123872--124073	60	3.3	62	79	8	238	42	24	14	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124039--124106	18	3.5	19	82	8	66	30	23	16	29	1.96
124233--124271	16	2.5	15	84	8	51	28	5	0	66	1.12
124867--124900	12	2.8	12	90	0	50	55	29	0	14	1.40
125026--125079	24	2.2	24	93	0	90	24	18	16	40	1.90
127342--127377	18	2.0	18	94	0	63	55	25	2	16	1.55
127702--127747	20	2.3	20	92	0	74	39	21	21	17	1.93
127905--128080	66	2.6	65	89	8	257	52	17	2	27	1.56
129430--129528	21	4.7	21	75	8	94	22	19	34	24	1.96
129430--129532	42	2.5	42	80	6	127	22	18	34	24	1.96
129672--129717	4	11.5	4	80	0	56	67	4	2	26	1.21
129919--129968	21	2.4	21	82	0	64	36	30	14	20	1.91
131660--131727	20	3.4	20	91	4	102	50	22	16	11	1.77
131740--131779	20	2.0	20	85	0	53	15	12	22	50	1.77
132275--132457	20	9.1	20	81	1	186	18	14	23	43	1.87
132359--132414	21	2.7	21	83	2	69	23	7	25	44	1.78
132281--132454	81	2.2	80	87	3	242	19	13	24	42	1.87
132281--132468	40	4.7	39	81	6	205	18	14	24	42	1.88
132281--132468	101	1.9	101	87	0	277	18	14	24	42	1.88
132462--132509	20	2.4	20	92	0	78	20	18	22	37	1.94
134513--134593	36	2.2	36	100	0	162	13	40	2	43	1.57
134828--134918	12	7.8	12	80	9	91	34	31	5	28	1.80

Tables:   1

The End!