Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000146.1 Hibiscus syriacus cultivar Beakdansim tig00000261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68311

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3879--3928
26
1.9
26
88
8
75
14
10
10
66
1.46
3876--3931
12
4.6
12
75
18
53
14
8
8
67
1.40
9287--9328
22
2.0
22
86
9
61
26
30
0
42
1.55
9878--9929
21
2.5
21
90
6
79
46
3
11
38
1.59
12829--13071
128
1.9
132
84
5
332
34
15
12
37
1.85
12981--13188
112
1.9
112
89
0
326
34
15
11
38
1.83
13915--13979
26
2.5
26
87
0
94
36
4
16
41
1.70
20443--20505
25
2.4
27
78
5
67
31
15
7
44
1.76
20596--20634
17
2.4
17
91
4
62
53
2
0
43
1.14
21368--21719
178
2.0
178
94
0
614
51
11
8
27
1.68
22129--22225
29
3.4
29
75
12
92
35
11
22
30
1.90
25888--25915
2
14.0
2
100
0
56
50
0
0
50
1.00
25959--26037
31
2.5
31
81
6
79
40
18
3
36
1.69
32505--32545
19
2.2
19
86
0
55
17
2
26
53
1.56
33687--33729
15
2.7
15
82
7
50
32
11
20
34
1.89
39898--39942
22
2.1
21
91
4
72
42
20
4
33
1.72
39902--39949
22
2.2
22
85
7
62
45
20
4
29
1.70
45293--45319
14
1.9
14
100
0
54
14
0
22
62
1.31
45807--45839
16
2.0
17
88
5
50
39
0
0
60
0.97
46605--46668
22
3.0
22
76
13
62
59
1
3
35
1.23
52725--52756
16
2.0
16
93
0
55
46
28
12
12
1.78
52908--52971
31
2.1
31
93
0
110
50
10
10
28
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54556--54652
42
2.3
42
98
0
185
36
23
18
21
1.95
54509--54658
21
7.2
21
68
17
89
35
23
20
21
1.96
55239--55296
12
5.3
11
95
4
84
0
17
55
27
1.42
55236--55292
5
10.6
5
98
1
78
0
19
54
26
1.44
57078--57137
21
2.9
21
94
0
102
26
30
20
23
1.98
57146--57220
21
3.6
21
90
0
114
22
21
25
30
1.99
57388--57461
19
3.9
19
77
7
60
41
2
2
52
1.29
57389--57445
30
1.9
30
89
7
89
43
1
0
54
1.10
57736--57816
38
2.1
38
83
0
99
35
27
17
19
1.94
58863--59277
187
2.2
186
83
4
507
39
10
16
33
1.82

Tables:   1

The End!