Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 55
Found at i:1314 original size:4 final size:4
Alignment explanation
Indices: 1305--1872 Score: 1018
Period size: 4 Copynumber: 145.0 Consensus size: 4
1295 TTAGACCATT
1305 GTGC GTGC GTGC GTTGC GTGC GT-- GTGC GTG- GTGC GTGC --GC GTGC
1 GTGC GTGC GTGC G-TGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1349 GTG- GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1396 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GT-C GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1443 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1491 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GT-- GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1537 GTGC GTGC GTGC --GC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1583 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
* *
1631 GTGC GTGC GTG- GTGC GTGC GTGC GTGT GTGC GTGC GTGC GGGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1678 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1726 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1774 GTGC GTGC GTGC GTG- GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1821 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1 GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC GTGC
1869 GTGC
1 GTGC
1873 AGAAACCATG
Statistics
Matches: 546, Mismatches: 4, Indels: 28
0.94 0.01 0.05
Matches are distributed among these distances:
2 8 0.01
3 15 0.03
4 519 0.95
5 4 0.01
ACGTcount: A:0.00, C:0.24, G:0.50, T:0.25
Consensus pattern (4 bp):
GTGC
Found at i:2163 original size:4 final size:4
Alignment explanation
Indices: 2154--10834 Score: 14882
Period size: 4 Copynumber: 2215.0 Consensus size: 4
2144 ATCCATTTCC
2154 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2202 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2250 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
2298 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTCT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2346 GTAT G-AT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2392 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
2440 GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAG GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2486 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2533 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2580 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2628 GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
2675 GTAT GTAT GTAT GTAT GTAT GTAT GTAGT ATAT GT-T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT
2723 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT
*
2772 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2820 GTAT GTAT GTAT GTA- GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2865 GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2912 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
2958 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3005 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3051 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3098 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3144 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- -TAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3190 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3238 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
3286 GTAT GTAT GTAG GTAT GTAT GTAT GTA- -TAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3332 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3380 GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3426 GTAT GTAT GTA- GTAT GTAT GTAT GTA- GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3471 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3519 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTATT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT
3568 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3616 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3663 GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
3709 GTAG GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- G-AT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3755 GTAT GTAT GTA- GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3801 GTAT GT-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3848 GTAT GTAT GTAT GTAT GTAT GT-T GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3895 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3943 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-AT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
3990 GTAT G--T GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTA- GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4033 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4081 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
4129 GTAAT GTAT GTAT GTAT GTAT GTAT GTAGT ATAT GTAT GTCT GTAT GTAT
1 GT-AT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT
4179 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT
4228 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4276 GTAAT GTAT GTAT GTAT GTAT -TAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4324 GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4369 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -TAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4416 GTAT GTAT GTAT GTAT GTAT GTAAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GT-AT GTAT GTAT GTAT GTAT GTAT GTAT
4465 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4513 GTAT GTAT GTAT GTAT GTATT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
4561 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GGAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4609 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4657 GTAT GTATT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- -TAT
1 GTAT GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4704 GTAT GTAT GTAT GTAT GTAAT GT-T GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4752 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTA- GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4798 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4845 -TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4892 GTAT GTAT GTAT GTATT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4939 GTATT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
4988 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
5035 GTAG GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GGAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5083 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-AT GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5129 GTAT -TAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5173 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5221 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5269 GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GGTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT GTAT GTAT
*
5316 GT-T GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTGT AGTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT
*
5363 GTAT GTAT GTCT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
5411 GTAT GTAT GTAT GTAT GTAT GTCT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5459 GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5505 G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5551 GTAT GTAT GTAT GTAT GTAT GTAT GTAT -TAT GTAT GTAT GTAT G--T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5596 GTAT G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5641 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-AT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5688 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT-T -TAT GTA- GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5733 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5781 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5829 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
5877 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTGT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
5925 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
5971 GTAT GTA- -TAT ATAT GTAT GTAT GTAT GTA- -TAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6015 GTAT GTAT GTAT G--T GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6059 GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6104 GTAT GTAT GTAT GTAT GTAT G-AT GTATT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT
*
6152 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAG GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6200 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6248 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6296 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
6344 GTCT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6391 GTAT GTAT GTAT GTAT GTAT GTAT -TAT GTAT GTAT GTAT GTA- -TAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6436 GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6480 GTTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
6527 GGAT -TAT GTAT GTAT GGTAAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-
1 GTAT GTAT GTAT GTAT -GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6575 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6622 G--T GTAT GTA- -TAT GTAT GTAT GTAT GTAT GTAT GTAT AGTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT GTAT
* *
6667 GTAT GTAT GTAT GTAT GTGT ATAT -TAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
6714 GTAT GTAT GTAT GTAT GTA- GTAT GTAT TTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6761 GGTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6810 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6857 GTAT GT-T GTAT GGTAT G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
6904 GTAT GTAT TTAT GTAT GTAT GTAT GTAT GTA- GTAT GTCT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6951 GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
6997 GTAT GTAT GTAAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAG
1 GTAT GTAT GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7046 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
7094 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GGTAT GTAT GTAT GTCT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT GTAT GTAT GTAT
7143 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GT-T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
7188 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAG GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7236 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7282 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
7330 GTAT GTAT GTAT GTAT GTAT GTAT GTCT GTAT GTAT GTAT GTAT GTTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT
7379 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7427 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7475 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7523 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7570 GTAT GTAT GTAT GTAT GTATT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7619 GTAT GTTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
7668 GTAG GTAT GTAT GTAT GT-T -TAT GTA- GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7713 GTAT GTAT GTAT GTAT GTAT GT-T GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7760 GTAT GTAT GTAT GTAT G--T GTAT GTA- GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7805 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
7852 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTTCT GTAT GTAT GGTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT GTAT -GTAT GTAT
*
7902 ATAT GTAT -TAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7948 GTAT GTA- -TAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7993 GTAT GTAT GTAT GTAT GTAT G-AT GTAT GTAT GT-T GTAT GTAT GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8038 GTAT GTAT GTAT GTAT GTAT -TAT GTAT GTAT GTAT GTA- -TAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8083 GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT -TAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8128 GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8175 GTAT GTAT -TAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT
8222 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTTAT GTA- GT-T GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT GTAT GTAT
8268 GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT GTAT
8316 GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTA- GTAT GTAT GTAT GT-T
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8361 GTAT GTAT GTAT G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8408 GTA- GTAT GT-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
8454 GTAT GTAT GTA- GTAT GTAT GTAT GTAT G-AT GTAT GTAT GTCT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8500 GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8547 GTAT GTAT GTA- GTAT GTAT GTAT GTAT GGTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT GTAT GTAT GTAT GTAT
8595 GTAT G-AT GTAT GTAT GTAT GTAT GTAT GT-T GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
8641 GTAT GTAT GTAT ATGT ATAT GTAT GT-T AGTAT GTAT GTA- GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT GTAT GTAT GTAT GTAT
8688 GTAT GTAT GT-T GT-T GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8732 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8780 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8828 -TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
8875 GTAT GTAT GTAT GTAT GT-T GTAT GTAT GTAT G--T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
8920 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTCT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
8968 GTAT GTAT GTA- -TAT GGTAT GTAT GTAT GTAT GTAT GTAT GTAG GTAT
1 GTAT GTAT GTAT GTAT -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
9015 GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAG GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9062 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTATT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT GTAT
*
9110 GTAT GTAT GTAT GTTATT GTAT GTAT GTCT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT G-TA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9160 GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
9207 GTCT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
9255 GGTA- GTAT GTAT GTAT GTAT GTAT GT-T GTAT GTAT G--T GTCT GTAT
1 -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9300 GTAT G--T GTAT GTAT GTAT G--T GTAT GTAT G--T GTAT GTAT GGTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT -GTAT
*
9343 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTCT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9391 GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
9437 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTCT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9485 GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G-TAT GTAT GTAT
9533 GTAT G-AT GT-T GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTA- GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9577 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9625 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9672 GTATT GTA- GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT
1 GTA-T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9719 GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT G-AT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9765 GTAT GTA- GTAT GTAT GTAT GTAT GT-T GTAT GTAGT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA-T GTAT GTAT GTAT
9812 GTA- GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
9859 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
9907 GTAT GTAT GTAT GTAT GTCT GTAT GTAT GT-T GTAT GTGT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* *
9954 GTAT GTAT GTAT GTAT GTAT GTAT GTCT GTAT GTAT GTAG GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
10002 GTCT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10050 GTAT GTAT G--T GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10094 GTTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT GTAT
1 G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10142 GTAT GTAT GTAGGT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTA--T GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10192 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
10240 GTAT GTAT GGAT GTAT GTAT GTAT GTAT GTAT G-AT GTAT GTAT G-AT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10286 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--T GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10332 GTAT GTAT GGTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10381 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10429 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10476 GGTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT-T GTAT GTAT GTAT
1 -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10524 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10572 GTAT GTAT G-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
10619 GTAT GTA- GTAT GTAT GTAT GTA- GT-T GTAT GTCT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
*
10664 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAG GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10712 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA- GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10759 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10807 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
10835 TTTAAAAATG
Statistics
Matches: 8307, Mismatches: 96, Indels: 548
0.93 0.01 0.06
Matches are distributed among these distances:
2 103 0.01
3 362 0.04
4 7669 0.92
5 165 0.02
6 8 0.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:27836 original size:138 final size:137
Alignment explanation
Indices: 27534--28212 Score: 823
Period size: 138 Copynumber: 4.9 Consensus size: 137
27524 ATGTTGATAG
* *
27534 GTGTTGTTGATTCAACTCCATATGTGAAGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATG
1 GTGTTGCTGATTCAACT-CATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATG
* *
27599 AACTTTTTTCCCTCATCAGATGAGTTATTCTCATTATGAACTCTCCATTGGAAATGTTGATCCCT
65 AACTTTTTTCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGATCCCT
* *
27664 CGAGTTAG
130 CGAGTGAA
* *** *
27672 GTATCATTGATTCAACTCCATATGTGATGAATCGGGCTAAGGTTGAACAAGTTCTTCTCATTATG
1 GTGTTGCTGATTCAACT-CATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATG
* * * *
27737 AACTTCTTTTTCGTCATCGGGTGAATTCTTCTCATTATGAACTCTCCTATTGGAAATGTTGATCC
65 AACTT-TTTTCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCC-ATTGGAAATGTTGATCC
27802 CTCGAGTGAA
128 CTCGAGTGAA
* * * * *
27812 GTGTTGCTGATT----TGA-AGTGTTG-TGAATCGACCAATAGGTCGAACAAGCTCTTCTCATTA
1 GTGTTGCTGATTCAACTCATA-TG-TGATGAATCGAGCTA-AGGTTGAACAAGTTCTTCTCATTA
* * * *
27871 TGAACTTCTTCTCCCTCTTTCGGATGAGTTTTTCTCATTATGAACTCTCCAATGGAAATGTTGAT
63 TGAACTT-TTTTCCCTC-ATCGGATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAT
*
27936 CCCTCGAGTGAG
126 CCCTCGAGTGAA
* * * *
27948 GTGTTGCTGATTCAACTCCATATATAATGAATCGAGCAAAGGTTGAACAAGTTCTTCTTATTATG
1 GTGTTGCTGATTCAACT-CATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATG
* * * *
28013 AACTTTTCTCCCTCATCGGATGAGTTCTTCTCATTATAAATTCTCCATTGGAAATATTGATCCCT
65 AACTTTTTTCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGATCCCT
*
28078 TGAGT-AA
130 CGAGTGAA
* *
28085 GGTGTTGATGATTCAACTCCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTATCATTAT
1 -GTGTTGCTGATTCAACT-CATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTAT
** * * *
28150 GAACTTTTTCTCCCTCATTAGATTAGTTCTTCTCATTATGAAATCTTCATTGGAAATGTTGAT
64 GAACTTTTT-TCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGAT
28213 TGGTTTACCC
Statistics
Matches: 465, Mismatches: 61, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
134 1 0.00
135 12 0.03
136 76 0.16
137 29 0.06
138 180 0.39
139 90 0.19
140 63 0.14
141 13 0.03
142 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (137 bp):
GTGTTGCTGATTCAACTCATATGTGATGAATCGAGCTAAGGTTGAACAAGTTCTTCTCATTATGA
ACTTTTTTCCCTCATCGGATGAGTTCTTCTCATTATGAACTCTCCATTGGAAATGTTGATCCCTC
GAGTGAA
Found at i:29226 original size:42 final size:42
Alignment explanation
Indices: 29175--29291 Score: 121
Period size: 42 Copynumber: 2.8 Consensus size: 42
29165 CATCTTACTT
* * *
29175 GAAAGACTTA-TAGATGACCCGAAGGATTTAAGCATCATGCTC
1 GAAAGACTTACT-CATGACCCGAAAGACTTAAGCATCATGCTC
* **
29217 GAAAGACTTACTCATGGCCCGAAAGACTTACTCATCATGCTC
1 GAAAGACTTACTCATGACCCGAAAGACTTAAGCATCATGCTC
* * *
29259 GAAAGACTTAC-CAATGTCCCGAATGACTAAAGC
1 GAAAGACTTACTC-ATGACCCGAAAGACTTAAGC
29292 TGATTCGAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (42 bp):
GAAAGACTTACTCATGACCCGAAAGACTTAAGCATCATGCTC
Found at i:29264 original size:22 final size:22
Alignment explanation
Indices: 29207--29269 Score: 94
Period size: 20 Copynumber: 3.0 Consensus size: 22
29197 AGGATTTAAG
29207 CATCATGCTCGAAAGACTTACT
1 CATCATGCTCGAAAGACTTACT
* *
29229 CAT--GGCCCGAAAGACTTACT
1 CATCATGCTCGAAAGACTTACT
29249 CATCATGCTCGAAAGACTTAC
1 CATCATGCTCGAAAGACTTAC
29270 CAATGTCCCG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 18 0.51
22 17 0.49
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (22 bp):
CATCATGCTCGAAAGACTTACT
Found at i:29548 original size:144 final size:144
Alignment explanation
Indices: 29276--29605 Score: 471
Period size: 144 Copynumber: 2.3 Consensus size: 144
29266 TTACCAATGT
* * * * * *
29276 CCCGAATGACTAAAGCTGATTCGAAGTATGTGAATCAAGAAATAGGAAATGTTAACCCCTCTGGT
1 CCCGAAGGACTTAAGCTGATTCGAAGTGTGTGAATCGAGCAATAGGAAATATTAACCCCTCTGGT
* *
29341 GGGGCATTGCTGATTCGAAATATTGTGAATTGATCAAAGGAAATGTTGAAAACACCCTGCCCGAA
66 GGGGCATTGCTGATTCGAAATATTGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAA
29406 GGTCTTATAGATGG
131 GGTCTTATAGATGG
* *
29420 CTCGAAGGACTTAAGCTGATTCGAAGTGTGTGAATTGAGCAATAGGAAATATTAACCCCTCTGGT
1 CCCGAAGGACTTAAGCTGATTCGAAGTGTGTGAATCGAGCAATAGGAAATATTAACCCCTCTGGT
* * * * * * *
29485 GGGGCGTTGTTGATTCGAAGTGTTGTGAATCGAGCAAATGAAATGTTGAAAACATCTTGCCCGAA
66 GGGGCATTGCTGATTCGAAATATTGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAA
*
29550 GGTCTTATGGATGG
131 GGTCTTATAGATGG
* * *
29564 CCCGAAGCATTTAAGCTTATTCGAAGTGTGTGAATCGAGCAA
1 CCCGAAGGACTTAAGCTGATTCGAAGTGTGTGAATCGAGCAA
29606 AGAAAATGTT
Statistics
Matches: 163, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 163 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (144 bp):
CCCGAAGGACTTAAGCTGATTCGAAGTGTGTGAATCGAGCAATAGGAAATATTAACCCCTCTGGT
GGGGCATTGCTGATTCGAAATATTGTGAATCGAGCAAAGGAAATGTTGAAAACACCCTGCCCGAA
GGTCTTATAGATGG
Found at i:29639 original size:84 final size:85
Alignment explanation
Indices: 29497--29653 Score: 273
Period size: 84 Copynumber: 1.9 Consensus size: 85
29487 GGCGTTGTTG
* *
29497 ATTCGAAGTGTTGTGAATCGAGCAAATGAAATGTTGAAAACATCTTGCCCGAAGGTCTTATGGAT
1 ATTCGAAGTGTTGTGAATCGAGCAAATGAAATGTTGAAAACATCCTGCCCGAAGGTCTTATAGAT
29562 GGCCCGAAGCATTTAAGCTT
66 GGCCCGAAGCATTTAAGCTT
29582 ATTCGAAGTG-TGTGAATCGAGCAAA-GAAAATGTTGAAAACATCCTGCCCGAAGGTCTTATAGA
1 ATTCGAAGTGTTGTGAATCGAGCAAATG-AAATGTTGAAAACATCCTGCCCGAAGGTCTTATAGA
29645 TGGCCCGAA
65 TGGCCCGAA
29654 TGACTTATCA
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
83 1 0.01
84 58 0.84
85 10 0.14
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (85 bp):
ATTCGAAGTGTTGTGAATCGAGCAAATGAAATGTTGAAAACATCCTGCCCGAAGGTCTTATAGAT
GGCCCGAAGCATTTAAGCTT
Found at i:29750 original size:42 final size:41
Alignment explanation
Indices: 29637--29750 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 41
29627 GCCCGAAGGT
* *
29637 CTTATAGATGGCCCGAATGACTTATCATCTTGCTCAAAAGA
1 CTTATAGATGGCCCGAAGGACTTATCATCATGCTCAAAAGA
* * * *
29678 CTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCGAAGGACTT-ATCATCATGCTCAAAAGA
* *
29720 TTTACTA-ATGGCTCGAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCGAAGGACTTA-TCATCA
29751 AGAAACCCTT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
41 21 0.36
42 36 0.61
43 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (41 bp):
CTTATAGATGGCCCGAAGGACTTATCATCATGCTCAAAAGA
Found at i:29930 original size:52 final size:52
Alignment explanation
Indices: 29793--30336 Score: 308
Period size: 55 Copynumber: 10.1 Consensus size: 52
29783 TTTGTCAAAG
* *
29793 AACCCCTAAAAATTAGGCTTAATTTCCTTTTAAAAACTCA-TTGAAAATCATCATCAAGA
1 AACCCCT-AAAATTAGGCTTAGTTT-C-TTT-AAAATTCATTTG-AAA--A-CATCAAGA
* * *
29852 AACCCCTGAAAATCAAGCTTAGTTTC-TAAAAATTCATTTGAAAACATCAAGA
1 AACCCCT-AAAATTAGGCTTAGTTTCTTTAAAATTCATTTGAAAACATCAAGA
* * * * * *
29904 AATCCCTAAAAATTAGGCATAATTTCTTTGAAATGCATTTGAAAACATTAAGA
1 AACCCCT-AAAATTAGGCTTAGTTTCTTTAAAATTCATTTGAAAACATCAAGA
* * * * *
29957 AACCCCTAAAGTTAGCCTTAGCTTCTTTCAAATTCCTTTGAAAACATCAAGA
1 AACCCCTAAAATTAGGCTTAGTTTCTTTAAAATTCATTTGAAAACATCAAGA
* * * * *
30009 AACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAAATTCATTTGAAAACATCAAG-
1 AA-CCCCTAAAATTAGGCTTAG--TTTCTTTAAAATTCATTTGAAAACATCAAGA
** * * * *
30063 AACTCATTAAAAATTTGGTTTAGCTTCTTTAAAATTCATTTGAAAACAT-AAAA
1 AAC-CCCT-AAAATTAGGCTTAGTTTCTTTAAAATTCATTTGAAAACATCAAGA
* * * *
30116 AACCCCTGAAAATCATGCTTAGCTTT-TTTAAAAACTCATTTAAAAATCATCAAGA
1 AACCCCT-AAAATTAGGCTTAG-TTTCTTT-AAAATTCATTTGAAAA-CATCAAGA
** ** * * * **
30171 AACTTCTGAAAACCAGACTTAGTTTCTTTAAAAGCTCATTTAAAAATGTCAAGA
1 AACCCCT-AAAATTAGGCTTAGTTTCTTTAAAA-TTCATTTGAAAACATCAAGA
** ** ** ** *
30225 AACTTCTAAAACCCAAACTTAGTTTCTTTAAAAACACATTT-AAAACCATCAATA
1 AACCCCTAAAA-TTAGGCTTAGTTTCTTT-AAAATTCATTTGAAAA-CATCAAGA
*** * * *
30279 AACTTTTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTGAAAATCGTCAAGA
1 AACCCCT-AAAATTAGGCTTAGTTTCTTT-AAAATTCATTTGAAAA-CATCAAGA
30334 AAC
1 AAC
30337 TTTTGAAAAT
Statistics
Matches: 392, Mismatches: 74, Indels: 42
0.77 0.15 0.08
Matches are distributed among these distances:
52 83 0.21
53 96 0.24
54 84 0.21
55 103 0.26
56 4 0.01
58 1 0.00
59 21 0.05
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (52 bp):
AACCCCTAAAATTAGGCTTAGTTTCTTTAAAATTCATTTGAAAACATCAAGA
Found at i:29957 original size:53 final size:52
Alignment explanation
Indices: 29881--30128 Score: 176
Period size: 53 Copynumber: 4.7 Consensus size: 52
29871 TAGTTTCTAA
* * * *
29881 AAATTCATTTGAAAACATCAAGAAATCCCTAAAAATTAGGCATAATTTCTTTG
1 AAATTCATTTGAAAACATCAAGAAACCCCT-AAAATTAGCCATAACTTCTTTC
* * * * *
29934 AAATGCATTTGAAAACATTAAGAAACCCCTAAAGTTAGCCTTAGCTTCTTTC
1 AAATTCATTTGAAAACATCAAGAAACCCCTAAAATTAGCCATAACTTCTTTC
* * * * * * ** *
29986 AAATTCCTTTGAAAACATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTC
1 AAATTCATTTGAAAACATCAAGAAA-CCCCTAAAATTAGCCATA--ACTTCTTTC
** * *** * *
30041 AAATTCATTTGAAAACATCAAG-AACTCATTAAAAATTTGGTTTAGCTTCTTTA
1 AAATTCATTTGAAAACATCAAGAAAC-CCCT-AAAATTAGCCATAACTTCTTTC
*
30094 AAATTCATTTGAAAACAT-AAAAAACCCCTGAAAAT
1 AAATTCATTTGAAAACATCAAGAAACCCCT-AAAAT
30129 CATGCTTAGC
Statistics
Matches: 155, Mismatches: 34, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
52 47 0.30
53 69 0.45
54 3 0.02
55 36 0.23
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (52 bp):
AAATTCATTTGAAAACATCAAGAAACCCCTAAAATTAGCCATAACTTCTTTC
Found at i:30136 original size:107 final size:108
Alignment explanation
Indices: 29974--30171 Score: 274
Period size: 107 Copynumber: 1.8 Consensus size: 108
29964 AAAGTTAGCC
* * * * *
29974 TTAGCTTCTTTCAAATTCCTTTGAAAACATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTT
1 TTAGCTTCTTTAAAATTCATTTGAAAACATCAAAAAACCCCCGAAAATCAGGCTTAG-CTTTTTT
** * *
30039 TCAAATTCATTTGAAAA-CATCAAGAACTCATTAAAAATTTGGT
65 AAAAACTCATTTAAAAATCATCAAGAACTCATTAAAAATTTGGT
* *
30082 TTAGCTTCTTTAAAATTCATTTGAAAACAT-AAAAAACCCCTGAAAATCATGCTTAGCTTTTTTA
1 TTAGCTTCTTTAAAATTCATTTGAAAACATCAAAAAACCCCCGAAAATCAGGCTTAGCTTTTTTA
30146 AAAACTCATTTAAAAATCATCAAGAA
66 AAAACTCATTTAAAAATCATCAAGAA
30172 ACTTCTGAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
106 19 0.24
107 31 0.40
108 28 0.36
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (108 bp):
TTAGCTTCTTTAAAATTCATTTGAAAACATCAAAAAACCCCCGAAAATCAGGCTTAGCTTTTTTA
AAAACTCATTTAAAAATCATCAAGAACTCATTAAAAATTTGGT
Found at i:30139 original size:160 final size:162
Alignment explanation
Indices: 29821--30173 Score: 396
Period size: 160 Copynumber: 2.2 Consensus size: 162
29811 TTAATTTCCT
* * * * * **
29821 TTTAAAAACTCATTGAAAATCATCATCAAGAAACCCCTGAAAATCAAGCTTAG---TTTCTAAAA
1 TTTAAAAACTCATTTAAAA--ATCATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAA
* * *
29883 ATTCATTTGAAAACATCAAGAAATCCCTAAAAATTAGGCATAATTTCTTTGAAATGCATTTGAAA
64 ATTCATTTGAAAACATCAAGAAATCACTAAAAATTAGGCATAACTTCTTTAAAATGCATTTGAAA
* * *
29948 ACATTAAGAAACCCCTAAAGTTAGCCTTAGCTTC
129 ACATTAAAAAACCCCTAAAATCAGCCTTAGCTTC
* * * *
29982 TTT-CAAATTCCTTTGAAAA-CATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAAAT
1 TTTAAAAACTCATTTAAAAATCATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAAAT
* * * ** * *
30045 TCATTTGAAAACATCAAGAACTCATTAAAAATTTGGTTTAGCTTCTTTAAAATTCATTTGAAAAC
66 TCATTTGAAAACATCAAGAAATCACTAAAAATTAGGCATAACTTCTTTAAAATGCATTTGAAAAC
*
30110 A-TAAAAAACCCCTGAAAATCATG-CTTAGCTTT
131 ATTAAAAAACCCCT-AAAATCA-GCCTTAGCTTC
30142 TTTAAAAACTCATTTAAAAATCATCAAGAAAC
1 TTTAAAAACTCATTTAAAAATCATCAAGAAAC
30174 TTCTGAAAAC
Statistics
Matches: 156, Mismatches: 29, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
157 27 0.17
158 1 0.01
159 11 0.07
160 90 0.58
161 16 0.10
162 11 0.07
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (162 bp):
TTTAAAAACTCATTTAAAAATCATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAAAT
TCATTTGAAAACATCAAGAAATCACTAAAAATTAGGCATAACTTCTTTAAAATGCATTTGAAAAC
ATTAAAAAACCCCTAAAATCAGCCTTAGCTTC
Found at i:30155 original size:53 final size:53
Alignment explanation
Indices: 29844--30336 Score: 267
Period size: 54 Copynumber: 9.2 Consensus size: 53
29834 TGAAAATCAT
*
29844 CATCAAGAAACCCCTGAAAATCAAGCTTAG--TTTCTAAAAATTCATTTGAAAA
1 CATCAAGAAACCCCTGAAAATC-AGCTTAGCTTTTTTAAAAATTCATTTGAAAA
* * * * * * *
29896 CATCAAGAAATCCCTAAAAATTAGGCATA-ATTTCTTT-GAAATGCATTTGAAAA
1 CATCAAGAAACCCCTGAAAATCA-GCTTAGCTTT-TTTAAAAATTCATTTGAAAA
* * * * * *
29949 CATTAAGAAACCCCT-AAAGTTAGCCTTAGCTTCTTT-CAAATTCCTTTGAAAA
1 CATCAAGAAACCCCTGAAAATCAG-CTTAGCTTTTTTAAAAATTCATTTGAAAA
* * * **
30001 CATCAAGAAACCCCCGAAAGTCAGGCTTAGTTTTTTTTTCAAATTCATTTGAAAA
1 CATCAAGAAACCCCTGAAAATCA-GCTTAG-CTTTTTTAAAAATTCATTTGAAAA
** * ** * *
30056 CATCAAG-AACTCATTAAAAATTTGGTTTAGCTTCTTT-AAAATTCATTTGAAAA
1 CATCAAGAAAC-CCCTGAAAA-TCAGCTTAGCTTTTTTAAAAATTCATTTGAAAA
* * *
30109 CAT-AAAAAACCCCTGAAAATCATGCTTAGCTTTTTTAAAAACTCATTTAAAAA
1 CATCAAGAAACCCCTGAAAATCA-GCTTAGCTTTTTTAAAAATTCATTTGAAAA
** * ** *
30162 TCATCAAGAAACTTCTGAAAACCAGACTTAG-TTTCTTTAAAAGCTCATTTAAAAA
1 -CATCAAGAAACCCCTGAAAATCAG-CTTAGCTTT-TTTAAAAATTCATTTGAAAA
** ** * * **
30217 TGTCAAGAAACTTCT-AAAACCCAAACTTAG-TTTCTTTAAAAACACATTT-AAAA
1 CATCAAGAAACCCCTGAAAA-TC-AGCTTAGCTTT-TTTAAAAATTCATTTGAAAA
* *** * *
30270 CCATCAATAAACTTTTGAAAATTAGACTTAG-TTTCTTTAAAAACTCATTTGAAAA
1 -CATCAAGAAACCCCTGAAAATCAG-CTTAGCTTT-TTTAAAAATTCATTTGAAAA
*
30325 TCGTCAAGAAAC
1 -CATCAAGAAAC
30337 TTTTGAAAAT
Statistics
Matches: 352, Mismatches: 64, Indels: 47
0.76 0.14 0.10
Matches are distributed among these distances:
51 3 0.01
52 80 0.23
53 86 0.24
54 94 0.27
55 88 0.25
56 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (53 bp):
CATCAAGAAACCCCTGAAAATCAGCTTAGCTTTTTTAAAAATTCATTTGAAAA
Found at i:30247 original size:54 final size:55
Alignment explanation
Indices: 30082--30345 Score: 274
Period size: 54 Copynumber: 4.9 Consensus size: 55
30072 AAAATTTGGT
* * * * ** *
30082 TTAGCTTCTTT-AAAATTCATTTGAAAA-CAT-AAAAAACCCCTGAAAATCATG-C
1 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCA-GAC
30134 TTAGCTTT-TTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCAGAC
1 TTAG-TTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCAGAC
* * *
30189 TTAGTTTCTTTAAAAGCTCATTTAAAAAT-GTCAAGAAACTTCT-AAAACCCAAAC
1 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAA-CCAGAC
* * * * **
30243 TTAGTTTCTTTAAAAACACATTT-AAAACCATCAATAAACTTTTGAAAATTAGAC
1 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCAGAC
* * *
30297 TTAGTTTCTTTAAAAACTCATTTGAAAATCGTCAAGAAACTTTTGAAAA
1 TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAA
30346 TCAAAAACTT
Statistics
Matches: 179, Mismatches: 23, Indels: 17
0.82 0.11 0.08
Matches are distributed among these distances:
52 7 0.04
53 24 0.13
54 82 0.46
55 66 0.37
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.33
Consensus pattern (55 bp):
TTAGTTTCTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCAGAC
Found at i:30289 original size:108 final size:110
Alignment explanation
Indices: 30133--30338 Score: 310
Period size: 108 Copynumber: 1.9 Consensus size: 110
30123 GAAAATCATG
* *
30133 CTTAGCTTTTTTAAAAACTCATTTAAAAATCATCAAGAAACTTCTGAAAACCAGACTTAGTTTCT
1 CTTAGCTTTTTTAAAAACACATTTAAAAACCATCAAGAAACTTCTGAAAACCAGACTTAGTTTCT
*
30198 TTAAAAGCTCATTTAAAAAT-GTCAAGAAACTTCTAAAACCCAAA
66 TTAAAAACTCATTTAAAAATCGTCAAGAAACTTCTAAAACCCAAA
* * **
30242 CTTAG-TTTCTTTAAAAACACATTT-AAAACCATCAATAAACTTTTGAAAATTAGACTTAGTTTC
1 CTTAGCTTT-TTTAAAAACACATTTAAAAACCATCAAGAAACTTCTGAAAACCAGACTTAGTTTC
*
30305 TTTAAAAACTCATTTGAAAATCGTCAAGAAACTT
65 TTTAAAAACTCATTTAAAAATCGTCAAGAAACTT
30339 TTGAAAATCA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
108 56 0.64
109 31 0.36
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (110 bp):
CTTAGCTTTTTTAAAAACACATTTAAAAACCATCAAGAAACTTCTGAAAACCAGACTTAGTTTCT
TTAAAAACTCATTTAAAAATCGTCAAGAAACTTCTAAAACCCAAA
Found at i:30354 original size:72 final size:73
Alignment explanation
Indices: 30272--30417 Score: 231
Period size: 72 Copynumber: 2.0 Consensus size: 73
30262 ATTTAAAACC
* * * *
30272 ATCAATAAACTTTTGAAAATTAGACTTAGTTTCTTTAAAAACTCATTTGAAAATCGTCAAGAAAC
1 ATCAATAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATAGTCAAGAAAC
*
30337 TTTTGAAA
66 TTCTGAAA
*
30345 ATCAA-AAACTTCTGAAAATCAGACTTAGTTTTTTTAAAAACTCATTTAAAAATAGTCAAGAAAC
1 ATCAATAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATAGTCAAGAAAC
30409 TTCTGAAA
66 TTCTGAAA
30417 A
1 A
30418 GCATATTTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 62 0.93
73 5 0.07
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.34
Consensus pattern (73 bp):
ATCAATAAACTTCTGAAAATCAGACTTAGTTTCTTTAAAAACTCATTTAAAAATAGTCAAGAAAC
TTCTGAAA
Found at i:30355 original size:17 final size:18
Alignment explanation
Indices: 30328--30365 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
30318 TTGAAAATCG
*
30328 TCAAGAAACTTTTGAAAA
1 TCAAGAAACTTCTGAAAA
30346 TCAA-AAACTTCTGAAAA
1 TCAAGAAACTTCTGAAAA
30363 TCA
1 TCA
30366 GACTTAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (18 bp):
TCAAGAAACTTCTGAAAA
Found at i:31616 original size:77 final size:79
Alignment explanation
Indices: 31485--31633 Score: 209
Period size: 77 Copynumber: 1.9 Consensus size: 79
31475 ATATAGTAAG
*
31485 TAAACATTAAACGATTGTAATTTTGATTACAACTCTTGTAATTGATATTTAATTTAGAA-TAATT
1 TAAACATTAAACGATTGTAATTATGATTACAACTCTTGTAATTGATATTTAATTTA-AATTAATT
31549 AAATAAGATTTTAAA
65 AAATAAGATTTTAAA
* *
31564 TAAACATTAAA-GATTGTAATTCAT-ATTATAAGTCTT-TAA-TGTATATTTAATTTAAATTAAT
1 TAAACATTAAACGATTGTAATT-ATGATTACAACTCTTGTAATTG-ATATTTAATTTAAATTAAT
31625 TAAATAAGA
64 TAAATAAGA
31634 AATTTATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
76 4 0.06
77 28 0.44
78 20 0.31
79 12 0.19
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.42
Consensus pattern (79 bp):
TAAACATTAAACGATTGTAATTATGATTACAACTCTTGTAATTGATATTTAATTTAAATTAATTA
AATAAGATTTTAAA
Found at i:33639 original size:6 final size:7
Alignment explanation
Indices: 33624--33735 Score: 89
Period size: 7 Copynumber: 14.6 Consensus size: 7
33614 GATCTGTCTA
33624 TTTTCTT
1 TTTTCTT
33631 TTTTCTTT
1 TTTTC-TT
33639 TTTTCACTT
1 TTTT--CTT
33648 TTTTCCGCTT
1 TTTT---CTT
33658 TTTTCTT
1 TTTTCTT
*
33665 TTTCCTT
1 TTTTCTT
33672 TTTTCTT
1 TTTTCTT
33679 TTTTCTT
1 TTTTCTT
*
33686 TTTGCTT
1 TTTTCTT
*
33693 CTATTTGTT
1 -T-TTTCTT
*
33702 TTTTCTCA
1 TTTTCT-T
*
33710 CTTTCTT
1 TTTTCTT
33717 TTTTCTT
1 TTTTCTT
33724 TCTTTCTT
1 T-TTTCTT
33732 TTTT
1 TTTT
33736 TTATCTTTTT
Statistics
Matches: 86, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
7 47 0.55
8 20 0.23
9 10 0.12
10 9 0.10
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTCTT
Found at i:33681 original size:15 final size:14
Alignment explanation
Indices: 33624--33735 Score: 89
Period size: 15 Copynumber: 7.3 Consensus size: 14
33614 GATCTGTCTA
33624 TTTTCTTTTTTCTTT
1 TTTTCTTTTTTC-TT
33639 TTTTCACTTTTTTCCGCTT
1 TTTT--CTTTTTT---CTT
*
33658 TTTTCTTTTTCCTT
1 TTTTCTTTTTTCTT
33672 TTTTCTTTTTTCTT
1 TTTTCTTTTTTCTT
* *
33686 TTTGCTTCTATTTGTT
1 TTTTCTT-T-TTTCTT
**
33702 TTTTCTCACTTTCTT
1 TTTTCT-TTTTTCTT
33717 TTTTCTTTCTTTCTT
1 TTTTCTTT-TTTCTT
33732 TTTT
1 TTTT
33736 TTATCTTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
14 22 0.28
15 26 0.33
16 10 0.13
17 13 0.17
19 6 0.08
20 1 0.01
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTTCTTTTTTCTT
Found at i:33735 original size:31 final size:29
Alignment explanation
Indices: 33655--33736 Score: 78
Period size: 31 Copynumber: 2.8 Consensus size: 29
33645 CTTTTTTCCG
* **
33655 CTTTTTTCTT-TTTCCTTTTTTCTTTTTT
1 CTTTTTTCTTCTTTCTTTTTTTCTACTTT
*
33683 CTTTTTGCTTCTATT-TGTTTTTTCTCACTTT
1 CTTTTTTCTTCT-TTCT-TTTTTTCT-ACTTT
33714 CTTTTTTCTTTCTTTCTTTTTTT
1 CTTTTTTC-TTCTTTCTTTTTTT
33737 TATCTTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 9 0.21
29 1 0.02
30 10 0.23
31 18 0.42
32 5 0.12
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.77
Consensus pattern (29 bp):
CTTTTTTCTTCTTTCTTTTTTTCTACTTT
Found at i:33751 original size:26 final size:25
Alignment explanation
Indices: 33716--33778 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
33706 CTCACTTTCT
* * *
33716 TTTTTCTTTCTTTCTTTTTTTTATC
1 TTTTTATTTCTTTCTTTGTTATATC
33741 TTTTTAATTTCTTT-TTTGTTATAT-
1 TTTTT-ATTTCTTTCTTTGTTATATC
33765 TTTTTA-TTCTTTCT
1 TTTTTATTTCTTTCT
33779 CTATATGTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 6 0.18
23 2 0.06
24 5 0.15
25 13 0.39
26 7 0.21
ACGTcount: A:0.10, C:0.11, G:0.02, T:0.78
Consensus pattern (25 bp):
TTTTTATTTCTTTCTTTGTTATATC
Found at i:33754 original size:22 final size:23
Alignment explanation
Indices: 33726--33776 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
33716 TTTTTCTTTC
*
33726 TTTCTTTTTT-TTATCTTTTTAA
1 TTTCTTTTTTGTTATATTTTTAA
*
33748 TTTCTTTTTTGTTATATTTTTTA
1 TTTCTTTTTTGTTATATTTTTAA
33771 -TTCTTT
1 TTTCTTT
33777 CTCTATATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTCTTTTTTGTTATATTTTTAA
Found at i:36903 original size:28 final size:28
Alignment explanation
Indices: 36872--36936 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
36862 AAAAAATTTC
36872 TTTTAAAAGTGTTTTTAAGAAAACATCA
1 TTTTAAAAGTGTTTTTAAGAAAACATCA
36900 TTTTAAAAGTGTTTTTAAGAAAACATCA
1 TTTTAAAAGTGTTTTTAAGAAAACATCA
36928 TTTTAAAAG
1 TTTTAAAAG
36937 ATAAATCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (28 bp):
TTTTAAAAGTGTTTTTAAGAAAACATCA
Found at i:41817 original size:7 final size:7
Alignment explanation
Indices: 41805--41846 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
41795 GCATTTTTAA
41805 AATTTTC
1 AATTTTC
41812 AATTTTC
1 AATTTTC
41819 AATTTTC
1 AATTTTC
41826 AATTTTC
1 AATTTTC
41833 AATTTTC
1 AATTTTC
41840 AATTTTC
1 AATTTTC
41847 GTCCACAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTTTC
Found at i:42370 original size:28 final size:28
Alignment explanation
Indices: 42330--42394 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
42320 TATGGCATCA
*
42330 CAAAGCCGATTTCCGTTGTTGGTCCCAC
1 CAAAGCCGATTTCCGTTGCTGGTCCCAC
*
42358 CAAAGTCGATTTCCGTTGCTGGTCCCAC
1 CAAAGCCGATTTCCGTTGCTGGTCCCAC
42386 CAAAGCCGA
1 CAAAGCCGA
42395 CATACTAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (28 bp):
CAAAGCCGATTTCCGTTGCTGGTCCCAC
Found at i:48828 original size:2 final size:2
Alignment explanation
Indices: 48821--48848 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
48811 CATACCATAG
48821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48849 TAAAATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53791 original size:94 final size:94
Alignment explanation
Indices: 53659--53839 Score: 274
Period size: 94 Copynumber: 1.9 Consensus size: 94
53649 TAAAAAGTCA
* * * * *
53659 TTAATGCATTGTTACGCATTTTCAATTGTAGCATCATTTCATGCTGATAATGCACCGTTATGTA-
1 TTAAAGCATCGTTACGCATTTTCAATTGTAGCATCATTTCATGCCGATAATGCACCATTATGCAT
53723 TTTTTCATTTGTGGCATCCTTTTATGTTG
66 TTTTTCATTTGTGGCATCCTTTTATGTTG
* * *
53752 TTAAAGCATCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGATAATGCACCATTATGCA
1 TTAAAGCATCGTTACGCA-TTTTCAATTGTAGCATCATTTCATGCCGATAATGCACCATTATGCA
53817 TTTTTTCATTTGTGGCATCCTTT
65 TTTTTTCATTTGTGGCATCCTTT
53840 CATGCCGATA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 15 0.19
94 41 0.53
95 22 0.28
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (94 bp):
TTAAAGCATCGTTACGCATTTTCAATTGTAGCATCATTTCATGCCGATAATGCACCATTATGCAT
TTTTTCATTTGTGGCATCCTTTTATGTTG
Found at i:53834 original size:48 final size:47
Alignment explanation
Indices: 53660--53856 Score: 234
Period size: 47 Copynumber: 4.2 Consensus size: 47
53650 AAAAAGTCAT
** * * * *
53660 TAATGCATTGTTACGCA-TTTTCAATTGTAGCATCATTTCATGCTGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGA
* * * ** *
53706 TAATGCACCGTTATGTATTTTTCATTTGTGGCATCCTTTTATGTTGT
1 TAATGCACCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGA
* *
53753 TAAAGCATCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGA
* *
53800 TAATGCACCATTATGCATTTTTTCATTTGTGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCA-TTTTTCATTTGTGGCATCATTTCATGCCGA
53848 TAATGCACC
1 TAATGCACC
53857 TTTTAGAGCA
Statistics
Matches: 127, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
46 13 0.10
47 76 0.60
48 38 0.30
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (47 bp):
TAATGCACCGTTATGCATTTTTCATTTGTGGCATCATTTCATGCCGA
Found at i:54279 original size:20 final size:20
Alignment explanation
Indices: 54254--54331 Score: 63
Period size: 21 Copynumber: 3.9 Consensus size: 20
54244 AGGATCAATA
54254 GTATCGATACCCCTACCATG
1 GTATCGATACCCCTACCATG
*** *
54274 GTATCGATATTTCTATCTATG
1 GTATCGATACCCCTA-CCATG
54295 GTATCGATACTCCCT-CTCA--
1 GTATCGATAC-CCCTAC-CATG
*
54314 GTATTGATACCCCTACCA
1 GTATCGATACCCCTACCA
54332 ATACACTAGT
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
18 6 0.13
19 10 0.22
20 13 0.29
21 14 0.31
22 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.33
Consensus pattern (20 bp):
GTATCGATACCCCTACCATG
Found at i:55161 original size:13 final size:13
Alignment explanation
Indices: 55143--55212 Score: 77
Period size: 13 Copynumber: 5.0 Consensus size: 13
55133 GACCGGTCAC
55143 AACCCGACCCGTT
1 AACCCGACCCGTT
55156 AACCCGACCCGTT
1 AACCCGACCCGTT
*
55169 AACCCAACCCGTT
1 AACCCGACCCGTT
55182 GACTCTACCCGACCCGTT
1 -A----ACCCGACCCGTT
*
55200 AACTCGACCCGTT
1 AACCCGACCCGTT
55213 GACCGTTAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
13 36 0.73
14 1 0.02
17 1 0.02
18 11 0.22
ACGTcount: A:0.23, C:0.44, G:0.14, T:0.19
Consensus pattern (13 bp):
AACCCGACCCGTT
Found at i:55192 original size:31 final size:31
Alignment explanation
Indices: 55157--55215 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
55147 CGACCCGTTA
55157 ACCCGACCCGTTAACCCAACCCGTTGACTCT
1 ACCCGACCCGTTAACCCAACCCGTTGACTCT
* *
55188 ACCCGACCCGTTAACTCGACCCGTTGAC
1 ACCCGACCCGTTAACCCAACCCGTTGAC
55216 CGTTAACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.22, C:0.44, G:0.15, T:0.19
Consensus pattern (31 bp):
ACCCGACCCGTTAACCCAACCCGTTGACTCT
Found at i:55210 original size:18 final size:18
Alignment explanation
Indices: 55170--55210 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
55160 CGACCCGTTA
* * *
55170 ACCCAACCCGTTGACTCT
1 ACCCGACCCGTTAACTCG
55188 ACCCGACCCGTTAACTCG
1 ACCCGACCCGTTAACTCG
55206 ACCCG
1 ACCCG
55211 TTGACCGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.46, G:0.15, T:0.17
Consensus pattern (18 bp):
ACCCGACCCGTTAACTCG
Found at i:56557 original size:18 final size:18
Alignment explanation
Indices: 56531--56566 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
56521 TCGAAAGGAC
*
56531 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
56549 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
56567 CAGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:57702 original size:24 final size:24
Alignment explanation
Indices: 57675--57790 Score: 162
Period size: 24 Copynumber: 4.8 Consensus size: 24
57665 TTCGATTTGA
57675 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
*
57699 ATTCTGATCTGATA-TCTGACATAG
1 ATTCTGATCTGATACT-TGACATGG
* *
57723 ATTTTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
*
57747 ATTCTGATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
57771 ATTTTGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
57791 CTGATTTATG
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.01
24 80 0.98
25 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:58011 original size:2 final size:2
Alignment explanation
Indices: 58004--58068 Score: 121
Period size: 2 Copynumber: 32.5 Consensus size: 2
57994 TGGATGGGGG
58004 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
58046 TA TA TA TA TA TA CA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
58069 GTTTTTTATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:60070 original size:18 final size:18
Alignment explanation
Indices: 60004--60073 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
59994 ACCGGTCACA
*
60004 ACCCGACCCGACCCGTTA
1 ACCCGACCCGACCCGTTG
*
60022 ACCCGACCCGACCCGTTT
1 ACCCGACCCGACCCGTTG
60040 A-CC-A---GACCCGTTG
1 ACCCGACCCGACCCGTTG
60053 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
60071 ACC
1 ACC
60074 GTTGACCCGT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
13 9 0.20
14 2 0.04
15 1 0.02
16 1 0.02
17 2 0.04
18 30 0.67
ACGTcount: A:0.20, C:0.49, G:0.19, T:0.13
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:60073 original size:13 final size:13
Alignment explanation
Indices: 60026--60062 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
60016 CCGTTAACCC
60026 GACCCGACCCGTT
1 GACCCGACCCGTT
* *
60039 TACCAGACCCGTT
1 GACCCGACCCGTT
60052 GACCCGACCCG
1 GACCCGACCCG
60063 ACCCGTTGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.19, C:0.46, G:0.22, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:60077 original size:7 final size:7
Alignment explanation
Indices: 60065--60096 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
60055 CCGACCCGAC
60065 CCGTTGA
1 CCGTTGA
60072 CCGTTGA
1 CCGTTGA
60079 CCCGTTGA
1 -CCGTTGA
60087 CCGTTGA
1 CCGTTGA
60094 CCG
1 CCG
60097 GCGTTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.25
Consensus pattern (7 bp):
CCGTTGA
Found at i:60082 original size:15 final size:15
Alignment explanation
Indices: 60062--60105 Score: 70
Period size: 15 Copynumber: 2.8 Consensus size: 15
60052 GACCCGACCC
60062 GACCCGTTGACCGTT
1 GACCCGTTGACCGTT
60077 GACCCGTTGACCGTT
1 GACCCGTTGACCGTT
60092 GACCGGCGTTGACC
1 GACC--CGTTGACC
60106 ACTGTTGACC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 19 0.70
17 8 0.30
ACGTcount: A:0.14, C:0.34, G:0.30, T:0.23
Consensus pattern (15 bp):
GACCCGTTGACCGTT
Found at i:62573 original size:24 final size:24
Alignment explanation
Indices: 62546--62661 Score: 153
Period size: 24 Copynumber: 4.8 Consensus size: 24
62536 TTCGATTTGA
62546 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
*
62570 ATTCTGATCTGATA-TCTGACATAG
1 ATTCTGATCTGATACT-TGACATGG
* *
62594 ATTTTGATCTGATACTTGACTTGG
1 ATTCTGATCTGATACTTGACATGG
* *
62618 ATTCTGATATGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
62642 ATTTTGATATGATACTTGAC
1 ATTCTGATCTGATACTTGAC
62662 CTGATTTATG
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.01
24 80 0.98
25 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:64260 original size:21 final size:21
Alignment explanation
Indices: 64235--64303 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
64225 TACTTACCAA
64235 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
* **
64256 TTATTTACCAATATA-ATTTTAA--
1 TTA-TT-CC-ATA-AGCTCGTAAGC
64278 TTATTCCATAAGCTCGTAAGC
1 TTATTCCATAAGCTCGTAAGC
64299 TTATT
1 TTATT
64304 TGCATGCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
18 1 0.03
19 7 0.20
20 2 0.06
21 10 0.29
22 5 0.14
23 2 0.06
24 7 0.20
25 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (21 bp):
TTATTCCATAAGCTCGTAAGC
Found at i:64294 original size:43 final size:45
Alignment explanation
Indices: 64152--64304 Score: 238
Period size: 45 Copynumber: 3.4 Consensus size: 45
64142 CATTTATCCG
*
64152 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCAATTATTCC
* *
64197 ATAAGCTCTTAAGCTTATTTTATCAATATACTTACCAATTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCAATTATTCC
* **
64242 ATAAGCTCGTAAGCTTA-TTTACCAATATAATT-TTAATTATTCC
1 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCAATTATTCC
64285 ATAAGCTCGTAAGCTTATTT
1 ATAAGCTCGTAAGCTTATTT
64305 GCATGCTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
43 26 0.26
44 15 0.15
45 58 0.59
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (45 bp):
ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCAATTATTCC
Found at i:64461 original size:40 final size:40
Alignment explanation
Indices: 64404--64565 Score: 261
Period size: 40 Copynumber: 4.0 Consensus size: 40
64394 TTTGCACCGC
* * *
64404 TACACATAAGGTCGTGCCCGCCATATACACCGAAGTGTAT
1 TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
**
64444 TACACATAAGGTTGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
* *
64484 TACACATAAGGTCATGCCCACCATATACATCGAAGTGTAT
1 TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
64524 TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
64564 TA
1 TA
64566 TAAACCTGCA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTCATGCCCACCATATACACCAAAGTGTAT
Found at i:65404 original size:17 final size:17
Alignment explanation
Indices: 65382--65415 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
65372 AGCATAGTAC
65382 ATCAATTATATAACACT
1 ATCAATTATATAACACT
65399 ATCAATTATATAACACT
1 ATCAATTATATAACACT
65416 TACACAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCAATTATATAACACT
Found at i:71931 original size:47 final size:47
Alignment explanation
Indices: 71877--72115 Score: 304
Period size: 47 Copynumber: 5.1 Consensus size: 47
71867 AAAAAGTCGT
*
71877 TAATGCACCATTATGCA-TTTTCATTTGTGACATCCTTTCAATGCCGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGACATCCTTTC-ATGCCGA
* * * * * *
71924 TAATGCACCGTTATGCATTTTTTATTTCTG-CATCATTTTAAGCTGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGACATCCTTTCATGCCGA
* * *
71970 TAATTCATCGTTATGCATTTTTCATTTGTGGA-ATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTTCATTTGT-GACATCCTTTCATGCCGA
** * *
72017 TAATGCATTGTTATGCATTTTTCATTTGTGGCATCCTTTCATGTCGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGACATCCTTTCATGCCGA
*
72064 TAATGCACCGTTATGCATTTTTCATTTGTGGCATCCTTTCATGCCGA
1 TAATGCACCGTTATGCATTTTTCATTTGTGACATCCTTTCATGCCGA
72111 TAATG
1 TAATG
72116 TACCTTTTAG
Statistics
Matches: 166, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
46 31 0.19
47 125 0.75
48 10 0.06
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (47 bp):
TAATGCACCGTTATGCATTTTTCATTTGTGACATCCTTTCATGCCGA
Found at i:75062 original size:11 final size:10
Alignment explanation
Indices: 75025--75054 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
75015 CACCCAATAA
75025 AGAAAAAAAT
1 AGAAAAAAAT
75035 AGAAAAAAAT
1 AGAAAAAAAT
75045 AGAAAAAAAT
1 AGAAAAAAAT
75055 GAGTAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:77606 original size:259 final size:258
Alignment explanation
Indices: 77140--78035 Score: 1199
Period size: 259 Copynumber: 3.4 Consensus size: 258
77130 AGTTGTTTCG
* * *
77140 AAAATAAGAAAGCAATTTCCAAATTTTCTTATTTAAATCTTTTCAGAAAATGAATTTTTTTAAAA
1 AAAATGAGAAAGCAATTTCC-AATTTTCTCATTTAAATCTTTTCAGAAAAT-AAATTTTTT-AAA
*
77205 AAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTA-TTCCTAAATTGGTAAGTCTTTC
63 AAGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCTAAATTGGTAAGTCCTTC
* * * *
77269 GGGCCATCAGTAAATCTTTCGAGCATGATGATTAAATACTTCAGGTCATCTATAAGTCTATCGAG
128 GGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTATAAGTCTTTCGAG
* * *
77334 CAAGATGATAAGTCCTTCAGACCATCCGTAAGACCTTCAGGTAGGATGTTTTCACATGAATTTTG
193 CAAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTTACATGAATTTTG
77399 A
258 A
*
77400 AAAATGAGAAAGCAATTTCCAATGTTTCTCATTTAAATCTTTTCAGAAAATGGAA-TTTTTAAAA
1 AAAATGAGAAAGCAATTTCCAAT-TTTCTCATTTAAATCTTTTCAGAAAAT-AAATTTTTTAAAA
* * * * **
77464 ACTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATTTTTAAGTCCTTCG
64 AGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCTAAATTGGTAAGTCCTTCG
* * * *
77529 GGCCAACAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTAAGTCATCTATAAGTCTTTCAAAC
129 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTATAAGTCTTTCGAGC
* *
77594 AAGATGATAAGTCCTTTAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTTACATGAATTTCGA
194 AAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTTACATGAATTTTGA
* * * * *
77659 AAAATGAGAAAGCGATTTCCAAAGTTTCTCACTTAAATCTTTTCAGAAAATGAAA-GTTTTGAAA
1 AAAATGAGAAAGCAATTTCC-AATTTTCTCATTTAAATCTTTTCAGAAAAT-AAATTTTTTAAAA
* * * *
77723 AGTAAGAAAGCGATTTCCAAAGTTTTTTACCTAGTAAATTATTTCCCAAATTGGTAAGTCCTTCG
64 AGTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCTAAATTGGTAAGTCCTTCG
* * * *
77788 GGCCATCAATAAGTCTTTCGAGCATGACGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGC
129 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTATAAGTCTTTCGAGC
* * * * *
77853 AAGATGATAAGTTCTTCGGGCTATCCGTAAGAACTTTGGGTAGGATGTTTTTACATGAA-TTTGA
194 AAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTTACATGAATTTTG-
77917 AAA
258 --A
* * * * * *
77920 AAAATGAGAAAGCGATTTCGAAATATTGTCATTT-AATGTTTTCAGAAAATAAATTTTTTGAAAA
1 AAAATGAGAAAGCAATTTC-CAATTTTCTCATTTAAATCTTTTCAGAAAATAAATTTTTTAAAAA
* * *
77984 GTAAGAAAACGATTTCAAAAGTTTCTTACCTAGTAAACTATTTCCTAAATTG
65 GTAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCTAAATTG
78036 ATCTGACTAC
Statistics
Matches: 564, Mismatches: 64, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
258 45 0.08
259 370 0.66
260 120 0.21
261 29 0.05
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (258 bp):
AAAATGAGAAAGCAATTTCCAATTTTCTCATTTAAATCTTTTCAGAAAATAAATTTTTTAAAAAG
TAAGAAAGCGATTTCCAAAGTTTCTTACCCAGTAAACTATTTCCTAAATTGGTAAGTCCTTCGGG
CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTATAAGTCTTTCGAGCAA
GATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTTACATGAATTTTGA
Found at i:78741 original size:20 final size:20
Alignment explanation
Indices: 78693--78755 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
78683 CACAGACTGA
78693 CCCTGGTGAGTCACAG-C-C
1 CCCTGGTGAGTCACAGTCGC
78711 ACCCTGGTGAGTCACAGTCGC
1 -CCCTGGTGAGTCACAGTCGC
* * *
78732 CCCTGTTGAGTGATAGTCGC
1 CCCTGGTGAGTCACAGTCGC
78752 CCCT
1 CCCT
78756 AGTCACTGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.41
20 22 0.56
21 1 0.03
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.22
Consensus pattern (20 bp):
CCCTGGTGAGTCACAGTCGC
Found at i:79808 original size:45 final size:46
Alignment explanation
Indices: 79720--79816 Score: 117
Period size: 48 Copynumber: 2.1 Consensus size: 46
79710 GTTTGTTGTG
* * *
79720 TTATATTATTATTATATTATATTCCCCATATAGGTAACTTTTACATA
1 TTATATTATTATTATATTATATTACACACATAGGTAAC-TTTACATA
* *
79767 TATATATTATTATTATTTTAT-TTACATACATAGGTAA-TTTACATA
1 T-TATATTATTATTATATTATATTACACACATAGGTAACTTTACATA
79812 TTATA
1 TTATA
79817 ATATATATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
44 4 0.09
45 9 0.20
47 13 0.30
48 18 0.41
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (46 bp):
TTATATTATTATTATATTATATTACACACATAGGTAACTTTACATA
Found at i:84383 original size:19 final size:21
Alignment explanation
Indices: 84347--84385 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84337 TAGTTAGCAA
84347 AGGTTGTTAGATAGTCAGTTT
1 AGGTTGTTAGATAGTCAGTTT
84368 AGGTTGTTA-A-AGTCAGTT
1 AGGTTGTTAGATAGTCAGTT
84386 AAGGAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 1 0.06
21 9 0.50
ACGTcount: A:0.26, C:0.05, G:0.28, T:0.41
Consensus pattern (21 bp):
AGGTTGTTAGATAGTCAGTTT
Found at i:92724 original size:17 final size:17
Alignment explanation
Indices: 92698--92745 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
92688 CAAAAATCAT
*
92698 AAAATATGACTTTTCAA
1 AAAATTTGACTTTTCAA
*
92715 AAAATTTGACTTTTCGA
1 AAAATTTGACTTTTCAA
92732 AAAATTTGACTTTT
1 AAAATTTGACTTTT
92746 TGGTCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (17 bp):
AAAATTTGACTTTTCAA
Found at i:92914 original size:17 final size:17
Alignment explanation
Indices: 92888--92936 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
92878 GTCAAAGTTA
92888 ACGGTCAATGGTCAACG
1 ACGGTCAATGGTCAACG
*
92905 ACGGTTAATGGTCAACG
1 ACGGTCAATGGTCAACG
* *
92922 GCGGTCAACGGTCAA
1 ACGGTCAATGGTCAA
92937 AGGGCCAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.31, T:0.18
Consensus pattern (17 bp):
ACGGTCAATGGTCAACG
Found at i:99843 original size:24 final size:24
Alignment explanation
Indices: 99813--99870 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
99803 GTCGGGTCGG
*
99813 ACCGGGTCAAACCTGGTTGGTCAA
1 ACCGGGTCAAACCTGGTCGGTCAA
* *
99837 ACTGGGTCAAACTTGGTCGGTCAA
1 ACCGGGTCAAACCTGGTCGGTCAA
99861 ACCGGGTCAA
1 ACCGGGTCAA
99871 CTACCCAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (24 bp):
ACCGGGTCAAACCTGGTCGGTCAA
Found at i:101032 original size:35 final size:35
Alignment explanation
Indices: 100993--101067 Score: 116
Period size: 35 Copynumber: 2.1 Consensus size: 35
100983 AAAATACTTT
* *
100993 AATTTAGGGTTTAGAATATAATT-AAAGTATTTTGG
1 AATTTAAGGTTTAGAATATAATTGAAA-TATTTTAG
101028 AATTTAAGGTTTAGAATATAATTGAAATATTTTAG
1 AATTTAAGGTTTAGAATATAATTGAAATATTTTAG
101063 AATTT
1 AATTT
101068 TGAAAATGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 34 0.92
36 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (35 bp):
AATTTAAGGTTTAGAATATAATTGAAATATTTTAG
Found at i:106978 original size:66 final size:65
Alignment explanation
Indices: 106841--107001 Score: 216
Period size: 66 Copynumber: 2.5 Consensus size: 65
106831 TGCACTAAGA
* * * ** ***
106841 GTGCATCGATGCATGAAGTGCATTCGATG-TTTCAAAATAGCCTGAGTGCATCGATGCATGTCTT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAAAAAACTGAGTGCATCGATGCATGGAAT
*
106905 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAAAAACTGAGTGCATCGATGCATGGAA
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAAAAAACTGAGTGCATCGATGCATGGAA
106970 T
65 T
*
106971 GTGCATCGATGCATAAAAGGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
107002 CAATTTATTC
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
64 27 0.32
65 5 0.06
66 53 0.62
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAAAAAACTGAGTGCATCGATGCATGGAAT
Found at i:108824 original size:17 final size:16
Alignment explanation
Indices: 108793--108825 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
108783 TTTTTGTTGG
108793 AATAGTTCATTTATAT
1 AATAGTTCATTTATAT
*
108809 AATAGTTC-TTTTTAT
1 AATAGTTCATTTATAT
108824 AA
1 AA
108826 AACTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (16 bp):
AATAGTTCATTTATAT
Found at i:115832 original size:24 final size:25
Alignment explanation
Indices: 115783--115841 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
115773 AGTTTTTGCA
115783 CCGAAGTG-CCGCGTAGAAATTTGTC
1 CCGAAG-GACCGCGTAGAAATTTGTC
115808 CCGAAGGACCGCGTAG-AATTTGTC
1 CCGAAGGACCGCGTAGAAATTTGTC
*
115832 CTGAAGGACC
1 CCGAAGGACC
115842 ACATATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.20
Consensus pattern (25 bp):
CCGAAGGACCGCGTAGAAATTTGTC
Found at i:116077 original size:30 final size:31
Alignment explanation
Indices: 116033--116098 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
116023 ATTTATATTG
*
116033 CATAGACATATCA-TTTCCATACCTTTATCA
1 CATAAACATATCATTTTCCATACCTTTATCA
*
116063 CATAAACATTTCATTTTCCATACCTTTATCA
1 CATAAACATATCATTTTCCATACCTTTATCA
116094 CATAA
1 CATAA
116099 TTCATATAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 11 0.33
31 22 0.67
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.38
Consensus pattern (31 bp):
CATAAACATATCATTTTCCATACCTTTATCA
Found at i:122648 original size:25 final size:24
Alignment explanation
Indices: 122589--122673 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 24
122579 CTCGTATAAA
* * *
122589 TTGTACCGAAGTGTCGCGTAGAGT
1 TTGTCCCGAAGTGCCGCGTAGAAT
*
122613 TTTTGCACCGAAGTGCCGCGTAGAAAT
1 TTGT-C-CCGAAGTGCCGCGTAG-AAT
122640 TTGTCCCGAAG-GACCGCGTAGAAT
1 TTGTCCCGAAGTG-CCGCGTAGAAT
*
122664 TTGTCTCGAA
1 TTGTCCCGAA
122674 TGACCACATA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
24 16 0.31
25 14 0.27
26 16 0.31
27 5 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (24 bp):
TTGTCCCGAAGTGCCGCGTAGAAT
Found at i:125278 original size:103 final size:103
Alignment explanation
Indices: 125156--125361 Score: 403
Period size: 103 Copynumber: 2.0 Consensus size: 103
125146 TTCGTAGTAC
125156 ACCAAGTCAATTGTAACGGAACAACAGAAATCAAGAACCGAGATGATGGATCCATTTACAAGGTG
1 ACCAAGTCAATTGTAACGGAACAACAGAAATCAAGAACCGAGATGATGGATCCATTTACAAGGTG
125221 AATGGTCAGAGACTAAAGGAATACAAAAGAATACCAGT
66 AATGGTCAGAGACTAAAGGAATACAAAAGAATACCAGT
*
125259 ACCAATTCAATTGTAACGGAACAACAGAAATCAAGAACCGAGATGATGGATCCATTTACAAGGTG
1 ACCAAGTCAATTGTAACGGAACAACAGAAATCAAGAACCGAGATGATGGATCCATTTACAAGGTG
125324 AATGGTCAGAGACTAAAGGAATACAAAAGAATACCAGT
66 AATGGTCAGAGACTAAAGGAATACAAAAGAATACCAGT
125362 CATGTGTGAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.18
Consensus pattern (103 bp):
ACCAAGTCAATTGTAACGGAACAACAGAAATCAAGAACCGAGATGATGGATCCATTTACAAGGTG
AATGGTCAGAGACTAAAGGAATACAAAAGAATACCAGT
Found at i:131437 original size:24 final size:26
Alignment explanation
Indices: 131409--131460 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
131399 AAAATAGATT
*
131409 TTTTGTAAAT-AAATTAAT-TTTTTA
1 TTTTGTAAATAAAAATAATATTTTTA
*
131433 TTTTGTAATTAAAAATAATATTTTTA
1 TTTTGTAAATAAAAATAATATTTTTA
131459 TT
1 TT
131461 GTTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 9 0.38
25 7 0.29
26 8 0.33
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTTGTAAATAAAAATAATATTTTTA
Found at i:133176 original size:28 final size:28
Alignment explanation
Indices: 133136--133192 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
133126 CTGCTTTGCT
133136 ATATGATACTGAATGTTGGTTTAACAAG
1 ATATGATACTGAATGTTGGTTTAACAAG
133164 ATATGATACTGAATGTTGGTTTAACAAG
1 ATATGATACTGAATGTTGGTTTAACAAG
133192 A
1 A
133193 AGTGACATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (28 bp):
ATATGATACTGAATGTTGGTTTAACAAG
Found at i:141055 original size:59 final size:59
Alignment explanation
Indices: 140963--141083 Score: 181
Period size: 59 Copynumber: 2.1 Consensus size: 59
140953 TGAGGGTTGG
** *
140963 TTAGAGCCATAATATCGAGTTTGTCTTTTCATTGCGACTAGGAGGGTTCGATAGGACAC
1 TTAGAGCCATAATATAAAGTTTGTCTTTTCATTGCGACTAGGAGGGTTCAATAGGACAC
* *
141022 TTAGAGCCATATTATAAAGTTT-TCCTTTTCATTGCGACTAGGAGGGTTCAATAGGATAC
1 TTAGAGCCATAATATAAAGTTTGT-CTTTTCATTGCGACTAGGAGGGTTCAATAGGACAC
141081 TTA
1 TTA
141084 TCTATCTATT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 1 0.02
59 55 0.98
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (59 bp):
TTAGAGCCATAATATAAAGTTTGTCTTTTCATTGCGACTAGGAGGGTTCAATAGGACAC
Found at i:163079 original size:939 final size:936
Alignment explanation
Indices: 160939--163747 Score: 3947
Period size: 937 Copynumber: 3.0 Consensus size: 936
160929 ATGGTTCTAA
** *
160939 GGTGACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTGTTGAGGTAAGGTTGCTGTCAT
1 GGTGACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTACTGAGGGAAGGTTGCTGTCAT
* * * *
161004 GTATTGCTTGAGGATAAGAAAACGCTTACG-TTTGGGGTGTGATAACTCTCCAAAAGA-TATATT
66 GTATTGCTTAAGGAAAAGAAAA-ACTTATGTTTTGGGGTGTGATAACTCTCCAAAAGAGT-TATT
* *
161067 ATTTATATCCTTTTCTACTTAGGTTTGAGCTTTTA-TTTAGCATATTATGATCATATTTAGAGTG
129 ATTTATAGCC-TTTGTACTTAGGTTTGAGCTTTTACTTTAGCATATTATGATCATATTTAGAGTG
* *
161131 GTTTTAATTCATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATG
193 GTTTTAGTTAATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATG
* * * * * * *
161196 ATATTTTGATATGTTATTGTTACCATGATGCTATGACATTCTCTAATGCTACATATATTGATATG
258 ATATTTTGATGTGTTATTGTTACCCTGATGTTGTGACATTCTCT-ATGATACATAAATTGATGTG
* * * *
161261 -AGCTGGTGTGAGATATGATTATTAGGTTGGT-ACTGAAGCAATCAATGCATGGGAAGAAAGCTG
322 CA-CTGGTGTGAGATAGGATTATTGGGTTGGTGA-TGTAGCAATCAATGCATGGGTAGAAAGCTG
* *
161324 TTGATAGCTGGACAAAATCTCGTTATGGAAAAGATTGAAAAGTAGAAATAAATCTTATTGGAAAA
385 TTGATAGCTGGACAAAATCTCGTTATGGAAAGGATTGAAAAGTAGAAATAAATCTTAATGGAAAA
** *
161389 GGAGTCTCAATTTAATACGGGCTTAAATTTTACTTTTTAGGGTTTTTAATTATTTTATAAAGGAG
450 GGAGTCTCAATTTAATGTGGGCTTAAATTTTACTTTTTAGGGTTTTTAATTATTTTATAAAGGAA
* * * *
161454 GCGGCTGCACTTAATTAAAGGAGAGCTTTTTAGGGTTTATTTTATTC-TTTCTTGTCTCCATAAT
515 GCGGCTGCACTTAATAAAAGGAGAGTTTTTTAGGGTTTATTTTATTCTTTTCTTTTCTCCACAAT
* *
161518 TAGCCATGGTTGCTTAGGTATATTTTTGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAAC
580 TAGCCATGGTCGCTTAGGTATATTTTGGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAAC
* * * * * *
161583 ATTGAGAGGTGGTGGCTGGTGATGGACGAGATCATCAACGAAAACAACGATAATATAATTCTGAG
645 ATCGAGAAGTGGTGGCTGGTGATCGACGAGAGCATCAACGACAACAACGATAAAATAATTCTGAG
*
161648 ATAGGGTTTTATTTTTGTTTAGTTGAAATTCTCTTTAATTTATTTGAGATTTTTTAAACCTTGGA
710 ATAGGGTTTTATTTTTGTTTAGTTGAAATACTCTTTAATTTATTTGAGATTTTTTAAACCTTGGA
* ** *
161713 TGCTATATTTTTAAATATATTTTGATTTTCATGTTAATTAATTTTGTTTATTGATTCGATTGGGG
775 TGCTATATTTTTAAATATATTTTGAGTTTCATGTTAATTAATTTTGTCCATTGATTCGATTGGTG
*
161778 TTTGCTTAGTTTATTAAGGTATTTAGTATAGAAATATATATTTGCTTGGTTTAATTAATTTTGAC
840 TTTGCTTAGTTTATTAAGGTATTTAGTATAGAAATATATATTTGCTTGGTTTAATTAATTTTGTC
* *
161843 CATTGATTCGATTGCAAGAGCAACATTTCAGT
905 CATTGATTCGATTGCAAGAGCAACGTTTCAAT
* * * *
161875 GATAACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTACTGAGGGAAGGTCGTTGTCAT
1 GGTGACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTACTGAGGGAAGGTTGCTGTCAT
* *
161940 GTATTGCTTAAGGAAAAGTAAACACTTATGTTTGGGGGTGTGATAACTCTCCAAAAGAGTTATTA
66 GTATTGCTTAAGGAAAAG-AAAAACTTATGTTTTGGGGTGTGATAACTCTCCAAAAGAGTTATTA
* *
162005 TTTATAGTCTTTGTACTTAGGTTTGAGCTTTTACTTTAGCATATTAGGATCATATTTAGAGTGGT
130 TTTATAGCCTTTGTACTTAGGTTTGAGCTTTTACTTTAGCATATTATGATCATATTTAGAGTGGT
162070 TTTAGTTAATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATGAT
195 TTTAGTTAATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATGAT
* * *
162135 ATTTTGATGTGTTTTTATTACCCTAATGTTGTGACATTCTCTGATGATACATAAATTGATGTGCA
260 ATTTTGATGTGTTATTGTTACCCTGATGTTGTGACATTCTCT-ATGATACATAAATTGATGTGCA
*
162200 CTGGTGTGAGATAGGATTATTGGGTTGGTGATGTAGCAATCAATGCATGGGTAGAAAGTTGTTGA
324 CTGGTGTGAGATAGGATTATTGGGTTGGTGATGTAGCAATCAATGCATGGGTAGAAAGCTGTTGA
* * * * *
162265 TAGCTGGACATAATCTTGTTATAGAAAGGACTGAAAAGTAGAAATAAATCTTAATGG-AAAGAAG
389 TAGCTGGACAAAATCTCGTTATGGAAAGGATTGAAAAGTAGAAATAAATCTTAATGGAAAAGGAG
* *
162329 TCTCAATTTAATGTAGGCTTAAATTTTACTTTTTAGGGTTTTTAATTATTTTATAAAGGAAGTGG
454 TCTCAATTTAATGTGGGCTTAAATTTTACTTTTTAGGGTTTTTAATTATTTTATAAAGGAAGCGG
* *
162394 TTGCACTTAATAAAAGGAGAGTTTTTTAGGGTTTGTTTTATTCTTTTCTTTTCTCCACAATTAGC
519 CTGCACTTAATAAAAGGAGAGTTTTTTAGGGTTTATTTTATTCTTTTCTTTTCTCCACAATTAGC
**
162459 CATTATCGCTTAGGTATATTTTGGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAACATCG
584 CATGGTCGCTTAGGTATATTTTGGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAACATCG
*
162524 AGAAGTGGTGGCTGGTGATCGACGAGAGCATCAACGACAGCAACGATAAAATAATTCTGAGATAG
649 AGAAGTGGTGGCTGGTGATCGACGAGAGCATCAACGACAACAACGATAAAATAATTCTGAGATAG
* * *
162589 GGTTTTATTTTTGTTTAGTCGAAATACTCTTTAATTTGTTTGAGATTTTTTAAGCCTTGGATGCT
714 GGTTTTATTTTTGTTTAGTTGAAATACTCTTTAATTTATTTGAGATTTTTTAAACCTTGGATGCT
* *
162654 ATAATTGTTAAATATATTTTGAGTTTCATGTTAATTAATTTTGTCCATTGATTTGATTGGTGTTT
779 AT-ATTTTTAAATATATTTTGAGTTTCATGTTAATTAATTTTGTCCATTGATTCGATTGGTGTTT
*
162719 GCTTAGTTTTATTAAGGTATTTAGTATATAAATATATATTTGCTTGGTTTAATTAATTTTGTCCA
843 GCTTAG-TTTATTAAGGTATTTAGTATAGAAATATATATTTGCTTGGTTTAATTAATTTTGTCCA
*
162784 TTGATTCGATTGCAAGAGAAACGTTTCAAT
907 TTGATTCGATTGCAAGAGCAACGTTTCAAT
* * *
162814 GGTGGCAAGTGCAAAGAAAGTGTAAGAGATATGTTGTCTAATTACTAAGGGAAGGTTGCTGTCAT
1 GGTGACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTACTGAGGGAAGGTTGCTGTCAT
*
162879 GTATTGCTTAAGGACAAGCAAAAACTTATGTTTTGGGGTGTGATAACTCTCCAAAAGAGTTATTA
66 GTATTGCTTAAGGAAAAG-AAAAACTTATGTTTTGGGGTGTGATAACTCTCCAAAAGAGTTATTA
*
162944 TTTATAGCCTTTGTACTTAGGTTTGAGCTTGTACTTTAGCATATTATGATCATATTTAGAGTGGT
130 TTTATAGCCTTTGTACTTAGGTTTGAGCTTTTACTTTAGCATATTATGATCATATTTAGAGTGGT
* * * * * *
163009 TGTAGTTAATTTTGCATTACATACATTGTTGGGATTGAGATGGTAATTGTTGGATTAATTATGAT
195 TTTAGTTAATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATGAT
* * * *
163074 ATTTTGTTGTGATATTGTTACTCTGATGTTGTGACATTCTC--TGATACTATAAATATTATTGTG
260 ATTTTGATGTGTTATTGTTACCCTGATGTTGTGACATTCTCTATGATAC-ATAAAT-TGA-TGTG
* * * * * * ** * *
163137 CGCTGGTGCGAGACAGGATTATTGGGTCGGTGCTGTAACAATCAATGTGTGGGTCGAAAGCTATT
322 CACTGGTGTGAGATAGGATTATTGGGTTGGTGATGTAGCAATCAATGCATGGGTAGAAAGCTGTT
* * * * *
163202 GACAGCTGGACAGAATCTCATTATGGAAAGTATTGAAAAGTAGAAAAAAAT-TATAATGGAAAAG
387 GATAGCTGGACAAAATCTCGTTATGGAAAGGATTGAAAAGTAGAAATAAATCT-TAATGGAAAAG
* ** * * *
163266 GAGTCTCAATTTAATGTGGGCTTAAATTCTACTTTTTAGTTTTTTTTAATTATTATATAAAAGAT
451 GAGTCTCAATTTAATGTGGGCTTAAATTTTACTTTTTAG-GGTTTTTAATTATTTTATAAAGGAA
* * * * *
163331 GCGGCTGTACTTAATTAAAA-TAGAGTTTTTTAGGGTTTATTTTATTCTTTTCTTTTCACTACCA
515 GCGGCTGCACTTAA-TAAAAGGAGAGTTTTTTAGGGTTTATTTTATTCTTTTCTTTTCTCCACAA
*** * * * * * * ** * * *
163395 TTAATAATGGCCGCTTTGGCAAATTTTGGAGAAAGAGTAGCAGTTAGACATGAAGGCAAAGTTAG
579 TTAGCCATGGTCGCTTAGGTATATTTTGGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAA
* * ** * * * *
163460 CATCAAG-AGTAG-CACT--TAATCGGCGAGAGCATCAATGACAACAATGATAAAATAATTCTGA
644 CATCGAGAAGTGGTGGCTGGTGATCGACGAGAGCATCAACGACAACAACGATAAAATAATTCTGA
* * * * *
163521 GATGGGGTTTTATTTTTGTTTAGTTGAAACACTCTTTAATTTTTTTGGGATTTGTTAAACCTTGG
709 GATAGGGTTTTATTTTTGTTTAGTTGAAATACTCTTTAATTTATTTGAGATTTTTTAAACCTTGG
* * * *
163586 ATGGTATATTTTTAAATATATTTTGAGTTTCATTTTAATTAATTTTTTCCATTGATTCGATTGAT
774 ATGCTATATTTTTAAATATATTTTGAGTTTCATGTTAATTAATTTTGTCCATTGATTCGATTGGT
* * * * * *
163651 GTTTTCTTGGATTTATTAAGGCATTTAGTATAGAAATATATGTTTTCTTGGTTTAATTAATTTTT
839 GTTTGCTTAG-TTTATTAAGGTATTTAGTATAGAAATATATATTTGCTTGGTTTAATTAATTTTG
163716 TCCATTGATTCGATTGCAAGAGCAACGTTTCA
903 TCCATTGATTCGATTGCAAGAGCAACGTTTCA
163748 GTATAAAGAG
Statistics
Matches: 1669, Mismatches: 188, Indels: 32
0.88 0.10 0.02
Matches are distributed among these distances:
936 354 0.21
937 606 0.36
938 68 0.04
939 467 0.28
940 44 0.03
941 125 0.07
942 5 0.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (936 bp):
GGTGACAAGTGCAAAGAAAGTGTAAGAGTTATGTTGTCTAATTACTGAGGGAAGGTTGCTGTCAT
GTATTGCTTAAGGAAAAGAAAAACTTATGTTTTGGGGTGTGATAACTCTCCAAAAGAGTTATTAT
TTATAGCCTTTGTACTTAGGTTTGAGCTTTTACTTTAGCATATTATGATCATATTTAGAGTGGTT
TTAGTTAATTTTGCATTACATGCATTGTTGGGAGTGAGTTGGTAATTTTTGAATTAATTATGATA
TTTTGATGTGTTATTGTTACCCTGATGTTGTGACATTCTCTATGATACATAAATTGATGTGCACT
GGTGTGAGATAGGATTATTGGGTTGGTGATGTAGCAATCAATGCATGGGTAGAAAGCTGTTGATA
GCTGGACAAAATCTCGTTATGGAAAGGATTGAAAAGTAGAAATAAATCTTAATGGAAAAGGAGTC
TCAATTTAATGTGGGCTTAAATTTTACTTTTTAGGGTTTTTAATTATTTTATAAAGGAAGCGGCT
GCACTTAATAAAAGGAGAGTTTTTTAGGGTTTATTTTATTCTTTTCTTTTCTCCACAATTAGCCA
TGGTCGCTTAGGTATATTTTGGGGAAATAGTAGCACCTGGACATGAAGGCAAAGTCAACATCGAG
AAGTGGTGGCTGGTGATCGACGAGAGCATCAACGACAACAACGATAAAATAATTCTGAGATAGGG
TTTTATTTTTGTTTAGTTGAAATACTCTTTAATTTATTTGAGATTTTTTAAACCTTGGATGCTAT
ATTTTTAAATATATTTTGAGTTTCATGTTAATTAATTTTGTCCATTGATTCGATTGGTGTTTGCT
TAGTTTATTAAGGTATTTAGTATAGAAATATATATTTGCTTGGTTTAATTAATTTTGTCCATTGA
TTCGATTGCAAGAGCAACGTTTCAAT
Found at i:166672 original size:21 final size:21
Alignment explanation
Indices: 166646--166692 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
166636 TTGACAAAGT
166646 TTGAGTGTTAAATGGTAAACA
1 TTGAGTGTTAAATGGTAAACA
166667 TTGAGTGTTAAATGGTAAACA
1 TTGAGTGTTAAATGGTAAACA
166688 TTGAG
1 TTGAG
166693 AAAGTGAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (21 bp):
TTGAGTGTTAAATGGTAAACA
Found at i:171089 original size:20 final size:19
Alignment explanation
Indices: 171064--171114 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
171054 ACCCTTTTAA
171064 TATTTTTTTATTTGATTAT
1 TATTTTTTTATTTGATTAT
* *
171083 TATTTTTTTATTTTATTTT
1 TATTTTTTTATTTGATTAT
171102 TATTATTTTTATT
1 TATT-TTTTTATT
171115 GTTTACACGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 21 0.72
20 8 0.28
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (19 bp):
TATTTTTTTATTTGATTAT
Found at i:171093 original size:11 final size:11
Alignment explanation
Indices: 171066--171111 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
171056 CCTTTTAATA
171066 TTTTT-TTATT
1 TTTTTATTATT
**
171076 TGATTATTATT
1 TTTTTATTATT
171087 TTTTTATT-TT
1 TTTTTATTATT
171097 ATTTTTATTATT
1 -TTTTTATTATT
171109 TTT
1 TTT
171112 ATTGTTTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.17
11 22 0.76
12 2 0.07
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTTATTATT
Found at i:171107 original size:14 final size:14
Alignment explanation
Indices: 171068--171110 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
171058 TTTTAATATT
171068 TTTTTATTTGATTATTA
1 TTTTTA-TT-ATT-TTA
171085 TTTTT-TTATTTTA
1 TTTTTATTATTTTA
171098 TTTTTATTATTTT
1 TTTTTATTATTTT
171111 TATTGTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.32
14 10 0.40
15 2 0.08
17 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (14 bp):
TTTTTATTATTTTA
Found at i:171119 original size:22 final size:21
Alignment explanation
Indices: 171068--171119 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
171058 TTTTAATATT
*
171068 TTTTTATTTGATTATTATTTTTT
1 TTTTTATTT--TTATTATTTTTA
171091 TATTTTATTTTTATTATTTTTA
1 T-TTTTATTTTTATTATTTTTA
171113 TTGTTTA
1 TT-TTTA
171120 CACGTTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 16 0.62
23 1 0.04
24 8 0.31
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTATTTTTATTATTTTTA
Found at i:171134 original size:2 final size:2
Alignment explanation
Indices: 171127--171174 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
171117 TTACACGTTA
171127 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
171169 AT AT AT
1 AT AT AT
171175 TATCAACTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:171402 original size:14 final size:13
Alignment explanation
Indices: 171383--171478 Score: 68
Period size: 14 Copynumber: 6.8 Consensus size: 13
171373 TATATATTAT
171383 TTTTATTATTTTTC
1 TTTTATT-TTTTTC
*
171397 TTTTATTTTTTTA
1 TTTTATTTTTTTC
*
171410 TTTTGTTGTTTTAT-
1 TTTTATT-TTTT-TC
171424 TTTTATTTCTGTTTC
1 TTTTATTT-T-TTTC
*
171439 TTTTCTATTTTTTC
1 TTTTAT-TTTTTTC
* *
171453 TTTTTTTATTTTTA
1 TTTTATT-TTTTTC
171467 TTCTTATTTTTT
1 TT-TTATTTTTT
171479 CTTATTCAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
13 13 0.19
14 39 0.58
15 13 0.19
16 2 0.03
ACGTcount: A:0.10, C:0.06, G:0.03, T:0.80
Consensus pattern (13 bp):
TTTTATTTTTTTC
Found at i:171466 original size:44 final size:40
Alignment explanation
Indices: 171379--171478 Score: 110
Period size: 43 Copynumber: 2.4 Consensus size: 40
171369 TATATATATA
171379 TTATTTTTATTATTTTTCTTTTATTTTTTTATTTTGTTGTT
1 TTATTTTTATT-TTTTTCTTTTATTTTTTTATTTTGTTGTT
* * * *
171420 TTATTTTTATTTCTGTTTCTTTTCTATTTTTTCTTTTTTTATTT
1 TTATTTTTATTT-T-TTTCTTTTAT-TTTTTTATTTTGTT-GTT
*
171464 TTATTCTTATTTTTT
1 TTATTTTTATTTTTT
171479 CTTATTCAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
40 1 0.02
41 12 0.24
42 11 0.22
43 13 0.26
44 13 0.26
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (40 bp):
TTATTTTTATTTTTTTCTTTTATTTTTTTATTTTGTTGTT
Found at i:171478 original size:20 final size:19
Alignment explanation
Indices: 171379--171478 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 19
171369 TATATATATA
*
171379 TTATTTTTATTATTTTTCTT
1 TTATTTTTATTCTTTTT-TT
*
171399 TTATTTTTTTATT-TTGTTGTT
1 TTA--TTTTTATTCTT-TTTTT
171420 TTATTTTTATTTCTGTTTCTTT
1 TTATTTTTA-TTCT-TTT-TTT
171442 TCTA-TTTT-TTC--TTTTT
1 T-TATTTTTATTCTTTTTTT
*
171458 TTATTTTTATTCTTATTTT
1 TTATTTTTATTCTTTTTTT
171477 TT
1 TT
171479 CTTATTCAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 25
0.70 0.03 0.27
Matches are distributed among these distances:
15 2 0.03
16 8 0.12
17 5 0.08
19 12 0.18
20 8 0.12
21 10 0.15
22 18 0.28
23 2 0.03
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (19 bp):
TTATTTTTATTCTTTTTTT
Found at i:171550 original size:18 final size:17
Alignment explanation
Indices: 171527--171560 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
171517 TTGTAACATT
*
171527 TTATTTGTTTTACTTATA
1 TTATTTATTTTA-TTATA
171545 TTATTTATTTTATTAT
1 TTATTTATTTTATTAT
171561 TCTTTTTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (17 bp):
TTATTTATTTTATTATA
Found at i:174348 original size:95 final size:94
Alignment explanation
Indices: 174168--174430 Score: 393
Period size: 95 Copynumber: 2.7 Consensus size: 94
174158 CAAATCATAA
* * *
174168 TATTATACATATACAATAAAGCTTGAGTTATCCCTCTAGGGCAATTGGTTAAACCCCCGGCTTTA
1 TATTATA-ATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAAGCCCCGGCTTTA
174233 TGGATAATATTCAGCTAGCCTGATAAAGGT
65 TGGATAATATTCAGCTAGCCTGATAAAGGT
*
174263 TATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCTCGGCTTTA
1 TATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAA-GCCCCGGCTTTA
174328 TGGATAATATTCAGCTAGCCTGATAAAGGT
65 TGGATAATATTCAGCTAGCCTGATAAAGGT
* **
174358 GATTATAATAT-CTATATAATGATATTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGC
1 TATTATAATATAC-A-ATAA--AGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAA-GCCCCGGC
174422 TTTATGGAT
61 TTTATGGAT
174431 CCAACTAGCC
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
94 44 0.29
95 58 0.38
96 4 0.03
98 48 0.31
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (94 bp):
TATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAAGCCCCGGCTTTAT
GGATAATATTCAGCTAGCCTGATAAAGGT
Found at i:175537 original size:84 final size:88
Alignment explanation
Indices: 175436--175604 Score: 229
Period size: 84 Copynumber: 1.9 Consensus size: 88
175426 AGAGTTAATT
* *
175436 TCAACTTCACAGCGAAGGATATTGGACTCGAAATGACACAA-TA-TTG-G-ATTTCAACTTCACA
1 TCAACTTCACAGCGAAGGATATTGAACTCGAAACGACACAATTATTTGAGAATTTCAACTTCACA
175497 ACGAAGGATATCCAATTCAAAGC
66 ACGAAGGATATCCAATTCAAAGC
* *
175520 TCAACTTCACAGTGAAGGATATTGAACTCGAAGCGACACAATTTATTTGAGATTCAATTTCAACT
1 TCAACTTCACAGCGAAGGATATTGAACTCGAAACGACACAA-TTATTTGAG----AATTTCAACT
175585 TCACAACGAAGGATATCCAA
61 TCACAACGAAGGATATCCAA
175605 CTTAAACTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
84 37 0.51
86 2 0.03
87 3 0.04
88 1 0.01
93 29 0.40
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (88 bp):
TCAACTTCACAGCGAAGGATATTGAACTCGAAACGACACAATTATTTGAGAATTTCAACTTCACA
ACGAAGGATATCCAATTCAAAGC
Found at i:175856 original size:120 final size:120
Alignment explanation
Indices: 175636--175856 Score: 336
Period size: 120 Copynumber: 1.8 Consensus size: 120
175626 CAATACTTGG
* *
175636 ATTTCAACTTCACGACGAATGATATCCAATTCAAGGCTCAACTTCAAAATGAAGGGGCCATCCAC
1 ATTTCAACTTCACGACGAAAGATATCCAATTCAAGGCTCAACTTCAAAACGAAGGGGCCATCCAC
* * *
175701 GATTTCAACTTCACGATGAAAGATATTGTGCCACAACCAACCATCGTAAGATTGA
66 AATTTCAACTTCACGACGAAAGATATCGTGCCACAACCAACCATCGTAAGATTGA
* * **
175756 ATTTCAACTTCACGACGAAAGATATCTAATTTAAGGCTCAACTTCACGACGAAGGGGCCATCCAC
1 ATTTCAACTTCACGACGAAAGATATCCAATTCAAGGCTCAACTTCAAAACGAAGGGGCCATCCAC
*
175821 AATTTCAACTTCACGACG-AAGGTATCGTGCTCACAA
66 AATTTCAACTTCACGACGAAAGATATCGTGC-CACAA
175857 GTAGTATTGG
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 10 0.11
120 80 0.89
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (120 bp):
ATTTCAACTTCACGACGAAAGATATCCAATTCAAGGCTCAACTTCAAAACGAAGGGGCCATCCAC
AATTTCAACTTCACGACGAAAGATATCGTGCCACAACCAACCATCGTAAGATTGA
Found at i:176168 original size:124 final size:124
Alignment explanation
Indices: 175999--176224 Score: 382
Period size: 124 Copynumber: 1.8 Consensus size: 124
175989 TACTTACACA
* *
175999 AGATCGGATTTCAACTTCACGACGAAGGATATCCAATTCGAGGCTCAACTTCACAACGAATGGGC
1 AGATCGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGC
*
176064 CATCCACGATTTCAACTTCACGAA-GAAGGATATCGTGCTCACCAACAACATTCATCTTT
66 CATCCACGATTTCAACTTCAC-AACAAAGGATATCGTGCTCACCAACAACATTCATCTTT
* * *
176123 AGATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACGACGAAGGGGT
1 AGATCGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGC
176188 CATCCACGATTTCAACTTCACAACAAAGGATATCGTG
66 CATCCACGATTTCAACTTCACAACAAAGGATATCGTG
176225 GCGAGAAGGG
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
123 2 0.02
124 93 0.98
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (124 bp):
AGATCGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGC
CATCCACGATTTCAACTTCACAACAAAGGATATCGTGCTCACCAACAACATTCATCTTT
Found at i:176669 original size:86 final size:84
Alignment explanation
Indices: 176224--176665 Score: 578
Period size: 84 Copynumber: 5.2 Consensus size: 84
176214 AGGATATCGT
* * * * **
176224 GGCGAGAAGGGTTGTCTGCCAACTAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGACGCAT
1 GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
176289 CATTTGCAGCATAGCTCAA
66 CATTTGCAGCATAGCTCAA
* * * *
176308 GGTGAGAAGGGTTATCTGTCAACAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACAT
1 GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
* *
176373 CATTTGCAGCATATCTTAA
66 CATTTGCAGCATAGCTCAA
* * * * *
176392 GACGAGAAGGGCTATCTGCCAAAAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGGCTTAT
1 GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
176457 CATTTGCAGCATAGCTCAA
66 CATTTGCAGCATAGCTCAA
* * * *
176476 GGCGAGAAGGGTTATCTGCCAACAAAAGACATCCGAGTTCAATTACACTCAGTTCAAAGGCATAT
1 GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
*
176541 CAAATTTACAGCATAGCTCAA
66 C--ATTTGCAGCATAGCTCAA
* * * * * *
176562 GGTGATAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTGCATTCAGCTCAGAGGCATAT
1 GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
*
176627 CAAATTTACAGCATAGCTCAA
66 C--ATTTGCAGCATAGCTCAA
*
176648 GGCAAGAAGGGTTATCTG
1 GGCGAGAAGGGTTATCTG
176666 TCAAAACTGA
Statistics
Matches: 314, Mismatches: 42, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
84 206 0.66
86 108 0.34
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (84 bp):
GGCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCATAT
CATTTGCAGCATAGCTCAA
Found at i:178266 original size:14 final size:14
Alignment explanation
Indices: 178247--178302 Score: 69
Period size: 14 Copynumber: 4.0 Consensus size: 14
178237 GATTTAACCC
178247 TTTTATTATTATTT
1 TTTTATTATTATTT
*
178261 TTTTATTATTAATT
1 TTTTATTATTATTT
178275 TTTTATT-TTATTT
1 TTTTATTATTATTT
* *
178288 CTATTATTTTTATTT
1 -TTTTATTATTATTT
178303 ACACGTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
13 5 0.14
14 26 0.70
15 6 0.16
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTATTATTT
Found at i:178318 original size:2 final size:2
Alignment explanation
Indices: 178311--178344 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
178301 TTACACGTTA
178311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
178345 TACCAACTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:178574 original size:19 final size:18
Alignment explanation
Indices: 178527--178614 Score: 72
Period size: 19 Copynumber: 4.6 Consensus size: 18
178517 TATGTATATA
178527 TTATTTTTATTATTTTGCTT
1 TTATTTTTATT-TTTTG-TT
178547 TTATTTTTTTATTTTGTTGTT
1 TTA--TTTTTATTTT-TTGTT
*
178568 TTATTTTTATTTCTT-TT
1 TTATTTTTATTTTTTGTT
* *
178585 CTATTTTT-TTTTATCTTTT
1 TTATTTTTATTTT-T-TGTT
178604 TTATTTTTATT
1 TTATTTTTATT
178615 CTTATTCATT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
16 3 0.05
17 10 0.18
18 3 0.05
19 18 0.32
20 5 0.09
21 7 0.12
22 11 0.19
ACGTcount: A:0.12, C:0.05, G:0.03, T:0.80
Consensus pattern (18 bp):
TTATTTTTATTTTTTGTT
Found at i:178577 original size:41 final size:42
Alignment explanation
Indices: 178527--178626 Score: 107
Period size: 41 Copynumber: 2.4 Consensus size: 42
178517 TATGTATATA
*
178527 TTATTTTTATTATTTTGCTTTTATTTTTTTAT-TTTGTT-GTT
1 TTATTTTTATTATTTTGCTATT-TTTTTTTATCTTTGTTAGTT
* * *
178568 TTATTTTTATT-TCTTTTCTATTTTTTTTTATCTTTTTTATTT
1 TTATTTTTATTAT-TTTGCTATTTTTTTTTATCTTTGTTAGTT
*
178610 TTATTCTTATTCATTTT
1 TTATTTTTATT-ATTTT
178627 TTTTGCTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
40 10 0.20
41 23 0.47
42 12 0.24
43 3 0.06
44 1 0.02
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.78
Consensus pattern (42 bp):
TTATTTTTATTATTTTGCTATTTTTTTTTATCTTTGTTAGTT
Found at i:178595 original size:11 final size:10
Alignment explanation
Indices: 178550--178731 Score: 57
Period size: 10 Copynumber: 17.4 Consensus size: 10
178540 TTTGCTTTTA
178550 TTTTTTTATT
1 TTTTTTTATT
* *
178560 TTGTTGT-TT
1 TTTTTTTATT
*
178569 TATTTTTATT
1 TTTTTTTATT
*
178579 TCTTTTCTATT
1 T-TTTTTTATT
178590 TTTTTTTA-T
1 TTTTTTTATT
*
178599 CTTTTTTATT
1 TTTTTTTATT
178609 TTTATTCTTA-T
1 TTT-TT-TTATT
**
178620 TCATTTT-TT
1 TTTTTTTATT
**
178629 TTGCTTTATT
1 TTTTTTTATT
*
178639 TTTATTTATT
1 TTTTTTTATT
* * *
178649 TATTTTAACAT
1 TTTTTTTA-TT
* *
178660 TTTATTTGTT
1 TTTTTTTATT
* *
178670 TTACTTATATT
1 TT-TTTTTATT
178681 ATTTATTTTATT
1 -TTT-TTTTATT
178693 ATTCTTTTTATCT
1 -TT-TTTTTAT-T
* *
178706 TTTTCTTGTT
1 TTTTTTTATT
178716 TTGTTTATTATT
1 TT-TTT-TTATT
178728 TTTT
1 TTTT
178732 ATATTTAGTA
Statistics
Matches: 121, Mismatches: 36, Indels: 29
0.65 0.19 0.16
Matches are distributed among these distances:
9 21 0.17
10 40 0.33
11 30 0.25
12 28 0.23
13 2 0.02
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:178629 original size:19 final size:18
Alignment explanation
Indices: 178571--178630 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 18
178561 TGTTGTTTTA
178571 TTTTTATTTCTTTTCTATTT
1 TTTTTA-TTCTTTTC-ATTT
*
178591 TTTTT-TATCTTTT--TTA
1 TTTTTAT-TCTTTTCATTT
178607 TTTTTATTCTTATTCATTT
1 TTTTTATTCTT-TTCATTT
178626 TTTTT
1 TTTTT
178631 GCTTTATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
16 11 0.33
17 3 0.09
18 1 0.03
19 13 0.39
20 5 0.15
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTATTCTTTTCATTT
Found at i:178636 original size:24 final size:24
Alignment explanation
Indices: 178609--178654 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
178599 CTTTTTTATT
*
178609 TTTATTCTTATTCATTTTTTTTGC
1 TTTATTCTTATTCATTTATTTTGC
* *
178633 TTTATTTTTATTTATTTATTTT
1 TTTATTCTTATTCATTTATTTT
178655 AACATTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (24 bp):
TTTATTCTTATTCATTTATTTTGC
Found at i:178641 original size:36 final size:36
Alignment explanation
Indices: 178566--178701 Score: 111
Period size: 36 Copynumber: 3.8 Consensus size: 36
178556 TATTTTGTTG
* * *
178566 TTTTATT-TTTATTTCTTTTCTATTTTTTTTTATCT-T
1 TTTTATTATTTATTT-TATTC-ATTTTTTTTGATTTAT
*
178602 TTTTATT-TTTATTCTTATTCATTTTTTTTGCTTTAT
1 TTTTATTATTTATT-TTATTCATTTTTTTTGATTTAT
* * * *
178638 TTTTATTTATTTATTTTA-ACATTTTATTTGTTTTAC
1 TTTTA-TTATTTATTTTATTCATTTTTTTTGATTTAT
* *
178674 TTATATTATTTATTTTATT-ATTCTTTTT
1 TTTTATTATTTATTTTATTCATTTTTTTT
178702 ATCTTTTTCT
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
35 30 0.36
36 41 0.49
37 6 0.07
38 6 0.07
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.75
Consensus pattern (36 bp):
TTTTATTATTTATTTTATTCATTTTTTTTGATTTAT
Found at i:178650 original size:14 final size:14
Alignment explanation
Indices: 178573--178654 Score: 60
Period size: 15 Copynumber: 5.6 Consensus size: 14
178563 TTGTTTTATT
178573 TTTATTTCTT-TTCTA
1 TTTATTT-TTATT-TA
* *
178588 TTTTTTTTTATCTTT
1 TTTATTTTTAT-TTA
178603 TTTATTTTTATTCTTA
1 TTTATTTTTA-T-TTA
* *
178619 TTCATTTTT-TTTGC
1 TTTATTTTTATTT-A
178633 TTTATTTTTATTTA
1 TTTATTTTTATTTA
178647 TTTATTTT
1 TTTATTTT
178655 AACATTTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
13 2 0.04
14 19 0.35
15 20 0.37
16 13 0.24
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.78
Consensus pattern (14 bp):
TTTATTTTTATTTA
Found at i:178671 original size:9 final size:9
Alignment explanation
Indices: 178545--178692 Score: 55
Period size: 9 Copynumber: 16.8 Consensus size: 9
178535 ATTATTTTGC
178545 TTTTATTT-
1 TTTTATTTA
178553 TTTTATTT-
1 TTTTATTTA
178561 TGTTGT-TTTA
1 T-TT-TATTTA
*
178571 TTTTTATTTC
1 -TTTTATTTA
*
178581 TTTTCTATT-
1 TTTTAT-TTA
178590 TTTT-TTTA
1 TTTTATTTA
178598 TCTTT-TTTA
1 T-TTTATTTA
178607 --TT-TTTA
1 TTTTATTTA
*
178613 TTCTTATTCA
1 TT-TTATTTA
* *
178623 TTTTTTTTG
1 TTTTATTTA
* *
178632 CTTTATTTT
1 TTTTATTTA
178641 TATTTATTTA
1 T-TTTATTTA
**
178651 TTTTA-ACA
1 TTTTATTTA
*
178659 TTTTATTTG
1 TTTTATTTA
*
178668 TTTTACTTA
1 TTTTATTTA
*
178677 TATTATTTA
1 TTTTATTTA
178686 TTTTATT
1 TTTTATT
178693 ATTCTTTTTA
Statistics
Matches: 105, Mismatches: 21, Indels: 27
0.69 0.14 0.18
Matches are distributed among these distances:
6 6 0.06
7 2 0.02
8 17 0.16
9 58 0.55
10 21 0.20
11 1 0.01
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:178684 original size:18 final size:17
Alignment explanation
Indices: 178640--178694 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
178630 TGCTTTATTT
178640 TTAT-TTATTTATTTTA
1 TTATATTATTTATTTTA
** * *
178656 ACATTTTATTTGTTTTA
1 TTATATTATTTATTTTA
178673 CTTATATTATTTATTTTA
1 -TTATATTATTTATTTTA
178691 TTAT
1 TTAT
178695 TCTTTTTATC
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 2 0.07
17 15 0.50
18 13 0.43
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (17 bp):
TTATATTATTTATTTTA
Found at i:181725 original size:20 final size:20
Alignment explanation
Indices: 181700--181742 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
181690 GTGGGGCAAA
* *
181700 ATGTATGTGTATACATATGT
1 ATGTATCTGTACACATATGT
*
181720 ATGTATCTGTACATATATGT
1 ATGTATCTGTACACATATGT
181740 ATG
1 ATG
181743 CTTGTAGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (20 bp):
ATGTATCTGTACACATATGT
Found at i:183196 original size:3 final size:3
Alignment explanation
Indices: 183183--183255 Score: 128
Period size: 3 Copynumber: 24.3 Consensus size: 3
183173 TTTTACCCAC
*
183183 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
183231 ATT ATC ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
183256 AATATATATT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:183282 original size:14 final size:15
Alignment explanation
Indices: 183254--183288 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
183244 TTATTATTAT
183254 TAAATATATATTAAA
1 TAAATATATATTAAA
183269 TAAATATATA-TAAA
1 TAAATATATATTAAA
183283 TAAATA
1 TAAATA
183289 ATTACAGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATATATATTAAA
Found at i:183775 original size:13 final size:13
Alignment explanation
Indices: 183757--183781 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
183747 AGAGAGACGG
183757 AGAGAAAAAAAAC
1 AGAGAAAAAAAAC
183770 AGAGAAAAAAAA
1 AGAGAAAAAAAA
183782 AGATATACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAGAAAAAAAAC
Found at i:196089 original size:7 final size:7
Alignment explanation
Indices: 196077--196152 Score: 68
Period size: 7 Copynumber: 10.4 Consensus size: 7
196067 CTTGAAGAAA
196077 AAAAAAG
1 AAAAAAG
196084 AAAAAA-
1 AAAAAAG
196090 AATAAAA-
1 AA-AAAAG
*
196097 AATAAAAT
1 AA-AAAAG
196105 AAAAAA-
1 AAAAAAG
196111 AAAAATAG
1 AAAAA-AG
196119 AAAAAAG
1 AAAAAAG
196126 AAAAAAG
1 AAAAAAG
196133 AGAAAAAG
1 A-AAAAAG
196141 AAGAAAAAG
1 -A-AAAAAG
196150 AAA
1 AAA
196153 GGGGGTCAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
6 7 0.11
7 34 0.54
8 14 0.22
9 8 0.13
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (7 bp):
AAAAAAG
Found at i:196089 original size:9 final size:9
Alignment explanation
Indices: 196075--196153 Score: 67
Period size: 9 Copynumber: 9.0 Consensus size: 9
196065 TGCTTGAAGA
196075 AAAAAAAAG
1 AAAAAAAAG
*
196084 AAAAAAAAT
1 AAAAAAAAG
196093 AAAAAATAA-
1 AAAAAA-AAG
*
196102 AATAAAAA-
1 AAAAAAAAG
*
196110 AAAAAATAG
1 AAAAAAAAG
196119 --AAAAAAG
1 AAAAAAAAG
*
196126 AAAAAAGAG
1 AAAAAAAAG
*
196135 AAAAAGAAG
1 AAAAAAAAG
196144 AAAAAGAAAG
1 AAAAA-AAAG
196154 GGGGTCAAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
7 6 0.11
8 8 0.14
9 37 0.66
10 5 0.09
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:196138 original size:24 final size:23
Alignment explanation
Indices: 196077--196152 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 23
196067 CTTGAAGAAA
196077 AAAAAAGAAAAAAAATAAAAAATA-
1 AAAAAAG-AAAAAAATAAAAAA-AG
*
196101 AAATAAAAAAAAAAATAGAAAAAAG
1 AAA-AAAGAAAAAAATA-AAAAAAG
* *
196126 AAAAAAGAGAAAAAGAAGAAAAAG
1 AAAAAAGAAAAAAATAA-AAAAAG
196150 AAA
1 AAA
196153 GGGGGTCAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
23 1 0.02
24 32 0.73
25 11 0.25
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (23 bp):
AAAAAAGAAAAAAATAAAAAAAG
Found at i:196148 original size:1 final size:1
Alignment explanation
Indices: 196074--196131 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
196064 ATGCTTGAAG
* * * * * * *
196074 AAAAAAAAAGAAAAAAAATAAAAAATAAAATAAAAAAAAAAATAGAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
196132 GAGAAAAAGA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (1 bp):
A
Found at i:196488 original size:16 final size:16
Alignment explanation
Indices: 196462--196506 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
196452 TTTGAATACA
*
196462 ATTCTATTTATTTCAAG
1 ATTCAATTTATTT-AAG
*
196479 -TTCAATTTATTTGAG
1 ATTCAATTTATTTAAG
196494 ATTCAATTTATTT
1 ATTCAATTTATTT
196507 TTGGAAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 2 0.08
16 23 0.92
ACGTcount: A:0.29, C:0.09, G:0.07, T:0.56
Consensus pattern (16 bp):
ATTCAATTTATTTAAG
Found at i:197554 original size:83 final size:83
Alignment explanation
Indices: 197245--197552 Score: 528
Period size: 83 Copynumber: 3.7 Consensus size: 83
197235 CATTAACTGA
197245 AAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAG
1 AAGATGAATTTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAG
*
197309 AACCAATCATTGAATTTAG
65 AACCAATCATTGAATTTGG
* * *
197328 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGCAGA
1 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
*
197393 ACCAATCATTGAATTGGG
66 ACCAATCATTGAATTTGG
* *
197411 AAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGA
1 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
197476 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
*
197494 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
197553 GGTAAGAACT
Statistics
Matches: 212, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 212 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (83 bp):
AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
ACCAATCATTGAATTTGG
Found at i:198507 original size:17 final size:17
Alignment explanation
Indices: 198462--198510 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
198452 CAAGAGAAGG
198462 TTCATAATGAGAAG-AA
1 TTCATAATGAGAAGAAA
* *
198478 CTCAT-CTGCAGAAGAAA
1 TTCATAATG-AGAAGAAA
198495 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
198511 TTTGTTCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 2 0.08
16 9 0.35
17 13 0.50
18 2 0.08
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (17 bp):
TTCATAATGAGAAGAAA
Found at i:198512 original size:16 final size:16
Alignment explanation
Indices: 198462--198512 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
198452 CAAGAGAAGG
198462 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
* *
198478 CTCAT-CTGCAGAAGAAA
1 TTCATAATG-AGAAG-AA
198495 TTCATAATGAGAAGAA
1 TTCATAATGAGAAGAA
198511 TT
1 TT
198513 TGTTCAACCT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
15 2 0.07
16 13 0.46
17 11 0.39
18 2 0.07
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (16 bp):
TTCATAATGAGAAGAA
Found at i:198614 original size:220 final size:225
Alignment explanation
Indices: 198203--199063 Score: 1145
Period size: 220 Copynumber: 3.8 Consensus size: 225
198193 ATTCAAATCT
*
198203 ATCATTTGATGGATTGA-CATTTCAAGAGAAGGTTCATAATGAGAAGAACTCATCTAAAGAAGGA
1 ATCATTTGATGGATT-ATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCT--AGAAGGA
*
198267 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTCTGCCT-AATTCTATCACTTGATGGATC
63 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTCTGCCTGAATTCTATCACTTGATGGATC
* *
198331 AGCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAAT
128 AGCTTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
*
198396 GAGAAGAATTTGTTCAACCTGTTACCTGAATTC
193 GAGAAGAATTTGTTCAACCTTTTACCTGAATTC
* * *
198429 ATCACTTGATGGATTATCTTTTCCAAGAGAAGGTTCATAATGAGAAGAACTCATCT-GCA-GAAG
1 ATCATTTGATGGATTATCATTTCC-AGAGAAGGTTCATAATGAGAAGAACTCATCTAGAAGGAAG
198492 -A-AA-TTCATAATGAGAAGAATTTGTTCAACCTTCTGCCT-AATTCTATCACTTGATGGATCAG
65 AAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTCTGCCTGAATTCTATCACTTGATGGATCAG
198553 CTTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
130 CTTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGA
*
198618 GAAGAATTTGTTCAACCTTTTTCCTGAATTC
195 GAAGAATTTGTTCAACCTTTTACCTGAATTC
* *
198649 ATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 ATC-ATTTGATGGATTATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCT--AGAAGGA
* ** *
198714 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTGAATT-TATCAAATTGATGGAT
63 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTCTGCCTGAATTCTATC-ACTTGATGGAT
* * * * *
198778 TATCTTTTCCAGAGAAGGGTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAA
127 CAGCTTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
* * * *
198843 TGAGAAGAACTTGTTCAATCTTTTGCTTGAATTC
192 TGAGAAGAATTTGTTCAACCTTTTACCTGAATTC
* * * *
198877 ATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 ATCATTTGATGGATTATCATTTCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCATCT--AGAA
* * * * *
198941 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTC-ATCATTTGATGG
60 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTCTGCCTGAATTCTATCACTTGATGG
* * ** *
199005 ATCATCATCCCCAGCAGAAA-GTTCATAATGAGAAGAACTCATCTGAAGAAAG-AGAAGAA
125 ATCAGCTTTTCCAG-A-AAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA
199064 TTTATTCAAT
Statistics
Matches: 573, Mismatches: 43, Indels: 35
0.88 0.07 0.05
Matches are distributed among these distances:
220 184 0.32
221 22 0.04
222 1 0.00
223 6 0.01
224 6 0.01
225 2 0.00
226 24 0.04
227 102 0.18
228 107 0.19
229 25 0.04
230 92 0.16
231 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (225 bp):
ATCATTTGATGGATTATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTAGAAGGAAGA
AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTCTGCCTGAATTCTATCACTTGATGGATCAGC
TTTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
AAGAATTTGTTCAACCTTTTACCTGAATTC
Found at i:198689 original size:114 final size:113
Alignment explanation
Indices: 198222--199063 Score: 1157
Period size: 114 Copynumber: 7.5 Consensus size: 113
198212 TGGATTGACA
* * *
198222 TTTCAAGAGAAGGTTCATAATGAGAAGAACTCATCTAAAGAAGGAAGAAGAAATTCATAATGAGA
1 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* *
198287 AGAATTTGTTCAACCTTCTGCCT-AATTCTATCACTTGATGGATCAGCT
66 AGAATTTGTTCAACCTTTTGCCTGAATTC-ATCACTTGATGGATCATCT
*
198335 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGA
1 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * *
198400 AGAATTTGTTCAACCTGTTACCTGAATTCATCACTTGATGGATTATCT
66 AGAATTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCATCT
*
198448 TTTCCAAGAGAAGGTTCATAATGAGAAGAACTCATCT---GCA-GAAG-A-AA-TTCATAATGAG
1 TTTCC-AGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* *
198506 AAGAATTTGTTCAACCTTCTGCCT-AATTCTATCACTTGATGGATCAGCT
65 AAGAATTTGTTCAACCTTTTGCCTGAATTC-ATCACTTGATGGATCATCT
*
198555 TTTCCAGAAAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * *
198620 AGAATTTGTTCAACCTTTTTCCTGAATTCATCAAATTGATGGATTATCT
66 AGAATTTGTTCAACCTTTTGCCTGAATTCATC-ACTTGATGGATCATCT
198669 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
** * * *
198734 AGAATTTGTTCAACCTTTTTTCTGAATTTATCAAATTGATGGATTATCT
66 AGAATTTGTTCAACCTTTTGCCTGAATTCATC-ACTTGATGGATCATCT
* *
198783 TTTCCAGAGAAGGGTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAGA
1 TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
* * * * * *
198848 AGAACTTGTTCAATCTTTTGCTTGAATTCATCATTTGATGGATCAACA
66 AGAATTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCATCT
* *
198896 TTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 TTTCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * * *
198960 GAGAAGAACTTGTTCAATCTTTTGCTTGAATTCATCATTTGATGGATCATCA
62 GAGAAGAATTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCATCT
** * *
199012 TCCCCAGCAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAG-AGAAGAA
1 TTTCCAG-AGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAA
199064 TTTATTCAAT
Statistics
Matches: 666, Mismatches: 45, Indels: 36
0.89 0.06 0.05
Matches are distributed among these distances:
106 35 0.05
107 54 0.08
108 2 0.00
109 3 0.00
110 8 0.01
111 3 0.00
112 5 0.01
113 182 0.27
114 267 0.40
115 2 0.00
116 86 0.13
117 17 0.03
118 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
TTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGA
AGAATTTGTTCAACCTTTTGCCTGAATTCATCACTTGATGGATCATCT
Found at i:199208 original size:3 final size:3
Alignment explanation
Indices: 199200--199299 Score: 191
Period size: 3 Copynumber: 33.3 Consensus size: 3
199190 TTTTACCCAC
199200 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
199248 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
199296 ATT A
1 ATT A
199300 AATATATATT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 95 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:199326 original size:14 final size:15
Alignment explanation
Indices: 199298--199332 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
199288 TTATTATTAT
199298 TAAATATATATTAAA
1 TAAATATATATTAAA
199313 TAAATATATA-TAAA
1 TAAATATATATTAAA
199327 TAAATA
1 TAAATA
199333 ATTACAGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATATATATTAAA
Found at i:199817 original size:14 final size:14
Alignment explanation
Indices: 199798--199824 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
199788 AGAGAGACGG
199798 AGAGAAAAAAAAAC
1 AGAGAAAAAAAAAC
199812 AGAGAAAAAAAAA
1 AGAGAAAAAAAAA
199825 GATATACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (14 bp):
AGAGAAAAAAAAAC
Found at i:202294 original size:76 final size:73
Alignment explanation
Indices: 202145--202590 Score: 556
Period size: 73 Copynumber: 6.0 Consensus size: 73
202135 AAAATATCGA
* * *
202145 TTTTTTAAGGTTGCTAATAATGTAAACGTTAAAAAAATATATG--TTACATATTACATTAAAATA
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAA-ATAGGCACTACATATTACATTAAAATA
**
202208 CCTATAGGT
65 CCTACCGGT
*
202217 TTTTTTAAAGGTTGCTAATAATGTAAACGGTATAAAAAAAATAGGCACTACATATTACATTAAAC
1 TTTTTT-AAGGTTGCTAATAATGTAAACGG--TAAAAAAAATAGGCACTACATATTACATTAAAA
202282 TACCTACCGGTT
63 TACCTACCGG-T
* * *
202294 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACCTATTACAATAAATTAC
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACATATTACATTAAAATAC
202359 CTACCGGTT
66 CTACCGG-T
* * *** *
202368 TTTTTTAAGGTTGCTAATTATGTAAATGGTAAAAAAAAAATAGGTGTTACATATAACATTAAAAT
1 TTTTTTAAGGTTGCTAATAATGTAAACGGT--AAAAAAAATAGGCACTACATATTACATTAAAAT
*
202433 ACCTACCGAT
64 ACCTACCGGT
* * * * * *
202443 TTTTTTAAGGTTACTAATAATGCAAACGGTAAAAAAAATAGGCTCTACCTATTACATTAAATTAT
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACATATTACATTAAAATAC
202508 CTACC-GT
66 CTACCGGT
* * * *
202515 TTTTTTGAAGGTTGCTAATAATGTAAACAGTAAAAAAAATCGGCACTACCTATTACGTTAAAATA
1 TTTTTT-AAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACATATTACATTAAAATA
202580 CCTACCGGT
65 CCTACCGGT
202589 TT
1 TT
202591 CATTATAACA
Statistics
Matches: 325, Mismatches: 39, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
72 13 0.04
73 111 0.34
74 78 0.24
75 35 0.11
76 81 0.25
77 7 0.02
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (73 bp):
TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACATATTACATTAAAATAC
CTACCGGT
Found at i:202460 original size:149 final size:149
Alignment explanation
Indices: 202145--202587 Score: 581
Period size: 149 Copynumber: 3.0 Consensus size: 149
202135 AAAATATCGA
* * * * *
202145 TTTTTTAAGGTTGCTAATAATGTAAACGTTAAAAAAATATATG-TTACATATTACATTAAAATAC
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAA-ATAGGCCTACCTATTACATTAAATTAC
** * *
202209 CTATAGGTTTTTTTAAAGGTTGCTAATAATGTAAACGGTATAAAAAAAATAGGCACTACATATTA
65 CTACCGGTTTTTTTAAAGGTTGCTAATAATGTAAACGGTAAAAAAAAAATAGGCACTACATATAA
* *
202274 CATTAAACTACCTACCGGTT
130 CATTAAAATACCTACCGGAT
*
202294 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCACTACCTATTACAATAAATTAC
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGC-CTACCTATTACATTAAATTAC
* * * ***
202359 CTACCGGTTTTTTTTAAGGTTGCTAATTATGTAAATGGTAAAAAAAAAATAGGTGTTACATATAA
65 CTACCGGTTTTTTTAAAGGTTGCTAATAATGTAAACGGTAAAAAAAAAATAGGCACTACATATAA
202424 CATTAAAATACCTACC-GAT
130 CATTAAAATACCTACCGGAT
* * *
202443 TTTTTTAAGGTTACTAATAATGCAAACGGTAAAAAAAATAGGCTCTACCTATTACATTAAATTAT
1 TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGC-CTACCTATTACATTAAATTAC
* * * * *
202508 CTACC-GTTTTTTTGAAGGTTGCTAATAATGTAAACAGT--AAAAAAAATCGGCACTACCTATTA
65 CTACCGGTTTTTTTAAAGGTTGCTAATAATGTAAACGGTAAAAAAAAAATAGGCACTACATATAA
*
202570 CGTTAAAATACCTACCGG
130 CATTAAAATACCTACCGG
202588 TTTCATTATA
Statistics
Matches: 257, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
146 33 0.13
147 1 0.00
148 33 0.13
149 103 0.40
150 87 0.34
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (149 bp):
TTTTTTAAGGTTGCTAATAATGTAAACGGTAAAAAAAATAGGCCTACCTATTACATTAAATTACC
TACCGGTTTTTTTAAAGGTTGCTAATAATGTAAACGGTAAAAAAAAAATAGGCACTACATATAAC
ATTAAAATACCTACCGGAT
Found at i:208889 original size:21 final size:21
Alignment explanation
Indices: 208863--208902 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
208853 CGTCCTTTGA
*
208863 AGGGGAACCGATTCCCCCTAC
1 AGGGGAACCGATACCCCCTAC
*
208884 AGGGGAATCGATACCCCCT
1 AGGGGAACCGATACCCCCT
208903 GGGGTTCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.15
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCTAC
Found at i:214227 original size:2 final size:2
Alignment explanation
Indices: 214216--214248 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
214206 AAAATATGTT
214216 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
214249 AGATTTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:217659 original size:19 final size:19
Alignment explanation
Indices: 217608--217660 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
217598 TTTTTTAAAA
*
217608 TTTAATAAAAATATTAAATT
1 TTTAATAAAAA-ATAAAATT
* ***
217628 TATAATTGGAAATAAAATT
1 TTTAATAAAAAATAAAATT
217647 TTTAATAAAAAATA
1 TTTAATAAAAAATA
217661 TTTTTTTATC
Statistics
Matches: 24, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (19 bp):
TTTAATAAAAAATAAAATT
Found at i:218029 original size:32 final size:31
Alignment explanation
Indices: 217969--218030 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
217959 ATAAACCGAA
* * * *
217969 AATCAACCGATCCGTTGTTGACTTAACCCGG
1 AATCAACCGATCCGATATTAACTCAACCCGG
218000 AATCTAACCGATCCGATATTAACTCAACCCG
1 AATC-AACCGATCCGATATTAACTCAACCCG
218031 ATATTGACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (31 bp):
AATCAACCGATCCGATATTAACTCAACCCGG
Found at i:218062 original size:48 final size:48
Alignment explanation
Indices: 218000--218103 Score: 147
Period size: 48 Copynumber: 2.1 Consensus size: 48
217990 CTTAACCCGG
*
218000 AATCTAACCGATCCGATATTAA-CTCAACCCGATATTGACCCAATCCAAA
1 AATC-AACCAATCCGATATTAATC-CAACCCGATATTGACCCAATCCAAA
* * *
218049 AATCAACCAATCCGGTATTAATCCAACTCGATATTGACCCGATCCAAA
1 AATCAACCAATCCGATATTAATCCAACCCGATATTGACCCAATCCAAA
218097 AATCAAC
1 AATCAAC
218104 TGATCTGACA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
48 45 0.90
49 5 0.10
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.22
Consensus pattern (48 bp):
AATCAACCAATCCGATATTAATCCAACCCGATATTGACCCAATCCAAA
Found at i:218121 original size:48 final size:48
Alignment explanation
Indices: 218000--218122 Score: 131
Period size: 48 Copynumber: 2.5 Consensus size: 48
217990 CTTAACCCGG
* *
218000 AATCTAACCGATCCGATATTAA-CTCAACCCGATATTGACCCAATCCAAA
1 AATC-AACCAATCCGACATTAATC-CAACCCGATATTGACCCAATCCAAA
** * *
218049 AATCAACCAATCCGGTATTAATCCAACTCGATATTGACCCGATCCAAA
1 AATCAACCAATCCGACATTAATCCAACCCGATATTGACCCAATCCAAA
** * *
218097 AATCAACTGATCTGACATTGATCCAA
1 AATCAACCAATCCGACATTAATCCAA
218123 ACTGAAAAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 58 0.92
49 5 0.08
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (48 bp):
AATCAACCAATCCGACATTAATCCAACCCGATATTGACCCAATCCAAA
Found at i:221935 original size:16 final size:16
Alignment explanation
Indices: 221916--221948 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
221906 AAGAATGAAA
221916 TGATAT-TTAATATAAT
1 TGATATGTTAATA-AAT
221932 TGATATGTTAATAAAT
1 TGATATGTTAATAAAT
221948 T
1 T
221949 TAATCATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (16 bp):
TGATATGTTAATAAAT
Found at i:223422 original size:16 final size:16
Alignment explanation
Indices: 223402--223438 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
223392 ATTATTACTT
*
223402 ATTCAAGTCATTTTAA
1 ATTCAAGTCAATTTAA
*
223418 GTTCAAGTCAATTTAA
1 ATTCAAGTCAATTTAA
223434 ATTCA
1 ATTCA
223439 GGTCCATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (16 bp):
ATTCAAGTCAATTTAA
Found at i:223454 original size:16 final size:16
Alignment explanation
Indices: 223403--223455 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
223393 TTATTACTTA
* *
223403 TTCAAGTCATTTTAAG
1 TTCAAGTCAATTCAAG
* *
223419 TTCAAGTCAATTTAAA
1 TTCAAGTCAATTCAAG
* *
223435 TTCAGGTCCATTCAAG
1 TTCAAGTCAATTCAAG
223451 TTCAA
1 TTCAA
223456 ATTGAATAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (16 bp):
TTCAAGTCAATTCAAG
Found at i:231236 original size:31 final size:31
Alignment explanation
Indices: 231146--231239 Score: 136
Period size: 31 Copynumber: 3.0 Consensus size: 31
231136 CCCAAGTGTT
* *
231146 TAGGAGTTCCTAGTGAGAAAGACATATTCAA
1 TAGGAGTTCCTAGTGAGAATGACATATTGAA
**
231177 TAGGAGTTTATAGTGAGAATGACATATTGAA
1 TAGGAGTTCCTAGTGAGAATGACATATTGAA
231208 T-GAGAGTTCCTAGTGAGAATGACATATTGAA
1 TAG-GAGTTCCTAGTGAGAATGACATATTGAA
231239 T
1 T
231240 TCACCGAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
30 1 0.02
31 55 0.98
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (31 bp):
TAGGAGTTCCTAGTGAGAATGACATATTGAA
Done.