Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001459.1 Hibiscus syriacus cultivar Beakdansim tig00002821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118778

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4648--5039
54
7.4
54
86
4
550
31
19
18
30
1.96
4649--5039
105
3.7
105
86
4
561
31
19
18
30
1.96
9579--9616
19
2.0
19
100
0
76
26
15
31
26
1.96
13834--14066
46
5.1
46
90
0
358
44
9
19
26
1.80
19233--19761
55
9.7
55
87
1
643
34
18
18
28
1.94
20034--20158
45
2.8
45
95
0
223
45
6
24
24
1.76
21645--21688
23
2.0
21
86
8
61
43
6
0
50
1.29
21648--21688
21
2.0
21
85
9
57
41
7
0
51
1.30
22184--22241
13
4.5
13
76
4
64
22
17
0
60
1.36
22184--22240
19
3.0
19
76
7
62
21
17
0
61
1.35
22182--22241
25
2.3
26
88
8
88
23
18
0
58
1.39
22272--22391
19
6.6
19
75
12
81
37
16
2
43
1.62
22324--22353
14
2.1
14
100
0
60
43
13
0
43
1.43
22338--22392
19
2.9
19
91
0
92
34
12
5
47
1.65
26794--26864
35
2.0
36
94
2
126
33
15
15
35
1.89
44388--44440
18
2.9
18
85
0
79
16
16
33
32
1.92
45752--45814
29
2.3
26
80
15
74
42
6
15
34
1.73
45761--45834
29
2.5
29
86
8
96
44
8
17
29
1.77
51800--51878
35
2.3
35
93
4
133
26
20
12
40
1.88
55344--55412
29
2.3
29
87
7
95
36
1
0
62
1.04
55325--55396
3
24.3
3
78
13
60
31
1
0
66
1.00
56835--56868
17
2.1
17
88
5
52
20
2
5
70
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61973--62010
15
2.5
15
91
4
58
84
0
15
0
0.63
61972--62011
16
2.5
16
87
0
62
85
0
15
0
0.61
67224--67774
113
4.9
113
89
2
810
36
15
19
28
1.92
67926--67986
20
3.2
19
66
15
54
45
11
16
26
1.81
68122--68160
16
2.7
14
88
11
53
28
0
0
71
0.86
68125--68160
13
2.8
13
88
12
56
27
0
0
72
0.85
68141--68208
29
2.3
29
87
7
93
36
1
0
61
1.05
68121--68192
3
24.3
3
76
18
62
33
1
0
65
1.02
69569--69598
10
3.0
10
95
0
51
23
0
0
76
0.78
69639--69667
14
2.1
14
100
0
58
20
0
6
72
1.07
71866--71899
16
2.1
16
100
0
68
41
0
20
38
1.53
72650--72687
14
2.6
15
87
4
51
57
10
21
10
1.61
87006--87130
48
2.5
50
84
3
164
26
16
18
39
1.91
88574--88623
20
2.5
20
100
0
100
34
32
16
18
1.92
101763--101802
22
2.0
21
85
14
57
62
7
5
25
1.42
105810--105869
26
2.3
26
86
11
79
56
5
8
30
1.50
111134--111293
65
2.5
63
85
8
198
31
21
18
28
1.97

Tables:   1

The End!