genome.fa.s1457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001457.1 Hibiscus syriacus cultivar Beakdansim tig00002812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70333

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5050--5093	14	3.1	14	86	0	52	43	4	13	38	1.65
8199--8272	22	3.3	22	70	17	71	17	8	4	70	1.28
8208--8279	23	3.2	23	70	21	71	16	8	4	70	1.27
8208--8306	45	2.4	39	81	13	101	18	6	5	70	1.26
10345--10411	22	3.0	22	95	2	116	25	28	26	19	1.99
12095--12139	21	2.1	21	87	0	63	15	24	28	31	1.96
15404--16497	106	10.6	105	88	4	1509	33	24	18	23	1.97
15404--16497	211	5.3	210	90	4	1509	33	24	18	23	1.97
18723--18796	21	3.4	22	70	18	64	20	6	4	68	1.29
18716--18812	44	2.2	44	87	9	135	21	7	4	67	1.33
18733--18831	44	2.3	43	87	5	144	19	6	5	69	1.28
21228--21264	7	5.3	7	93	0	65	62	27	0	10	1.28
21219--21264	14	3.2	14	90	3	65	58	28	0	13	1.35
24699--24756	24	2.4	24	88	0	80	17	3	25	53	1.59
24949--25027	31	2.5	31	91	0	131	32	15	22	29	1.95
31481--31701	50	4.5	49	93	3	358	42	5	3	48	1.42
35440--35484	18	2.5	18	85	0	63	40	15	24	20	1.91
36209--36247	20	2.0	19	85	5	51	51	0	2	46	1.14
46266--46463	84	2.4	83	80	11	194	66	1	6	26	1.24
47022--47118	37	2.6	37	85	0	131	31	11	15	41	1.83
47163--48854	164	10.2	164	85	3	1907	24	19	25	31	1.98
47143--48854	249	6.9	246	84	4	1673	24	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47139--48854	825	2.1	826	94	0	3042	24	19	25	31	1.98
55228--55257	16	1.9	15	93	6	51	10	20	43	26	1.83
55473--55727	72	3.5	72	73	14	222	44	4	3	47	1.39
55473--55760	35	7.9	36	77	11	216	44	5	3	46	1.43
55594--55727	38	3.5	40	82	10	142	43	2	2	50	1.32
55773--55799	2	13.5	2	100	0	54	48	0	0	51	1.00
55549--55784	109	2.2	107	77	10	237	43	5	4	46	1.47
61057--61398	123	2.8	121	85	4	479	26	16	16	40	1.89
62298--62412	36	3.2	36	73	7	133	29	15	13	40	1.86
62269--62466	73	2.7	73	94	0	342	32	15	11	39	1.84
62269--62447	37	4.9	36	68	8	119	32	16	12	39	1.85
62487--62683	73	2.7	73	95	0	349	41	13	15	29	1.85
62521--62683	36	4.5	35	69	11	105	38	14	15	31	1.88
62488--62673	37	5.1	37	69	12	159	41	12	16	29	1.85
63412--63447	2	18.0	2	94	0	63	47	0	0	52	1.00
64865--64905	19	2.2	19	100	0	82	24	9	31	34	1.88
64865--64921	19	3.0	19	89	5	71	24	12	31	31	1.92
64894--65113	64	3.5	63	83	5	241	33	19	18	28	1.96
64938--65113	63	2.8	63	83	9	223	34	20	18	26	1.96
65854--66071	103	2.1	103	95	1	393	26	13	22	36	1.92
66088--66150	23	2.7	23	92	0	99	19	28	26	25	1.98

Tables:   1

The End!