genome.fa.s1464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001464.1 Hibiscus syriacus cultivar Beakdansim tig00002828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60739

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1220--1276	13	4.5	13	73	8	55	36	14	21	28	1.92
2426--2472	24	2.0	24	86	0	67	23	23	19	34	1.97
2443--2488	24	1.9	24	82	8	58	32	19	15	32	1.93
4210--4319	35	3.1	35	90	1	175	32	3	37	26	1.74
10935--10982	21	2.3	21	77	0	51	25	31	22	20	1.98
14189--14317	43	3.0	44	84	8	185	24	5	17	52	1.65
14185--14317	42	3.2	42	84	9	182	24	5	17	53	1.64
22790--22850	20	2.9	20	82	7	68	18	24	32	24	1.97
33931--34311	191	2.0	187	93	6	653	44	5	20	28	1.73
41330--41435	3	35.3	3	87	11	119	41	0	0	58	0.98
41304--41435	63	2.1	63	95	2	239	43	0	0	56	0.99
45059--45112	14	3.8	14	80	4	54	24	12	9	53	1.68
45074--45112	15	2.7	15	88	4	53	20	15	12	51	1.76
48693--48753	19	3.0	21	79	13	65	83	0	16	0	0.64
48693--48755	11	5.7	11	88	0	81	84	0	15	0	0.63
48704--48757	10	5.4	10	82	14	67	81	0	18	0	0.69
53456--53529	22	3.4	22	98	0	139	35	9	14	40	1.79
53936--54608	341	2.0	339	89	1	1024	38	14	19	28	1.91
53929--54608	113	6.0	113	90	1	984	38	14	18	28	1.91
54523--54751	120	1.9	119	86	9	329	38	15	20	24	1.92
54652--54710	17	3.4	17	70	25	59	49	11	23	15	1.77
54956--55016	3	19.0	3	96	3	86	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59097--59148	20	2.6	20	78	9	61	32	26	9	30	1.89

Tables:   1

The End!