Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 55
Found at i:232004 original size:18 final size:19
Alignment explanation
Indices: 231969--232005 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
231959 CACAGAATGT
231969 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
231989 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
232006 GGATTAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:232421 original size:28 final size:26
Alignment explanation
Indices: 232379--232434 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 26
232369 TAAAATATAA
*
232379 TATTTATTATATTTTCTATATATAATT
1 TATTTATTATATTTTATATATAT-ATT
* *
232406 TATTTATTTATCTTTTATATTTATATT
1 TATTTA-TTATATTTTATATATATATT
232433 TA
1 TA
232435 ATTCTGCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (26 bp):
TATTTATTATATTTTATATATATATT
Found at i:235330 original size:31 final size:32
Alignment explanation
Indices: 235256--235330 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 32
235246 ATGATTTTTT
*
235256 CGCAGAGGCAAGCTAAAGGGGAGAAGAAGATA
1 CGCAGAGGCAAACTAAAGGGGAGAAGAAGATA
*** * * *
235288 CATTGAGGCAAACTCAAGGGG-GGAGAATATA
1 CGCAGAGGCAAACTAAAGGGGAGAAGAAGATA
235319 CGCAGAGGCAAA
1 CGCAGAGGCAAA
235331 GGGGAAAAGA
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
31 17 0.52
32 16 0.48
ACGTcount: A:0.41, C:0.15, G:0.35, T:0.09
Consensus pattern (32 bp):
CGCAGAGGCAAACTAAAGGGGAGAAGAAGATA
Found at i:236258 original size:13 final size:13
Alignment explanation
Indices: 236240--236283 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
236230 GTCATAAATC
236240 TATGACACGCATT
1 TATGACACGCATT
* *
236253 TATGACACACAAT
1 TATGACACGCATT
*
236266 TATGACGCGCATT
1 TATGACACGCATT
236279 TATGA
1 TATGA
236284 TGCTCATTGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (13 bp):
TATGACACGCATT
Found at i:250468 original size:22 final size:23
Alignment explanation
Indices: 250442--250487 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
250432 GGTTGGGCAG
*
250442 AGCTGGCAGTGGTCC-CTTGGGT
1 AGCTGGCAATGGTCCACTTGGGT
*
250464 AGCTGGTAATGGTCCAACTTGGGT
1 AGCTGGCAATGGTCC-ACTTGGGT
250488 GGGTGACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
24 7 0.35
ACGTcount: A:0.15, C:0.20, G:0.37, T:0.28
Consensus pattern (23 bp):
AGCTGGCAATGGTCCACTTGGGT
Found at i:250857 original size:20 final size:20
Alignment explanation
Indices: 250828--250870 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
250818 ATTCCACCAC
* *
250828 ATGCAACTATATGTTTCTAA
1 ATGCAACTATATGATCCTAA
*
250848 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
250868 ATG
1 ATG
250871 TACTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:253497 original size:29 final size:30
Alignment explanation
Indices: 253462--253523 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
253452 AATGGGGACG
253462 GGGAAAAA-CTGTTTATGCTAAACGGGGAT
1 GGGAAAAACCTGTTTATGCTAAACGGGGAT
*
253491 GGGAAAAACCTGTTTATGTTAAACGGGGAT
1 GGGAAAAACCTGTTTATGCTAAACGGGGAT
253521 GGG
1 GGG
253524 GACGAGTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 8 0.26
30 23 0.74
ACGTcount: A:0.32, C:0.10, G:0.34, T:0.24
Consensus pattern (30 bp):
GGGAAAAACCTGTTTATGCTAAACGGGGAT
Found at i:253568 original size:12 final size:12
Alignment explanation
Indices: 253540--253588 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
253530 TTTAGTAATC
*
253540 CCCGCCCCGATTA
1 CCCGACCCGA-TA
*
253553 CCCGGCCCGATA
1 CCCGACCCGATA
253565 CCCGACCCGATA
1 CCCGACCCGATA
* *
253577 CTCAACCCGATA
1 CCCGACCCGATA
253589 AATATTAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 23 0.72
13 9 0.28
ACGTcount: A:0.22, C:0.49, G:0.16, T:0.12
Consensus pattern (12 bp):
CCCGACCCGATA
Found at i:256537 original size:3 final size:3
Alignment explanation
Indices: 256529--256553 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
256519 AGAAAAGATA
256529 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
256554 GTTAAAACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:264238 original size:5 final size:5
Alignment explanation
Indices: 264228--264284 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
264218 GACTAGTTCA
*
264228 TTATT TTATT TTATT TTATT TTATTTT TTATT TT-TCA TTATT TTATT
1 TTATT TTATT TTATT TTATT TTA--TT TTATT TTAT-T TTATT TTATT
*
264275 AT-TT TTATT T
1 TTATT TTATT T
264285 AACAATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.09
5 33 0.77
6 1 0.02
7 5 0.12
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:264259 original size:22 final size:24
Alignment explanation
Indices: 264227--264284 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 24
264217 TGACTAGTTC
*
264227 ATTA-TTTTATTTTAT-TTTATTTT
1 ATTATTTTTATTTT-TCATTATTTT
264250 A-T-TTTTTATTTTTCATTATTTT
1 ATTATTTTTATTTTTCATTATTTT
264272 ATTATTTTTATTT
1 ATTATTTTTATTT
264285 AACAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.03
22 18 0.60
23 2 0.07
24 9 0.30
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.78
Consensus pattern (24 bp):
ATTATTTTTATTTTTCATTATTTT
Found at i:265499 original size:52 final size:52
Alignment explanation
Indices: 265443--265546 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
265433 TTTCTTGCCC
265443 AACCATGAACTAATTTAGCTTGGCTTGGGTTTATTATGGATAATGATGATTT
1 AACCATGAACTAATTTAGCTTGGCTTGGGTTTATTATGGATAATGATGATTT
* *
265495 AACCATGAACTGATTTAGCTTGGCTTGGGTTTATTATGGATGATGATGATTT
1 AACCATGAACTAATTTAGCTTGGCTTGGGTTTATTATGGATAATGATGATTT
265547 TGCTTAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (52 bp):
AACCATGAACTAATTTAGCTTGGCTTGGGTTTATTATGGATAATGATGATTT
Found at i:268619 original size:39 final size:39
Alignment explanation
Indices: 268565--268643 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
268555 ACGGAACGAA
* *
268565 AGAAAGCTATTCTAAGCTAGTCACAATCCTACAACTATT
1 AGAAAGCTATTCTAAGCCAGTAACAATCCTACAACTATT
*
268604 AGAAAGCTATTCTAAGCCAGTAACAATCCTACAGCTATT
1 AGAAAGCTATTCTAAGCCAGTAACAATCCTACAACTATT
268643 A
1 A
268644 ATGTAGAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (39 bp):
AGAAAGCTATTCTAAGCCAGTAACAATCCTACAACTATT
Found at i:270058 original size:28 final size:28
Alignment explanation
Indices: 270023--270088 Score: 132
Period size: 28 Copynumber: 2.4 Consensus size: 28
270013 ATATAAAGTA
270023 ATAAAATATTTAAAAATTATCAATAATT
1 ATAAAATATTTAAAAATTATCAATAATT
270051 ATAAAATATTTAAAAATTATCAATAATT
1 ATAAAATATTTAAAAATTATCAATAATT
270079 ATAAAATATT
1 ATAAAATATT
270089 CATCTTGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (28 bp):
ATAAAATATTTAAAAATTATCAATAATT
Found at i:271145 original size:22 final size:21
Alignment explanation
Indices: 271113--271154 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
271103 AAAATAAACA
**
271113 AATAAAGAAAATTTATAAAAT
1 AATAAAGAAAAAATATAAAAT
271134 AATAAAGTAAAAAATATAAAA
1 AATAAAG-AAAAAATATAAAA
271155 AGAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (21 bp):
AATAAAGAAAAAATATAAAAT
Found at i:271172 original size:15 final size:16
Alignment explanation
Indices: 271132--271170 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
271122 AATTTATAAA
*
271132 ATAATAAAGTAAAAAAT
1 ATAA-AAAGAAAAAAAT
271149 ATAAAAAGAAAAAAAT
1 ATAAAAAGAAAAAAAT
271165 ATAAAA
1 ATAAAA
271171 GACGTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (16 bp):
ATAAAAAGAAAAAAAT
Found at i:271231 original size:12 final size:11
Alignment explanation
Indices: 271214--271261 Score: 53
Period size: 12 Copynumber: 4.2 Consensus size: 11
271204 AGTGAGGAAG
271214 AAAATAAATAA
1 AAAATAAATAA
271225 TAAAAT-AATAA
1 -AAAATAAATAA
271236 ATAAATAAATAA
1 A-AAATAAATAA
*
271248 AAATTATAATAA
1 AAAATA-AATAA
271260 AA
1 AA
271262 TGAAATAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 1 0.03
11 13 0.41
12 18 0.56
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:272144 original size:3 final size:3
Alignment explanation
Indices: 272136--272191 Score: 60
Period size: 3 Copynumber: 17.3 Consensus size: 3
272126 AACCTGCAAA
272136 AAT AAT AAT AA- AGAT AAT AAT AAT AAT AAT AAT AAAT AAAT AAAT CAAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT
272185 AAT AAT A
1 AAT AAT A
272192 TTTTTTAAAC
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
2 1 0.02
3 33 0.67
4 15 0.31
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:272751 original size:9 final size:9
Alignment explanation
Indices: 272737--272762 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
272727 CATGTTCATC
272737 TGCACAATT
1 TGCACAATT
272746 TGCACAATT
1 TGCACAATT
272755 TGCACAAT
1 TGCACAAT
272763 GCCATTCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (9 bp):
TGCACAATT
Found at i:275056 original size:21 final size:21
Alignment explanation
Indices: 275032--275074 Score: 52
Period size: 24 Copynumber: 2.0 Consensus size: 21
275022 ATTTTCTCAT
275032 TTCC-CTCAAAATTACTCTCCC
1 TTCCTCTCAAAATT-CTCTCCC
275053 TTCCTTTCTCAAAATTCTCTCC
1 TTCC--TCTCAAAATTCTCTCC
275075 AACACTCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.40
Consensus pattern (21 bp):
TTCCTCTCAAAATTCTCTCCC
Found at i:276121 original size:35 final size:35
Alignment explanation
Indices: 276049--276130 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
276039 AAGCCTTTAC
*
276049 ATATGATATATTTTCAAAAACGTTTTAAAATTATAT
1 ATATTATATATTTTCAAAAACGTTTTAAAA-TATAT
* *
276085 ATTTTATATATTTTC-AAAATGTTTTCAAAA-ACTAT
1 ATATTATATATTTTCAAAAACGTTTT-AAAATA-TAT
276120 ATATTATATAT
1 ATATTATATAT
276131 AAAAACTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 1 0.03
35 22 0.55
36 17 0.43
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (35 bp):
ATATTATATATTTTCAAAAACGTTTTAAAATATAT
Found at i:276130 original size:37 final size:36
Alignment explanation
Indices: 276054--276131 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
276044 TTTACATATG
* *
276054 ATATATTTTCAAAAACGTTTTAAAATTATATATTTT
1 ATATATTTTCAAAAACGTTTTAAAACTATATATTAT
*
276090 ATATATTTTC-AAAATGTTTTCAAAAACTATATATTAT
1 ATATATTTTCAAAAACGTTTT--AAAACTATATATTAT
276127 ATATA
1 ATATA
276132 AAAACTATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 9 0.24
36 10 0.27
37 18 0.49
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (36 bp):
ATATATTTTCAAAAACGTTTTAAAACTATATATTAT
Found at i:276153 original size:22 final size:20
Alignment explanation
Indices: 276111--276151 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
276101 AAATGTTTTC
276111 AAAAACTATATATTATATAT
1 AAAAACTATATATTATATAT
*
276131 AAAAACTATATATAATATAT
1 AAAAACTATATATTATATAT
276151 A
1 A
276152 TATTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAACTATATATTATATAT
Found at i:277011 original size:123 final size:123
Alignment explanation
Indices: 276792--277051 Score: 412
Period size: 123 Copynumber: 2.1 Consensus size: 123
276782 ATCCTTCTTC
* * ** * *
276792 GTGAAGTTGAAATCATGGATGGTTCATTCCCTGTGAAGTTAAGCTTTGAACTGGATGTCCTTCAT
1 GTGAAGTTGAAATTATAGATGACTCATTCACTGTGAAGTTAAGCTTTGAACTGGATGTCCTTAAT
* *
276857 TGTGAAGTTGAAATCCAATCTTGTAAATTGCATCGCTTCGAGTTCAATATATTTCGCT
66 TGTGAAGTAGAAATCCAATATTGTAAATTGCATCGCTTCGAGTTCAATATATTTCGCT
* * *
276915 GTGAAGTTGAAATTATAGATGACTCATTCACTGTGAAGTTGAGCTTTGAATTGGATGTTCTTAAT
1 GTGAAGTTGAAATTATAGATGACTCATTCACTGTGAAGTTAAGCTTTGAACTGGATGTCCTTAAT
*
276980 TGTGAAGTAGAAATCCAATATTGTAAATTGCATCGCTTCGAGTTCAATATCTTTCGCT
66 TGTGAAGTAGAAATCCAATATTGTAAATTGCATCGCTTCGAGTTCAATATATTTCGCT
277038 GTGAAGTTGAAATT
1 GTGAAGTTGAAATT
277052 TACTCTAACA
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (123 bp):
GTGAAGTTGAAATTATAGATGACTCATTCACTGTGAAGTTAAGCTTTGAACTGGATGTCCTTAAT
TGTGAAGTAGAAATCCAATATTGTAAATTGCATCGCTTCGAGTTCAATATATTTCGCT
Found at i:287084 original size:24 final size:24
Alignment explanation
Indices: 287031--287096 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
287021 AAACAGTATA
287031 ATAAATAA-AAATTTAAAATTAAGG
1 ATAAA-AATAAATTTAAAATTAAGG
* *
287055 ATAAAAATAAATTTAAAATTTTAGT
1 ATAAAAATAAATTTAAAA-TTAAGG
*
287080 A-AAAAATAAAGTTAAAA
1 ATAAAAATAAATTTAAAA
287097 ATCACCTTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 2 0.05
24 30 0.81
25 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (24 bp):
ATAAAAATAAATTTAAAATTAAGG
Found at i:296775 original size:30 final size:30
Alignment explanation
Indices: 296739--296801 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
296729 GAAGCTGGAT
296739 AAAGCACTCTGGGCTTATCGAACGTCATAC
1 AAAGCACTCTGGGCTTATCGAACGTCATAC
296769 AAAGCACTCTGGGCTTATCGAACGTCATAC
1 AAAGCACTCTGGGCTTATCGAACGTCATAC
296799 AAA
1 AAA
296802 ACATCTTTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (30 bp):
AAAGCACTCTGGGCTTATCGAACGTCATAC
Found at i:297385 original size:17 final size:18
Alignment explanation
Indices: 297345--297385 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
297335 AAATAAATCT
*
297345 TTATTTTATTCTCTTTAA
1 TTATTTTATTCTCGTTAA
*
297363 CT-TTTTATTCT-GTTAA
1 TTATTTTATTCTCGTTAA
297379 TTATTTT
1 TTATTTT
297386 TGGCTAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.26
17 13 0.68
18 1 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (18 bp):
TTATTTTATTCTCGTTAA
Found at i:302528 original size:62 final size:61
Alignment explanation
Indices: 302457--302579 Score: 167
Period size: 62 Copynumber: 2.0 Consensus size: 61
302447 GTTCACAAGC
* * *
302457 AAGCTTGTTTATCGA-ATCATTCATTTATGTTCATGAACAAGCTTATTTAATGGTTTGTTTAT
1 AAGCTTGTTTATCGACATC--TCATTTATGTTCATCAACAAGCTCATTTAATGGTTCGTTTAT
* *
302519 AAGCTTGTTTATCGACGTGCTCATTTATGTTCATCAACAAGCTCGTTTAATGGTTCGTTTA
1 AAGCTTGTTTATCGACAT-CTCATTTATGTTCATCAACAAGCTCATTTAATGGTTCGTTTA
302580 CTTTTTGTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
62 52 0.96
63 1 0.02
64 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (61 bp):
AAGCTTGTTTATCGACATCTCATTTATGTTCATCAACAAGCTCATTTAATGGTTCGTTTAT
Found at i:302719 original size:23 final size:23
Alignment explanation
Indices: 302692--302745 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
302682 AAACATGTTC
* *
302692 ACAAACATATAAATGGACACTAT
1 ACAAACATATAAATGAACACTAA
302715 ACAAACATATAAATGAACACTAA
1 ACAAACATATAAATGAACACTAA
302738 ACAAACAT
1 ACAAACAT
302746 GTTCGCAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.57, C:0.19, G:0.06, T:0.19
Consensus pattern (23 bp):
ACAAACATATAAATGAACACTAA
Found at i:306864 original size:21 final size:20
Alignment explanation
Indices: 306818--306868 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
306808 TCCATAGGAG
** *
306818 TATCGATACTCGAGGTTCTA
1 TATCGATACTCGAGGGCCAA
*
306838 TCTCGATACTCAGAGGGCCAA
1 TATCGATACTC-GAGGGCCAA
306859 TATCGATACT
1 TATCGATACT
306869 AAAGTGATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (20 bp):
TATCGATACTCGAGGGCCAA
Found at i:312656 original size:137 final size:136
Alignment explanation
Indices: 312514--312813 Score: 288
Period size: 137 Copynumber: 2.2 Consensus size: 136
312504 TAAACGAAGA
* * *
312514 CCAAATCAAAAATTCTCCTAGATTAAGGGC-AAA-GTTTAAATTAAACCTAAAATGGAGGCTCTA
1 CCAAATAAAAAATTCTCCTA-ATTAAGGACTAAATG-TGAAATTAAACCTAAAATGGAGGCTCT-
* * * **
312577 AACATT-ACCCT-ATTCAATTTTAATCAGTTA-TGCAATTCAAATAATTAAATT-GGAACCTCGA
63 AACATTAACCATAATT-AATTTTAATCAATTATTG-AATT-AAATAACT-AATTCAAAACCTCGA
312638 GCAAAAGCGAGGG
124 GCAAAAGCGAGGG
* * * * * ** *
312651 TCAAATTAAGAATTTTCCTAATTTAAGTACTAAATGTGAAATTAGGCCTAAGATGGAGGCTCTAA
1 CCAAATAAAAAATTCTCCTAA-TTAAGGACTAAATGTGAAATTAAACCTAAAATGGAGGCTCTAA
* * * * *
312716 TATTAATCATAATTAATTTTAGTCAATTATTGAATTGAATAACTAATTCAAAACCTCGAGCATAA
65 CATTAACCATAATTAATTTTAATCAATTATTGAATTAAATAACTAATTCAAAACCTCGAGCAAAA
312781 GCGAGGG
130 GCGAGGG
312788 CCAAATAAAAAATTCTCCTAAATTAA
1 CCAAATAAAAAATTCTCCT-AATTAA
312814 AAGTTTAGGG
Statistics
Matches: 131, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
136 5 0.04
137 72 0.55
138 48 0.37
139 6 0.05
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (136 bp):
CCAAATAAAAAATTCTCCTAATTAAGGACTAAATGTGAAATTAAACCTAAAATGGAGGCTCTAAC
ATTAACCATAATTAATTTTAATCAATTATTGAATTAAATAACTAATTCAAAACCTCGAGCAAAAG
CGAGGG
Found at i:314740 original size:119 final size:119
Alignment explanation
Indices: 314527--314860 Score: 394
Period size: 119 Copynumber: 2.8 Consensus size: 119
314517 GGTTTGAACA
* * * * *
314527 AGTTCTTCTCATTATGAA--CTT-CTCTGCAAATGTTGATCCACATACTTTTATGATGGAATCGA
1 AGTTCTTCTCATTATGAACCCTTCCTTTGAAAATGTTGATCCACATTCTTCTGTGATGGAATCGA
* *
314589 ---ACAATGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATG
66 GTGA-AAT-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCACCGGATG
* * *
314642 AGTTCTTCTCATTACGAACCCTTCCTTTGAAAATGTTGATTCACCTTCTTCTGTGATGGAATCGA
1 AGTTCTTCTCATTATGAACCCTTCCTTTGAAAATGTTGATCCACATTCTTCTGTGATGGAATCGA
* *
314707 GTGAAATGTTGAACAAGTTATTCTCGTTATGAACTTCTTCTCCCTCACCGGATG
66 GTGAAATGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCACCGGATG
* * * * * * *
314761 AGTTATTCTCATTATAAACCCTTCCATTGGAAATGTTGATCCACGTGT-TTCTGTGATGCAATAG
1 AGTTCTTCTCATTATGAACCCTTCCTTTGAAAATGTTGATCCACAT-TCTTCTGTGATGGAATCG
* * *
314825 AGTGAAAGGCTGAACAAGTTCTTCTCATTAGGAACT
65 AGTGAAATGTTGAACAAGTTCTTCTCATTATGAACT
314861 AATTTATTGG
Statistics
Matches: 186, Mismatches: 26, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
115 17 0.09
117 3 0.02
118 34 0.18
119 127 0.68
120 4 0.02
121 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (119 bp):
AGTTCTTCTCATTATGAACCCTTCCTTTGAAAATGTTGATCCACATTCTTCTGTGATGGAATCGA
GTGAAATGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCACCGGATG
Found at i:315123 original size:118 final size:118
Alignment explanation
Indices: 314902--315123 Score: 297
Period size: 118 Copynumber: 1.9 Consensus size: 118
314892 AGGTTGAATA
* * * **
314902 AGTTCTTCTTATTATGAATTCCTTCTCTCTTATCGGATGAGTTTTTCTCATTATGAACCCTTCCA
1 AGTTCTTCTCATTATGAATTCCTTCTCCCTTATCGGATGAGTTCTTCTCATTACAAACCCTTCCA
* *
314967 TTAGAAATGTTGATATACCTCTTTCTATGATGGGATCGAACCAAGGTTAAAAT
66 TTAGAAATGTTGATATACCTCTTTCTATGATAGAATCGAACCAAGGTTAAAAT
* *
315020 AGTTCTTCTCATTATGAACTT-CTTCTCCCTTATCGGCTGAGTTCTTCTCATTACAAACCTTTCC
1 AGTTCTTCTCATTATGAA-TTCCTTCTCCCTTATCGGATGAGTTCTTCTCATTACAAACCCTTCC
* *
315084 ATTATAAATGTTGAT-TCACCT-TCTTCTGTGATAGAATCGA
65 ATTAGAAATGTTGATAT-ACCTCT-TTCTATGATAGAATCGA
315124 GTAAAACGGT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
117 2 0.02
118 86 0.96
119 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (118 bp):
AGTTCTTCTCATTATGAATTCCTTCTCCCTTATCGGATGAGTTCTTCTCATTACAAACCCTTCCA
TTAGAAATGTTGATATACCTCTTTCTATGATAGAATCGAACCAAGGTTAAAAT
Found at i:316840 original size:54 final size:53
Alignment explanation
Indices: 316750--316956 Score: 222
Period size: 54 Copynumber: 3.8 Consensus size: 53
316740 TTACAATTAT
* * *
316750 CATCAAGAAAGCC-TAAAAATTAGGCTTAACTTCTTTAAAAACTCATTTTAAGA
1 CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTTAAAAA-TCATTTGAAGA
* * * * *
316803 CATCAAGAAATCCATGAACATTAGGTTTAGCTCCTTTAAAAATTCATTTGGAA-A
1 CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTTAAAAA-TCATTT-GAAGA
316857 CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTTGAAAAATCATTTGAAGAAA
1 CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTT-AAAAATCATTTGAAG--A
* * *
316913 TCATCAAGAAACTTC-TAAAAATCAGACTTAGCTTCTTTAAAAAT
1 -CATCAAGAAAC-CCATAAAAATTAGGCTTAGCTTCTTTAAAAAT
316957 TTATTTAAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
53 15 0.12
54 68 0.52
55 7 0.05
56 7 0.05
57 32 0.25
58 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (53 bp):
CATCAAGAAACCCATAAAAATTAGGCTTAGCTTCTTTAAAAATCATTTGAAGA
Found at i:316969 original size:111 final size:108
Alignment explanation
Indices: 316692--316972 Score: 284
Period size: 111 Copynumber: 2.6 Consensus size: 108
316682 CGAAGGACTT
* * * * *
316692 ATCATCGAGAAACCTT-TGAAAATCAAACTTGGCTT-TTCAAAAATTCATTTACAATTATCATCA
1 ATCATCAAGAAA-CTTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTA-AA--AACATCA
* *
316755 AGAAAGCCTAAAAATTAGGCTTAACTTCTTTAAAAACTCATTTTAAG
62 AGAAACCCTAAAAATTAGGCTTAACTTCTTTAAAAACTCATTTGAAG
* * * ** * **
316802 A-CATCAAGAAA-TCCATGAACATTAGGTTTAGCTCCTTTAAAAATTCATTTGGAAACATCAAGA
1 ATCATCAAGAAACTTC-TGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTAAAAACATCAAGA
*
316865 AACCCATAAAAATTAGGCTTAGCTTCTTTGAAAAA-TCATTTGAAG
65 AACCC-TAAAAATTAGGCTTAACTTCTTT-AAAAACTCATTTGAAG
* *
316910 AAATCATCAAGAAACTTCTAAAAATCAGACTTAGCTTCTTTAAAAATTTATTTAAAAACATCA
1 --ATCATCAAGAAACTTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTAAAAACATCA
316973 TATTGGGTAG
Statistics
Matches: 136, Mismatches: 26, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
107 14 0.10
108 31 0.23
109 27 0.20
110 16 0.12
111 46 0.34
112 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (108 bp):
ATCATCAAGAAACTTCTGAAAATCAGACTTAGCTTCTTTAAAAATTCATTTAAAAACATCAAGAA
ACCCTAAAAATTAGGCTTAACTTCTTTAAAAACTCATTTGAAG
Found at i:321630 original size:18 final size:18
Alignment explanation
Indices: 321607--321648 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
321597 AGACACCATA
321607 AAAATAGTTAATTTTAAT
1 AAAATAGTTAATTTTAAT
* * *
321625 AAAATATTTTATTTTATT
1 AAAATAGTTAATTTTAAT
321643 AAAATA
1 AAAATA
321649 CCAAGTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
AAAATAGTTAATTTTAAT
Found at i:325173 original size:37 final size:35
Alignment explanation
Indices: 325061--325286 Score: 232
Period size: 35 Copynumber: 6.6 Consensus size: 35
325051 CTTAGTTATT
** *
325061 TATAATATATAGTTTTTAAAACCATTTTAAAAACA
1 TATAATATATAGTTTTTAAAATAATTTTGAAAACA
* *
325096 TATAACATATAGTTTTTAAAATAATTTTGGAAACA
1 TATAATATATAGTTTTTAAAATAATTTTGAAAACA
* * *
325131 TATAATATATAGTTTTAAAAAAATAGTTTTGAAAACG
1 TATAATATATAGTTTT--TAAAATAATTTTGAAAACA
* **
325168 CATAATATATAGTTTTTAAAATGGTTTTGAAAACA
1 TATAATATATAGTTTTTAAAATAATTTTGAAAACA
*
325203 TATAGTATATAGCTTTTTAAAATAATTTTG-----A
1 TATAATATATAG-TTTTTAAAATAATTTTGAAAACA
* * *
325234 -A-AATGTATAGTTTTTAAAATAGTTTTGAAAACG
1 TATAATATATAGTTTTTAAAATAATTTTGAAAACA
*
325267 TATAGTATATAGTTTTTAAA
1 TATAATATATAGTTTTTAAA
325287 TCGATTTTGA
Statistics
Matches: 157, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
28 16 0.10
29 7 0.04
30 1 0.01
31 1 0.01
34 1 0.01
35 86 0.55
36 15 0.10
37 30 0.19
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (35 bp):
TATAATATATAGTTTTTAAAATAATTTTGAAAACA
Found at i:325252 original size:28 final size:28
Alignment explanation
Indices: 325210--325272 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
325200 ACATATAGTA
*
325210 TATAGCTTTTTAAAATAATTTTGAAAATG
1 TATAG-TTTTTAAAATAATTTTGAAAACG
*
325239 TATAGTTTTTAAAATAGTTTTGAAAACG
1 TATAGTTTTTAAAATAATTTTGAAAACG
325267 TATAGT
1 TATAGT
325273 ATATAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 27 0.84
29 5 0.16
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.44
Consensus pattern (28 bp):
TATAGTTTTTAAAATAATTTTGAAAACG
Found at i:325319 original size:13 final size:13
Alignment explanation
Indices: 325314--325338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
325304 TTTTAAACAT
325314 GGTTTTTGAAAAC
1 GGTTTTTGAAAAC
325327 GGTTTTTGAAAA
1 GGTTTTTGAAAA
325339 TATTAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GGTTTTTGAAAAC
Found at i:325390 original size:9 final size:10
Alignment explanation
Indices: 325376--325416 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
325366 GGATAATTTT
325376 TTCTTT-TTA
1 TTCTTTATTA
325385 TTCTTTATTA
1 TTCTTTATTA
325395 TT-TTTATTA
1 TTCTTTATTA
*
325404 TTATTTATATA
1 TTCTTTAT-TA
325415 TT
1 TT
325417 AGGTTATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 15 0.52
10 10 0.34
11 4 0.14
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (10 bp):
TTCTTTATTA
Found at i:328340 original size:14 final size:14
Alignment explanation
Indices: 328317--328354 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
328307 TATGTCTATG
*
328317 TGCAGAGATTT-TT
1 TGCAGGGATTTATT
328330 TCGCAGGGATTTATT
1 T-GCAGGGATTTATT
328345 TGCAGGGATT
1 TGCAGGGATT
328355 ACTTCCCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 18 0.82
15 3 0.14
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (14 bp):
TGCAGGGATTTATT
Found at i:337382 original size:105 final size:100
Alignment explanation
Indices: 337257--337499 Score: 335
Period size: 105 Copynumber: 2.4 Consensus size: 100
337247 CTTACTTAAA
* *
337257 AAAATGTATAATATATAGTTTTTAAAACCATTTTGAAAACATATAGTATATAGTTTTTAAGATAA
1 AAAACGTATAATATATAGTTTTTAAAACCATTTTGAAAACATATAGTATATAGTTTTTAAAATAA
337322 TTTTGAAAACATATAATATGTAGTATTAAAAATAGTTTTG
66 TTTTGAAAACATAT-ATA-GT--T-TTAAAAATAGTTTTG
*** *
337362 AAAACGTATAATATATAGTTTTTAAAATGGTTTTGAAAACATATTGTATATAGTTTTTAAAATAA
1 AAAACGTATAATATATAGTTTTTAAAACCATTTTGAAAACATATAGTATATAGTTTTTAAAATAA
* *
337427 TTTTGAAAACGTATATAGTTTTTAAAATAGTTTTG
66 TTTTGAAAACATATATAGTTTTAAAAATAGTTTTG
* *
337462 AAAACATATAGTATATAGTTTTT-AAACCGATTTTGAAA
1 AAAACGTATAATATATAGTTTTTAAAACC-ATTTTGAAA
337500 TTAGTTATTA
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
99 3 0.02
100 43 0.35
101 1 0.01
103 2 0.02
104 3 0.02
105 72 0.58
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (100 bp):
AAAACGTATAATATATAGTTTTTAAAACCATTTTGAAAACATATAGTATATAGTTTTTAAAATAA
TTTTGAAAACATATATAGTTTTAAAAATAGTTTTG
Found at i:337499 original size:35 final size:35
Alignment explanation
Indices: 337263--337487 Score: 280
Period size: 35 Copynumber: 6.6 Consensus size: 35
337253 TAAAAAAATG
* **
337263 TATAATATATAGTTTTTAAAACCATTTTGAAAACA
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
*
337298 TATAGTATATAGTTTTTAAGATAATTTTGAAAACA
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
* * * * * *
337333 TATAATATGTAGTATTAAAAATAGTTTTGAAAACG
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
* **
337368 TATAATATATAGTTTTTAAAATGGTTTTGAAAACA
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
*
337403 TATTGTATATAGTTTTTAAAATAATTTTGAAAAC-
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
*
337437 ----GTATATAGTTTTTAAAATAGTTTTGAAAACA
1 TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
337468 TATAGTATATAGTTTTTAAA
1 TATAGTATATAGTTTTTAAA
337488 CCGATTTTGA
Statistics
Matches: 164, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.18
35 135 0.82
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (35 bp):
TATAGTATATAGTTTTTAAAATAATTTTGAAAACA
Found at i:337531 original size:13 final size:13
Alignment explanation
Indices: 337510--337539 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
337500 TTAGTTATTA
*
337510 AAAATGGTTTTTG
1 AAAACGGTTTTTG
337523 AAAACGGTTTTTG
1 AAAACGGTTTTTG
337536 AAAA
1 AAAA
337540 TATTAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (13 bp):
AAAACGGTTTTTG
Found at i:342140 original size:18 final size:18
Alignment explanation
Indices: 342117--342152 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
342107 AAGCAAAAGG
342117 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
342135 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
342153 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:342478 original size:20 final size:20
Alignment explanation
Indices: 342455--342494 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
342445 CGCGAAAGTA
342455 AAATTCACAACGCAAAAATC
1 AAATTCACAACGCAAAAATC
**
342475 AAATTCGTAACGCAAAAATC
1 AAATTCACAACGCAAAAATC
342495 GCAACGCGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (20 bp):
AAATTCACAACGCAAAAATC
Found at i:342517 original size:29 final size:29
Alignment explanation
Indices: 342485--342545 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
342475 AAATTCGTAA
342485 CGCAAAAATCGCAACGCGAATTTGACTTT
1 CGCAAAAATCGCAACGCGAATTTGACTTT
*
342514 CGCAATAATCGCAACGCGAATTTGACTTT
1 CGCAAAAATCGCAACGCGAATTTGACTTT
342543 CGC
1 CGC
342546 GTTGCGAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCAAAAATCGCAACGCGAATTTGACTTT
Found at i:344052 original size:21 final size:21
Alignment explanation
Indices: 344026--344102 Score: 68
Period size: 21 Copynumber: 3.7 Consensus size: 21
344016 GTGAATCGGG
344026 CTCTTGAACGATGAGAGGGAC
1 CTCTTGAACGATGAGAGGGAC
* * *
344047 CTCTTGAATGATGACA-TGAGC
1 CTCTTGAACGATGAGAGGGA-C
* *
344068 CTCTTGAACGGTGGGAGAGG-C
1 CTCTTGAACGATGAGAG-GGAC
*
344089 CTCTTGAAGGATGA
1 CTCTTGAACGATGA
344103 CAGGTGAATC
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
20 2 0.05
21 39 0.93
23 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.23
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGGGAC
Found at i:344265 original size:12 final size:12
Alignment explanation
Indices: 344246--344287 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
344236 GGGCCGCTAA
344246 AAATAAATTAAT
1 AAATAAATTAAT
* *
344258 ACATAAATTAGT
1 AAATAAATTAAT
*
344270 AAATAAATAAAT
1 AAATAAATTAAT
344282 AAATAA
1 AAATAA
344288 TGTTGAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (12 bp):
AAATAAATTAAT
Found at i:346095 original size:20 final size:20
Alignment explanation
Indices: 346070--346108 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
346060 TTCGCTTGAG
346070 ATTTTCGTGTTGCGAATTTC
1 ATTTTCGTGTTGCGAATTTC
346090 ATTTTCGTGTTGCGAATTT
1 ATTTTCGTGTTGCGAATTT
346109 AAGTTTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.13, G:0.21, T:0.51
Consensus pattern (20 bp):
ATTTTCGTGTTGCGAATTTC
Found at i:346115 original size:20 final size:20
Alignment explanation
Indices: 346072--346115 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
346062 CGCTTGAGAT
* *
346072 TTTCGTGTTGCGAATTTCAT
1 TTTCGTGTTGCGAATTTAAG
346092 TTTCGTGTTGCGAATTTAAG
1 TTTCGTGTTGCGAATTTAAG
346112 TTTC
1 TTTC
346116 AAAATTCTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.14, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGTGTTGCGAATTTAAG
Found at i:346464 original size:22 final size:22
Alignment explanation
Indices: 346436--346505 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 22
346426 GGAGATAGAT
*
346436 GGATTTCGCTGGAGATTGGGAC
1 GGATTTCGCTGGAGATGGGGAC
*
346458 GGATTTCG-TCAGAGATGGGGAC
1 GGATTTCGCT-GGAGATGGGGAC
*
346480 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCGCTGGAGATGGGGAC
346502 GGAT
1 GGAT
346506 GTCGTTGTAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.02
22 41 0.98
ACGTcount: A:0.20, C:0.14, G:0.43, T:0.23
Consensus pattern (22 bp):
GGATTTCGCTGGAGATGGGGAC
Found at i:346742 original size:20 final size:20
Alignment explanation
Indices: 346698--346746 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
346688 TACAAATTCA
*
346698 CGTTGCAAAATTGGAAACTG
1 CGTTGCGAAATTGGAAACTG
* *
346718 TGTTGCGAAATTGGAAATTG
1 CGTTGCGAAATTGGAAACTG
346738 CGTTGCGAA
1 CGTTGCGAA
346747 TTTGTTGGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.29
Consensus pattern (20 bp):
CGTTGCGAAATTGGAAACTG
Found at i:349800 original size:93 final size:94
Alignment explanation
Indices: 349675--349920 Score: 246
Period size: 106 Copynumber: 2.5 Consensus size: 94
349665 TCATAATGTG
* *
349675 ATTTTTATGTAATTTCATAGCAATCAGACTGGATCGTTATTTCTTTTTAGTTTTCAG-T-A-AAT
1 ATTTTT-TGTAATTTCTTAGCAATCCGACTGGATCGTTATTT-TTTTTAGTTTT-AGTTAACAAT
* *
349737 AGTTTATCCTAGAATTAAGTCATATCTCTGCT
63 AGTTTATCCTAAAATTAAGTCACATCTCTGCT
* *
349769 ATTTTTTGTAATTTCTTGGCAATCCGACTGGATCGTGTCTATTTTGTTGAAGTTTGTTTTAGTTT
1 ATTTTTTGTAATTTCTTAGCAATCCGACTGGATC--GT-TATTTT-TT----TTAGTTTTAG--T
* *
349834 TGAAACAATTGTTTATCGTAAAATTAAGTCACATCTCTGCT
56 T--AACAATAGTTTATCCTAAAATTAAGTCACATCTCTGCT
* *
349875 ATTTTGTGTAATTTCTTAGCAATCCGACTGGATCGTTTTTTTTTTT
1 ATTTTTTGTAATTTCTTAGCAATCCGACTGGATCGTTATTTTTTTT
349921 TTTGGAAATT
Statistics
Matches: 126, Mismatches: 11, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
93 25 0.20
94 6 0.05
95 3 0.02
96 7 0.06
98 2 0.02
99 2 0.02
100 7 0.06
102 3 0.02
103 5 0.04
104 2 0.02
105 1 0.01
106 63 0.50
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (94 bp):
ATTTTTTGTAATTTCTTAGCAATCCGACTGGATCGTTATTTTTTTTAGTTTTAGTTAACAATAGT
TTATCCTAAAATTAAGTCACATCTCTGCT
Found at i:350027 original size:108 final size:105
Alignment explanation
Indices: 349738--350032 Score: 376
Period size: 108 Copynumber: 2.8 Consensus size: 105
349728 TCAGTAAATA
*
349738 GTTTATCCTAGAATTAAGTCATATCTCTGCTATTTTTTGTAATTTCTTGGCAATCCGACTGGATC
1 GTTTATCCTAGAATTAAGTCATATCTCTGCTATTTTGTGTAATTTCTT-GCAATCCGACTGGATC
* * *
349803 GTGTCTATTTTGTTGAAGTTTGTTTTAGTTTTGAAACAATT
65 GTCTCTTTTTTGTTGAAATTTGTTTTAGTTTTGAAACAATT
* * *
349844 GTTTATCGTAAAATTAAGTCACATCTCTGCTATTTTGTGTAATTTCTTAGCAATCCGACTGGATC
1 GTTTATCCTAGAATTAAGTCATATCTCTGCTATTTTGTGTAATTTCTT-GCAATCCGACTGGATC
* * *
349909 GTTTTTTTTTTTTTTGGAAATTTGTTTTAGTTTTGAAACAATT
65 G-TCTCTTTTTTGTT-GAAATTTGTTTTAGTTTTGAAACAATT
* ** * * **
349952 GTTTATCCTTGAATTAAACCATATTTCTACTATTTTGTGTAATTTCTTGTCAGCCCGACTGGATC
1 GTTTATCCTAGAATTAAGTCATATCTCTGCTATTTTGTGTAATTTCTTG-CAATCCGACTGGATC
350017 GTCTAC-TTTTTGTTGA
65 GTCT-CTTTTTTGTTGA
350033 TTTTTCATTA
Statistics
Matches: 162, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
106 63 0.39
107 19 0.12
108 80 0.49
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (105 bp):
GTTTATCCTAGAATTAAGTCATATCTCTGCTATTTTGTGTAATTTCTTGCAATCCGACTGGATCG
TCTCTTTTTTGTTGAAATTTGTTTTAGTTTTGAAACAATT
Found at i:352144 original size:17 final size:17
Alignment explanation
Indices: 352122--352155 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
352112 ATTAATACAG
*
352122 TAAACATTAAATCGCAT
1 TAAACACTAAATCGCAT
*
352139 TAAACACTATATCGCAT
1 TAAACACTAAATCGCAT
352156 GGAAGAAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (17 bp):
TAAACACTAAATCGCAT
Found at i:354305 original size:25 final size:25
Alignment explanation
Indices: 354277--354332 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
354267 ATGAGTTCTA
354277 ATGCCCTGGGTGAGATAATAATTTT
1 ATGCCCTGGGTGAGATAATAATTTT
354302 ATGCCCTGGGTGAGATAATAATTTT
1 ATGCCCTGGGTGAGATAATAATTTT
354327 ATGCCC
1 ATGCCC
354333 CATATACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (25 bp):
ATGCCCTGGGTGAGATAATAATTTT
Found at i:357814 original size:182 final size:182
Alignment explanation
Indices: 357422--357895 Score: 689
Period size: 182 Copynumber: 2.6 Consensus size: 182
357412 GATCCAAATT
* * * * **
357422 AAAAATGTATCGATCCACAACGATATAACAGGTAAAACTATGACAAAACCAGTATTGAAATGATA
1 AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * **
357487 AAACCGGTAAAGCGGTACCGAATATATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
* * *
357552 GTTAATTTAAAAGAGAATCAGTTTTAGCGCCTATAAAGTGTCGATACTTTCA
131 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
* * *
357604 AAAAATATATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACTGGTATCAAAATGATG
1 AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * *
357669 AAACCGGTAAAACGCTTCCGGATATATTGAAAGTGTTGAAACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
357733 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
*
357785 AAAAATGTATCGATCAAACAACAATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
1 AAAAATGTATCGATC-AACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
* * * *
357850 AAAACCGGTAAAATGATACCGGATATATTAAAAATGTCGATACTTT
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTT
357896 CGTAAGTACG
Statistics
Matches: 259, Mismatches: 32, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
181 81 0.31
182 178 0.69
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
Found at i:357864 original size:17 final size:19
Alignment explanation
Indices: 357825--357867 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
357815 AGGTAAAAAT
357825 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
357845 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
357862 ATGATA
1 ATGATA
357868 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:360013 original size:15 final size:15
Alignment explanation
Indices: 359993--360025 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
359983 TGGTTGTATT
*
359993 GGGGGATGACGGTGA
1 GGGGGACGACGGTGA
360008 GGGGGACGACGGTGA
1 GGGGGACGACGGTGA
360023 GGG
1 GGG
360026 AAAACAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.09, G:0.64, T:0.09
Consensus pattern (15 bp):
GGGGGACGACGGTGA
Found at i:360134 original size:21 final size:21
Alignment explanation
Indices: 360108--360148 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
360098 AAGACAATCA
360108 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAT
* *
360129 AGAGTCGAAGATACACTTGA
1 AGAGTCGAAGAGAAACTTGA
360149 GAGGCATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.27, T:0.20
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAT
Found at i:360227 original size:33 final size:33
Alignment explanation
Indices: 360185--360250 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
360175 AAATAGATGG
*
360185 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
*
360218 AGTGGTGAAAGAAGTTGAGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
360251 TCTTAAGATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:360475 original size:15 final size:15
Alignment explanation
Indices: 360455--360509 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
360445 AGAGGGAGGA
360455 GGAAGAAGAAGAGAT
1 GGAAGAAGAAGAGAT
*
360470 GGAAGAA-AAGAGGGAGGA
1 GGAAGAAGAAGA--GA--T
360488 GGAAGAAGAAGAGAT
1 GGAAGAAGAAGAGAT
360503 GGAAGAA
1 GGAAGAA
360510 ATGAGGAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 4 0.12
15 14 0.42
16 2 0.06
17 2 0.06
18 7 0.21
19 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.04
Consensus pattern (15 bp):
GGAAGAAGAAGAGAT
Found at i:360476 original size:33 final size:33
Alignment explanation
Indices: 360438--360525 Score: 151
Period size: 33 Copynumber: 2.7 Consensus size: 33
360428 AAAATATGAA
360438 GAAGAAAAGAGGGAGGAGGAAGAAGAAGAGATG
1 GAAGAAAAGAGGGAGGAGGAAGAAGAAGAGATG
360471 GAAGAAAAGAGGGAGGAGGAAGAAGAAGAGATG
1 GAAGAAAAGAGGGAGGAGGAAGAAGAAGAGATG
*
360504 GAAGAAATGA-GGAGGAAGGAAG
1 GAAGAAAAGAGGGAGG-AGGAAG
360526 TCGATGTCAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
32 5 0.09
33 48 0.91
ACGTcount: A:0.51, C:0.00, G:0.45, T:0.03
Consensus pattern (33 bp):
GAAGAAAAGAGGGAGGAGGAAGAAGAAGAGATG
Found at i:361448 original size:4 final size:4
Alignment explanation
Indices: 361439--361495 Score: 114
Period size: 4 Copynumber: 14.2 Consensus size: 4
361429 TAAGAGATTG
361439 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
361487 GTAT GTAT G
1 GTAT GTAT G
361496 AAAGGACATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:362098 original size:19 final size:20
Alignment explanation
Indices: 362074--362122 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
362064 AATGTAGGGT
362074 TAATTTTGTATTA-GATTTA
1 TAATTTTGTATTATGATTTA
362093 TAATTTTGTA-TATGATTTA
1 TAATTTTGTATTATGATTTA
362112 TAATTTTGTAT
1 TAATTTTGTAT
362123 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.07
19 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (20 bp):
TAATTTTGTATTATGATTTA
Found at i:362700 original size:200 final size:200
Alignment explanation
Indices: 362357--362944 Score: 1113
Period size: 200 Copynumber: 2.9 Consensus size: 200
362347 AATTTACAAT
362357 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
* *
362422 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTATAAGTATACCTGATTT
66 CGAAACCCATAAGTATAATGTAATAGATAATTTTTCAATCTAACCGGTATAAGTATACCGGATTT
*
362487 ATGAGAGAATAGGTGTAATATATATATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAG
131 ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAG
362552 AATGA
196 AATGA
* *
362557 ATGGCAAATAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATGCCAGAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
362622 CGAAACCCATAAGTATAATGTAATAGATAATTTTTCAATCTAACCGGTATAAGTATACCGGATTT
66 CGAAACCCATAAGTATAATGTAATAGATAATTTTTCAATCTAACCGGTATAAGTATACCGGATTT
362687 ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAG
131 ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAG
362752 AATGA
196 AATGA
362757 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
* *
362822 CGAAACCCATAAGTATAATGTAATAGATAATTTTACAATCTAACTGGTATAAGTATACCGGATTT
66 CGAAACCCATAAGTATAATGTAATAGATAATTTTTCAATCTAACCGGTATAAGTATACCGGATTT
362887 ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATT
131 ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATT
362945 TTTAAATATC
Statistics
Matches: 379, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 379 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAGGTGTCGATCCCAGAAACAT
CGAAACCCATAAGTATAATGTAATAGATAATTTTTCAATCTAACCGGTATAAGTATACCGGATTT
ATGAGAGAATAGGTGTAATATATGTATCGACACTTTTTAATTTTGTGTCGATACTATTGGTCCAG
AATGA
Found at i:364405 original size:12 final size:12
Alignment explanation
Indices: 364385--364418 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
364375 CAAGAGGTCA
*
364385 ATGAAGATGAAG
1 ATGACGATGAAG
*
364397 CTGACGATGAAG
1 ATGACGATGAAG
364409 ATGACGATGA
1 ATGACGATGA
364419 TGAGGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.32, T:0.18
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:366035 original size:184 final size:184
Alignment explanation
Indices: 365716--366064 Score: 628
Period size: 184 Copynumber: 1.9 Consensus size: 184
365706 ATATCAGCAT
* *
365716 AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAATTATAATGTA
1 AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCACAATTATAATGTA
* *
365781 ATAGGTAATTTTGTAATATAACCGGTATAGATATACCGATTTTATGAGAGAATAGGTATACAACC
66 ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAGAATAGGTATACAAAC
365846 TATATCGATACTTTTTAATATTGTGTCTC-TACTTTATGTCCAGAATGGATGAAA
131 TATATCGATACTTTTTAATATTGTGTC-CATACTTTATGTCCAGAATGGATGAAA
365900 AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCACAATTATAATGTA
1 AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCACAATTATAATGTA
* *
365965 ATAGGTAATTTTTTAATATAACCGGTATAAATATACCGATTTTATGAGAGAATAGGTCTACAAAC
66 ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAGAATAGGTATACAAAC
366030 TATATCGATACTTTTTAATATTGTGTCCATACTTT
131 TATATCGATACTTTTTAATATTGTGTCCATACTTT
366065 TAAGTAACGC
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 1 0.01
184 157 0.99
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (184 bp):
AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCAGAACCCACAATTATAATGTA
ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAGAATAGGTATACAAAC
TATATCGATACTTTTTAATATTGTGTCCATACTTTATGTCCAGAATGGATGAAA
Found at i:368708 original size:21 final size:21
Alignment explanation
Indices: 368665--368708 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
368655 ATTACATAAC
*
368665 TTTAAAAAAGTATGGATCCCT
1 TTTAAAAAAGTATGGATCACT
368686 TTTATAAAAAGTATGGA-CACT
1 TTTA-AAAAAGTATGGATCACT
368707 TT
1 TT
368709 CAACATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (21 bp):
TTTAAAAAAGTATGGATCACT
Found at i:369148 original size:160 final size:160
Alignment explanation
Indices: 368841--369170 Score: 565
Period size: 160 Copynumber: 2.1 Consensus size: 160
368831 CGGTCTCGAA
* * *
368841 ATGATAAAACATGTAAAGCGCTACCAGTTATGTTGAAAGTGTCGATAATTTATTATATGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCAGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
*
368906 CACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCTAATAAAGTGTCGATACTTTATAAAAATGT
66 -ACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGT
368971 ATCGATCCATAACAATATAACATGTAAAAAT
130 ATCGATCCATAACAATATAACATGTAAAAAT
*
369002 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG-
1 ATGACAAAACAGGTAAAGCGCTACCAGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
*
369066 ACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATG
66 ACTTTTGGAATTTAA-AAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
369130 TATCGATCCATAACAATATAACATGTAAAAAT
129 TATCGATCCATAACAATATAACATGTAAAAAT
369162 ATGACAAAA
1 ATGACAAAA
369171 GCGGTCTCGA
Statistics
Matches: 161, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
158 4 0.02
159 18 0.11
160 79 0.49
161 60 0.37
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (160 bp):
ATGACAAAACAGGTAAAGCGCTACCAGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
ACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTA
TCGATCCATAACAATATAACATGTAAAAAT
Found at i:369319 original size:182 final size:182
Alignment explanation
Indices: 369002--369723 Score: 1229
Period size: 182 Copynumber: 4.0 Consensus size: 182
368992 ATGTAAAAAT
369002 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG-
1 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
* *
369066 -ACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAACGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGAGCCAATAAAGTGTCGATACTTTATAAAAATG
* *
369130 TATCGATCCATAACAATATAACATGTAAAAATATGACAAAAGCGGTCTCGAA
131 TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
*
369182 ATGATAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
* *
369247 CACTTTTGAAATTTAA-AAGAGAAGAAGTTATAGAGCCAATAAAGTGTCGATATTTTATAAAAAT
66 CACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGAGCCAATAAAGTGTCGATACTTTATAAAAAT
*
369311 GTATCGATCCATAACAATATAACAGGTAATAATATGACAAAACCGGTCTCGAA
130 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
*
369364 ATGACAAAACAGGTAAAGCGCTACCAGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
*
369429 CACTTTTGGAATTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
66 CACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGAGCCAATAAAGTGTCGATACTTTATAAAAAT
*
369493 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCAGTCTCGAA
130 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
* * *
369546 ATGAAAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTTGATAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
369611 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCA-CCAATAAAGTGTCGATACTTTATAAAAAT
66 CACTTTTGGAATTAATAAGAGAAGAAGTTATAG-AGCCAATAAAGTGTCGATACTTTATAAAAAT
* * *
369675 GTATCGATCCATAATAATATAACATGTAAAAATATGATAAAACCGGTCT
130 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCT
369724 ATATATGACA
Statistics
Matches: 513, Mismatches: 24, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
180 63 0.12
181 4 0.01
182 442 0.86
183 4 0.01
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
ATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAATTAATAAGAGAAGAAGTTATAGAGCCAATAAAGTGTCGATACTTTATAAAAATG
TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
Found at i:375307 original size:176 final size:176
Alignment explanation
Indices: 375125--375454 Score: 402
Period size: 180 Copynumber: 1.9 Consensus size: 176
375115 TGACAAATTT
*
375125 TGTTTGTAATTATATATTTTAATTATAGTGACAAAATGTA-TAGTCACAAATGA-TTATCTCCA-
1 TGTTTGTAATTATATATTTTAATTATAGTGACAAAATATATTA-TCACAAA-GATTTA-CTCCAT
** * *
375187 ATTTTTGGTA-AAAAAAATCATATAGTGACATGTTCTGTAACTATAAGCT-ATAATTATTGTTAC
63 ATTTTT-GTACAAAAAAATCATATAGTGACAAATTCTGTAACTATAAG-TGATAATAATTATTAC
*
375250 AAAAAA-ATTGACACAACAAATAATGTGATTCAAGTTTTTAGTAAAAAACAA
126 AAAAAACATTGACA-AAAAAATAATGTGATTCAAGTTTTTAGTAAAAAACAA
** *
375301 TGTTTGTCGTTATATGTTTTAATTATAGTGACAAAATATATTATCACAAAGATTTCACTCCATAT
1 TGTTTGTAATTATATATTTTAATTATAGTGACAAAATATATTATCACAAAGATTT-ACTCCATAT
* * * *
375366 TTTTTTACGCCAAAAAAGTCATATAGTGACAAATTTTGTAACTATAAGTGTTAATAATTATTACA
65 TTTTGTA---CAAAAAAATCATATAGTGACAAATTCTGTAACTATAAGTGATAATAATTATTACA
*
375431 AAAAACATTGTCAAAAAAATAATG
127 AAAAACATTGACAAAAAAATAATG
375455 ATATTCACCT
Statistics
Matches: 130, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
175 2 0.02
176 52 0.40
177 9 0.07
179 1 0.01
180 60 0.46
181 6 0.05
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (176 bp):
TGTTTGTAATTATATATTTTAATTATAGTGACAAAATATATTATCACAAAGATTTACTCCATATT
TTTGTACAAAAAAATCATATAGTGACAAATTCTGTAACTATAAGTGATAATAATTATTACAAAAA
ACATTGACAAAAAAATAATGTGATTCAAGTTTTTAGTAAAAAACAA
Found at i:375523 original size:180 final size:175
Alignment explanation
Indices: 375024--375511 Score: 470
Period size: 176 Copynumber: 2.7 Consensus size: 175
375014 CCCCAAATTG
* * * * * *
375024 AAAA-CATATAGTGACAACTTTTGTAACTAAAAGTTTTAGTAACTATGACAGAAAAAATTATCAC
1 AAAATCATATAGTGACAAATTTTGTAACTATAAG-TTTAATAATTATTACA-AAAAAATTGTCAC
* * * * *
375088 AACAAATAATGAGATTTAGATTTGTTGTGACAAATTTTGTTTGTAATTATATATTTTAATTATAG
64 AACAAATAATGATATTCAAATTT-TTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAG
*
375153 TGACAAAATGTA-TAGTCACAAATGATTATCTCCAATTTTTGGTAAAA
128 TGACAAAATATATTAGTCACAAATGATTATCTCCAATTTTTGGTAAAA
** * * * * *
375200 AAAATCATATAGTGACATGTTCTGTAACTATAAGCTATAATTATTGTTACAAAAAAATTGACACA
1 AAAATCATATAGTGACAAATTTTGTAACTATAAG-TTTAATAATTATTACAAAAAAATTGTCACA
* * * ** * *
375265 ACAAATAATG-TGATTCAAGTTTTTAGTAAAAAACAATGTTTGTCGTTATATGTTTTAATTATAG
65 ACAAATAATGAT-ATTCAAATTTTT-GTGACAAATTATGTTTGTAGTTATATATTTTAATTATAG
*
375329 TGACAAAATATATTA-TCACAAA-GATT-TCACTCCATATTTTT-TTACGCCAAA
128 TGACAAAATATATTAGTCACAAATGATTAT--CTCCA-ATTTTTGGTA----AAA
*
375380 AAAGTCATATAGTGACAAATTTTGTAACTATAAGTGTTAATAATTATTACAAAAAACATTGTCA-
1 AAAATCATATAGTGACAAATTTTGTAACTATAAGT-TTAATAATTATTACAAAAAA-ATTGTCAC
* ** * * *
375444 AAAAAATAATGATATTCACCTTTTTGTGACAAATTATATTTGTAGTTATAAATTTTAACTAATAG
64 AACAAATAATGATATTCAAATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAA-TTATAG
375509 TGA
128 TGA
375512 TAGCATATAT
Statistics
Matches: 250, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
174 1 0.00
175 6 0.02
176 89 0.36
177 43 0.17
179 26 0.10
180 78 0.31
181 7 0.03
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (175 bp):
AAAATCATATAGTGACAAATTTTGTAACTATAAGTTTAATAATTATTACAAAAAAATTGTCACAA
CAAATAATGATATTCAAATTTTTGTGACAAATTATGTTTGTAGTTATATATTTTAATTATAGTGA
CAAAATATATTAGTCACAAATGATTATCTCCAATTTTTGGTAAAA
Found at i:377871 original size:16 final size:17
Alignment explanation
Indices: 377850--377890 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
377840 TGACAAATTT
377850 ATTTATCA-AAATAATA
1 ATTTATCACAAATAATA
* *
377866 ATTTATAACAAATATTA
1 ATTTATCACAAATAATA
377883 ATTTATCA
1 ATTTATCA
377891 TCATAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTTATCACAAATAATA
Found at i:377884 original size:17 final size:17
Alignment explanation
Indices: 377842--377888 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
377832 AAAAATTCTG
*
377842 ACAAAT-TT-ATTTATC
1 ACAAATATTAATTTATA
*
377857 A-AAATAATAATTTATA
1 ACAAATATTAATTTATA
377873 ACAAATATTAATTTAT
1 ACAAATATTAATTTAT
377889 CATCATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 2 0.08
16 7 0.27
17 13 0.50
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
ACAAATATTAATTTATA
Found at i:378033 original size:180 final size:179
Alignment explanation
Indices: 377792--378133 Score: 508
Period size: 180 Copynumber: 1.9 Consensus size: 179
377782 CTACAAAAAT
** **
377792 TTATATCAAATTTATTTTGTCACAATATTTTGTCAAAATAAAAAATTCTGACAAATTTATTT-AT
1 TTATATCAAATTTATTTCCTCACAATATTTTGAAAAAATAAAAAATTCTGACAAATTTATTTAAT
* * *
377856 CAAAATAATAATTTATAACAAATATTAATTTATCATCATAAAAAATTGTGACAAGTAATATTCTT
66 CAAAATAACAATTT-TAACAAATATTAATTTATCATCATAAAAAATTATGACAAATAATATTCTT
*
377921 TCACAATAACAAATTGCAACAAAGTGATTTAATTTAATCAAAGTAAACAG
130 TCACAATAACAAATTGCAACAAAATGATTTAATTTAATCAAAGTAAACAG
* * *
377971 TTATGTCAAATTTATTTCCTCTCAATATTTTGAAAAAAATAAAAAA-TCATGATAAATTTATTTA
1 TTATATCAAATTTATTTCCTCACAATATTTTG-AAAAAATAAAAAATTC-TGACAAATTTATTTA
* *
378035 ATCAAAATAACAATTTTAACAAATATTAATTTCTCATTATAAAAAATTATGACAAATAATATTCT
64 ATCAAAATAACAATTTTAACAAATATTAATTTATCATCATAAAAAATTATGACAAATAATATTCT
* *
378100 TTCACAATAACAAATTGTAACAAAATTATTTAAT
129 TTCACAATAACAAATTGCAACAAAATGATTTAAT
378134 CACAGTAAAA
Statistics
Matches: 145, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
179 30 0.21
180 100 0.69
181 15 0.10
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.38
Consensus pattern (179 bp):
TTATATCAAATTTATTTCCTCACAATATTTTGAAAAAATAAAAAATTCTGACAAATTTATTTAAT
CAAAATAACAATTTTAACAAATATTAATTTATCATCATAAAAAATTATGACAAATAATATTCTTT
CACAATAACAAATTGCAACAAAATGATTTAATTTAATCAAAGTAAACAG
Found at i:383366 original size:22 final size:22
Alignment explanation
Indices: 383313--383368 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
383303 TTATATTTGT
*
383313 ATATTATTTTTATATAATCTAT
1 ATATTATTTTTATATAATCTAA
*
383335 GTA-TATTTTTTATATATAT-TAA
1 ATATTA-TTTTTATATA-ATCTAA
383357 ATATTATTTTTA
1 ATATTATTTTTA
383369 AAATTCATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 2 0.07
22 22 0.79
23 4 0.14
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATTATTTTTATATAATCTAA
Found at i:384837 original size:2 final size:2
Alignment explanation
Indices: 384830--384906 Score: 126
Period size: 2 Copynumber: 40.5 Consensus size: 2
384820 TACAACTTAT
384830 TA TA TA TA TA T- TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
384870 TA TA TA TA TA TA TA TA TA TA TA TA T- TA T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
384907 TATTATTACA
Statistics
Matches: 71, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
1 4 0.06
2 67 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:385588 original size:69 final size:70
Alignment explanation
Indices: 385459--385594 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 70
385449 TCCCTTGCAT
*
385459 TGAAAATGGATATAAGAAAATGTTCAAAATTTTGTAACAATATTTGTTCAAACATAATTGTGTTT
1 TGAAAATGGATATAAGAAAATGTTCAAAATTTTGTAACAATATTTGTTCAAACATAATTGTGCTT
385524 GACAG
66 GACAG
* *
385529 TGAAAATGGATATAAGAAAATGTTC-AAA-TTTGTGAATAATATTTGTTCAAACATTATTGTGCT
1 TGAAAATGGATATAAGAAAATGTTCAAAATTTTGT-AACAATATTTGTTCAAACATAATTGTGCT
385592 TGA
65 TGA
385595 TACTATTCAC
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
68 5 0.08
69 32 0.52
70 25 0.40
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (70 bp):
TGAAAATGGATATAAGAAAATGTTCAAAATTTTGTAACAATATTTGTTCAAACATAATTGTGCTT
GACAG
Found at i:389272 original size:21 final size:21
Alignment explanation
Indices: 389246--389308 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
389236 GTCGAGGGTT
389246 TCATAGGTCCTTCGGGATAAC
1 TCATAGGTCCTTCGGGATAAC
*
389267 TCATAGGTCCTTCGGGACATAC
1 TCATAGGTCCTTCGGGATA-AC
* *
389289 TCACAGGTCCTTCGTGATAA
1 TCATAGGTCCTTCGGGATAA
389309 ATTTTATATG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 19 0.51
22 18 0.49
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (21 bp):
TCATAGGTCCTTCGGGATAAC
Found at i:389296 original size:22 final size:21
Alignment explanation
Indices: 389250--389302 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 21
389240 AGGGTTTCAT
* *
389250 AGGTCCTTCGGGATAACTCAT
1 AGGTCCTTCGGGACAACTCAC
389271 AGGTCCTTCGGGACATACTCAC
1 AGGTCCTTCGGGACA-ACTCAC
389293 AGGTCCTTCG
1 AGGTCCTTCG
389303 TGATAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (21 bp):
AGGTCCTTCGGGACAACTCAC
Found at i:396006 original size:22 final size:21
Alignment explanation
Indices: 395977--396021 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
395967 TGTCCGTTGA
*
395977 GACAACTCTTAGG-TCTTTCGG
1 GACAACTCATAGGTTC-TTCGG
395998 GACATACTCATAGGTTCTTCGG
1 GACA-ACTCATAGGTTCTTCGG
396020 GA
1 GA
396022 TAAATTTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 15 0.71
23 2 0.10
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (21 bp):
GACAACTCATAGGTTCTTCGG
Found at i:396736 original size:18 final size:18
Alignment explanation
Indices: 396713--396755 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
396703 GGTTCATGGG
396713 ATGCATCGTAGTACACTC
1 ATGCATCGTAGTACACTC
396731 ATGCATCGTAGTACACTC
1 ATGCATCGTAGTACACTC
396749 ATGCATC
1 ATGCATC
396756 TTCGACAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (18 bp):
ATGCATCGTAGTACACTC
Found at i:397699 original size:13 final size:14
Alignment explanation
Indices: 397681--397762 Score: 58
Period size: 17 Copynumber: 5.5 Consensus size: 14
397671 TTCATTGAAA
*
397681 AACCGATAAA-CCG
1 AACCGAAAAACCCG
397694 AACCGAAAAACCCG
1 AACCGAAAAACCCG
* *
397708 AACCGTTATAAAAACTG
1 AACCG--A-AAAACCCG
*
397725 AACCGAAAAACTCG
1 AACCGAAAAACCCG
*
397739 AACCGTTATAAAAACCG
1 AACCG--A-AAAACCCG
397756 AACCGAA
1 AACCGAA
397763 CCGAAAAAAC
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
13 9 0.17
14 19 0.35
15 2 0.04
16 2 0.04
17 22 0.41
ACGTcount: A:0.49, C:0.27, G:0.13, T:0.11
Consensus pattern (14 bp):
AACCGAAAAACCCG
Found at i:397727 original size:17 final size:17
Alignment explanation
Indices: 397707--397760 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
397697 CGAAAAACCC
397707 GAACCGTTATAAAAACT
1 GAACCGTTATAAAAACT
397724 GAACCG----AAAAACT
1 GAACCGTTATAAAAACT
*
397737 CGAACCGTTATAAAAACC
1 -GAACCGTTATAAAAACT
397755 GAACCG
1 GAACCG
397761 AACCGAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
13 7 0.23
14 6 0.19
17 12 0.39
18 6 0.19
ACGTcount: A:0.46, C:0.24, G:0.15, T:0.15
Consensus pattern (17 bp):
GAACCGTTATAAAAACT
Found at i:397728 original size:31 final size:31
Alignment explanation
Indices: 397688--397762 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
397678 AAAAACCGAT
397688 AAACCGAACCGAAAAACCCGAACCGTTATAA
1 AAACCGAACCGAAAAACCCGAACCGTTATAA
* *
397719 AAACTGAACCGAAAAACTCGAACCGTTATAA
1 AAACCGAACCGAAAAACCCGAACCGTTATAA
397750 AAACCGAACCGAA
1 AAACCGAACCGAA
397763 CCGAAAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.27, G:0.13, T:0.11
Consensus pattern (31 bp):
AAACCGAACCGAAAAACCCGAACCGTTATAA
Found at i:398057 original size:26 final size:27
Alignment explanation
Indices: 398010--398079 Score: 115
Period size: 26 Copynumber: 2.6 Consensus size: 27
398000 AAAATATTTT
*
398010 TTAAAAACTATTTTTTATTTTTTATAG
1 TTAAAAAATATTTTTTATTTTTTATAG
*
398037 TTACAAAATATTTTTTA-TTTTTATAG
1 TTAAAAAATATTTTTTATTTTTTATAG
398063 TTAAAAAATATTTTTTA
1 TTAAAAAATATTTTTTA
398080 GTATTTGATA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 25 0.62
27 15 0.38
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (27 bp):
TTAAAAAATATTTTTTATTTTTTATAG
Found at i:400446 original size:17 final size:17
Alignment explanation
Indices: 400392--400446 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
400382 AAAGATATAG
* * *
400392 AAAAAAGAAAAAAAACA
1 AAAAAATAAGAAAAAGA
*
400409 ACAAAATAAGAAAAAGA
1 AAAAAATAAGAAAAAGA
400426 AAAAAATAAGAAAGAAGA
1 AAAAAATAAGAAA-AAGA
400444 AAA
1 AAA
400447 TAGACAGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 25 0.78
18 7 0.22
ACGTcount: A:0.82, C:0.04, G:0.11, T:0.04
Consensus pattern (17 bp):
AAAAAATAAGAAAAAGA
Found at i:402516 original size:43 final size:43
Alignment explanation
Indices: 402455--402667 Score: 349
Period size: 43 Copynumber: 5.0 Consensus size: 43
402445 TTTTATAAGT
*
402455 AGCTTGAGGAACCAACGTGATATGTAGGGGTTCCTTGATGAGA
1 AGCTTGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
*
402498 AGCTTGAGAGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
1 AGCTTGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
**
402541 AGCTTGAGGGACCAATATGATATGTAGGGGTTCCTTGATGAGA
1 AGCTTGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
*
402584 AGCTTGAGGGACTAACGTGATATGTAGGGGTTCCTTGATGAG-
1 AGCTTGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
402626 A-CATTCGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGA
1 AGC-TT-GAGGGACCAACGTGATATGTAGGGGTTCCTTGATGA
402668 AAACTAAGAA
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
41 1 0.01
42 3 0.02
43 155 0.97
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (43 bp):
AGCTTGAGGGACCAACGTGATATGTAGGGGTTCCTTGATGAGA
Found at i:402914 original size:33 final size:34
Alignment explanation
Indices: 402827--402932 Score: 151
Period size: 34 Copynumber: 3.1 Consensus size: 34
402817 GATCAACACT
* *
402827 AACATTTCAAATCCATCATAGAAGGAGGTGGATC
1 AACATTTCAAATCCATCACAGAAGGAGATGGATC
402861 AACATTTCAAATCCATCACAGAAGGAGATGGATC
1 AACATTTCAAATCCATCACAGAAGGAGATGGATC
* * * *
402895 GACATTT-TAATCCAGCACAGAAGGAGTTGGATC
1 AACATTTCAAATCCATCACAGAAGGAGATGGATC
402928 AACAT
1 AACAT
402933 CAATTTTTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
33 27 0.42
34 38 0.58
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23
Consensus pattern (34 bp):
AACATTTCAAATCCATCACAGAAGGAGATGGATC
Found at i:402973 original size:20 final size:20
Alignment explanation
Indices: 402948--402986 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
402938 TTTTGCTTGA
402948 TTCTATCACAGAAGGAGGTT
1 TTCTATCACAGAAGGAGGTT
402968 TTCTATCACAGAAGGAGGT
1 TTCTATCACAGAAGGAGGT
402987 AGATCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (20 bp):
TTCTATCACAGAAGGAGGTT
Found at i:406082 original size:28 final size:28
Alignment explanation
Indices: 406051--406104 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
406041 ATGGAAATAT
406051 TAATTATTAA-AATATTTA-ATATATATAA
1 TAATT-TTAATAATATTTATAT-TATATAA
406079 TAATTTTAATAATATTTATATTATAT
1 TAATTTTAATAATATTTATATTATAT
406105 GTAATCAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.17
28 18 0.75
29 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
TAATTTTAATAATATTTATATTATATAA
Found at i:406582 original size:29 final size:28
Alignment explanation
Indices: 406548--406651 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 28
406538 ATTTTTCAGA
406548 AATGTAATTTATTTTACGTAAAACAGTTT
1 AATGTAATTTATTTTACGT-AAACAGTTT
* *
406577 AATGT-ATTCATTTTACGT--A-ATTTT
1 AATGTAATTTATTTTACGTAAACAGTTT
*
406601 CATGTAATTTATTTTACGTAAACTAGTTT
1 AATGTAATTTATTTTACGTAAAC-AGTTT
* *
406630 TA-GATAAGTTATTTTACGTAAA
1 AATG-TAATTTATTTTACGTAAA
406652 TTATTTTTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
24 8 0.13
25 13 0.21
27 1 0.02
28 13 0.21
29 27 0.44
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.47
Consensus pattern (28 bp):
AATGTAATTTATTTTACGTAAACAGTTT
Found at i:406655 original size:14 final size:14
Alignment explanation
Indices: 406604--406658 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
406594 TAATTTTCAT
*
406604 GTAATTTATTTTAC
1 GTAAATTATTTTAC
*
406618 GTAAACTAGTTTTA-
1 GTAAATTA-TTTTAC
*
406632 GATAAGTTATTTTAC
1 G-TAAATTATTTTAC
406647 GTAAATTATTTT
1 GTAAATTATTTT
406659 TCAGAAAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
14 22 0.67
15 11 0.33
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.51
Consensus pattern (14 bp):
GTAAATTATTTTAC
Found at i:410728 original size:13 final size:13
Alignment explanation
Indices: 410710--410734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
410700 TTCTTTTGTT
410710 TTAAGTACCTAAA
1 TTAAGTACCTAAA
410723 TTAAGTACCTAA
1 TTAAGTACCTAA
410735 TTTTGTGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
TTAAGTACCTAAA
Found at i:411611 original size:64 final size:64
Alignment explanation
Indices: 411527--411650 Score: 171
Period size: 64 Copynumber: 1.9 Consensus size: 64
411517 GGTTTTTTCG
* * *
411527 GTTAGATTTTTTTAACATTTT-TCTTATTTGATCTTTATGTGATTTAGGTGGCTAGTTTTTTTTT
1 GTTAGATTTTTTTAACATTTTCT-TTATTTGATCTTTATGTGATCTAGATGAC-AGTTTTTTTTT
411591 T
64 T
* *
411592 GTTAGA-TTTTTTAACATTTTCTTTCTTTGGTCTTTATGTGATCTAGATGACAGTTTTTT
1 GTTAGATTTTTTTAACATTTTCTTTATTTGATCTTTATGTGATCTAGATGACAGTTTTTT
411651 GTCAATAGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
63 8 0.15
64 38 0.72
65 7 0.13
ACGTcount: A:0.18, C:0.08, G:0.15, T:0.59
Consensus pattern (64 bp):
GTTAGATTTTTTTAACATTTTCTTTATTTGATCTTTATGTGATCTAGATGACAGTTTTTTTTTT
Found at i:412233 original size:2 final size:2
Alignment explanation
Indices: 412226--412256 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
412216 CATAGTTTGA
412226 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
412257 AAACCACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:412849 original size:26 final size:26
Alignment explanation
Indices: 412798--412850 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
412788 AAAAAGTCAA
*
412798 AAATGTTAGAAAATATAATAATAAAC
1 AAATGTTAGAAAATATAAGAATAAAC
412824 AAATGTTAGATAAATCA-AAGAA-AAAC
1 AAATGTTAGA-AAAT-ATAAGAATAAAC
412850 A
1 A
412851 TAAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 15 0.62
27 8 0.33
28 1 0.04
ACGTcount: A:0.62, C:0.06, G:0.09, T:0.23
Consensus pattern (26 bp):
AAATGTTAGAAAATATAAGAATAAAC
Found at i:412864 original size:19 final size:20
Alignment explanation
Indices: 412835--412896 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
412825 AATGTTAGAT
412835 AAATCAAAGAA-AAACATAAA
1 AAATCAAAGAATAAA-ATAAA
412855 AAAT-AAAGAATAAAATAAAA
1 AAATCAAAGAATAAAAT-AAA
*
412875 TAAATCAAAAGGA-AAAATAAA
1 -AAATC-AAAGAATAAAATAAA
412896 A
1 A
412897 TTTAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
19 8 0.22
20 11 0.31
21 7 0.19
22 5 0.14
23 5 0.14
ACGTcount: A:0.76, C:0.05, G:0.06, T:0.13
Consensus pattern (20 bp):
AAATCAAAGAATAAAATAAA
Found at i:413147 original size:15 final size:15
Alignment explanation
Indices: 413129--413179 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
413119 AAAAATATAT
413129 ATAAAAATAATGAAA
1 ATAAAAATAATGAAA
* *
413144 ATAAAAAAAATAAAA
1 ATAAAAATAATGAAA
* *
413159 AT-TAAATAAAGAAA
1 ATAAAAATAATGAAA
*
413173 AGAAAAA
1 ATAAAAA
413180 GAAAAATGAG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 9 0.33
15 18 0.67
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (15 bp):
ATAAAAATAATGAAA
Found at i:413153 original size:9 final size:9
Alignment explanation
Indices: 413095--413281 Score: 63
Period size: 9 Copynumber: 19.2 Consensus size: 9
413085 GAACAGAAAG
*
413095 ATAAAACAA
1 ATAAAAAAA
413104 ATAAAAAAA
1 ATAAAAAAA
413113 GATGAAAAAAA
1 -AT-AAAAAAA
*
413124 TATATATAAAA
1 -ATA-AAAAAA
**
413135 ATAATGAAA
1 ATAAAAAAA
413144 ATAAAAAAA
1 ATAAAAAAA
413153 ATAAAAATTAA
1 ATAAAAA--AA
*
413164 ATAAAGAAA
1 ATAAAAAAA
*
413173 AGAAAAAGAA
1 ATAAAAA-AA
* * *
413183 A-AATGAGAG
1 ATAA-AAAAA
* *
413192 AGAGAAAAA
1 ATAAAAAAA
*
413201 GTCAAAGGAAAA
1 AT-AAA--AAAA
413213 ATAAATAAATA
1 ATAAA-AAA-A
413224 A-AAAAAGAA
1 ATAAAAA-AA
*
413233 ATCAAAGAAA
1 AT-AAAAAAA
**
413243 ACGAAAAAA
1 ATAAAAAAA
*
413252 ATGAAAAAA
1 ATAAAAAAA
*
413261 ATAAGAAAA
1 ATAAAAAAA
413270 ATAAAATAAA
1 ATAAAA-AAA
413280 AT
1 AT
413282 GGAAAATAAT
Statistics
Matches: 133, Mismatches: 29, Indels: 31
0.69 0.15 0.16
Matches are distributed among these distances:
9 69 0.52
10 28 0.21
11 31 0.23
12 5 0.04
ACGTcount: A:0.74, C:0.02, G:0.10, T:0.13
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:413167 original size:20 final size:20
Alignment explanation
Indices: 413142--413179 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
413132 AAAATAATGA
*
413142 AAATAAAAAAAATAAAAATT
1 AAATAAAAAAAAGAAAAATT
*
413162 AAATAAAGAAAAGAAAAA
1 AAATAAAAAAAAGAAAAA
413180 GAAAAATGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (20 bp):
AAATAAAAAAAAGAAAAATT
Found at i:414610 original size:4 final size:4
Alignment explanation
Indices: 414601--414653 Score: 72
Period size: 4 Copynumber: 13.0 Consensus size: 4
414591 AACAATAATA
*
414601 AAAT AAAT AAAT AAAT -AAT AAAT GAAAT AAAAT AAAT AAAT AGAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT
414650 AAAT
1 AAAT
414654 TAAAAACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
3 3 0.07
4 33 0.75
5 8 0.18
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:414631 original size:29 final size:30
Alignment explanation
Indices: 414597--414653 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
414587 AATAAACAAT
414597 AATAAAATAAATAAATAAAT-AATAAATGA
1 AATAAAATAAATAAATAAATAAATAAATGA
*
414626 AATAAAATAAATAAATAGATAAATAAAT
1 AATAAAATAAATAAATAAATAAATAAAT
414654 TAAAAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (30 bp):
AATAAAATAAATAAATAAATAAATAAATGA
Found at i:414732 original size:38 final size:38
Alignment explanation
Indices: 414653--414950 Score: 394
Period size: 37 Copynumber: 8.0 Consensus size: 38
414643 GATAAATAAA
* * * *
414653 TTAAAAAC-ATTTTTTAAAACTATA-CA-ATATATGTT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
* * *
414688 TTAAAAAATAATTTTCAACACCATATAATATATAT-TT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
* *
414725 TTAAAAAATAATTTTCAAAACTATATAATATAT-TTTT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
*
414762 TTTAAAACTAATTTTCAAAACTATATAATATATATATT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
414800 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
414838 TTAAAAACTAATTTTCAAAACTATATAATATATAT-TT
1 TTAAAAACTAATTTTCAAAACTATATAATATATATATT
*
414875 TTAAAAACTAATTTTCAAAACTATATAATATATATGTTT
1 TTAAAAACTAATTTTCAAAACTATATAATATATAT-ATT
** * *
414914 TTCAAAAA-TGTTTTTAAAAACTATATATTATATATAT
1 TT-AAAAACTAATTTTCAAAACTATATAATATATATAT
414951 ATATATATAT
Statistics
Matches: 238, Mismatches: 17, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
35 7 0.03
36 13 0.05
37 104 0.44
38 82 0.34
39 27 0.11
40 5 0.02
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.44
Consensus pattern (38 bp):
TTAAAAACTAATTTTCAAAACTATATAATATATATATT
Found at i:414816 original size:75 final size:75
Alignment explanation
Indices: 414791--414948 Score: 237
Period size: 75 Copynumber: 2.1 Consensus size: 75
414781 ACTATATAAT
* *
414791 ATATATATTT-TAAAAACTAATTTTCAAAACTATATAATATATATATTTTAAAAACTAATTTTCA
1 ATATATATTTTTAAAAACTAATTTTCAAAACTATATAATATATATTTTTTAAAAAATAATTTTCA
414855 AAACTATATA
66 AAACTATATA
* ** *
414865 ATATATATTTTTAAAAACTAATTTTCAAAACTATATAATATATATGTTTTTCAAAAATGTTTTTA
1 ATATATATTTTTAAAAACTAATTTTCAAAACTATATAATATATAT-TTTTTAAAAAATAATTTTC
414930 AAAACTATATA
65 AAAACTATATA
*
414941 TTATATAT
1 ATATATAT
414949 ATATATATAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
74 10 0.13
75 34 0.45
76 31 0.41
ACGTcount: A:0.47, C:0.07, G:0.01, T:0.44
Consensus pattern (75 bp):
ATATATATTTTTAAAAACTAATTTTCAAAACTATATAATATATATTTTTTAAAAAATAATTTTCA
AAACTATATA
Found at i:414985 original size:36 final size:36
Alignment explanation
Indices: 414945--415082 Score: 99
Period size: 35 Copynumber: 3.9 Consensus size: 36
414935 TATATATTAT
**
414945 ATATATATATATATATTTTTTAAA-GTTTTCAAAACA
1 ATATATATATATATATTTTAAAAATGTTTTCAAAA-A
*
414981 ATATA-ATATATAT-TTTCAAAAATGTTTTCAAAAA
1 ATATATATATATATATTTTAAAAATGTTTTCAAAAA
* * * * *
415015 CTATATAT-TATTTATTTTCAAAAT-ATTTAAAAAA
1 ATATATATATATATATTTTAAAAATGTTTTCAAAAA
* * *
415049 ACCCATATAT-TATATAATTTTCAAAATGATTTCA
1 A--TATATATATATAT-ATTTTAAAAATGTTTTCA
415083 GGATCGTGGT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
34 23 0.28
35 28 0.34
36 15 0.18
37 11 0.13
38 5 0.06
ACGTcount: A:0.46, C:0.08, G:0.02, T:0.44
Consensus pattern (36 bp):
ATATATATATATATATTTTAAAAATGTTTTCAAAAA
Found at i:415008 original size:35 final size:35
Alignment explanation
Indices: 414947--415074 Score: 109
Period size: 36 Copynumber: 3.6 Consensus size: 35
414937 TATATTATAT
**
414947 ATATATATATATATTTT-TTAAAGTTTTC-AAAACA
1 ATATA-ATATATATTTTCAAAAAGTTTTCAAAAACA
*
414981 ATATAATATATATTTTCAAAAATGTTTTCAAAAACT
1 ATATAATATATATTTTCAAAAA-GTTTTCAAAAACA
* * ** *
415017 ATATATTATTTATTTTCAAAATA-TTTAAAAAAACCC
1 ATATAATATATATTTTCAAAA-AGTTTTCAAAAA-CA
*
415053 ATATATTATATAATTTTCAAAA
1 ATATAATATAT-ATTTTCAAAA
415075 TGATTTCAGG
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
33 11 0.14
34 8 0.10
35 14 0.18
36 35 0.44
37 11 0.14
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.44
Consensus pattern (35 bp):
ATATAATATATATTTTCAAAAAGTTTTCAAAAACA
Found at i:415305 original size:24 final size:24
Alignment explanation
Indices: 415273--415351 Score: 158
Period size: 24 Copynumber: 3.3 Consensus size: 24
415263 TATTACTAGA
415273 CCGTTTCATTGGGCTGGTTCAGGC
1 CCGTTTCATTGGGCTGGTTCAGGC
415297 CCGTTTCATTGGGCTGGTTCAGGC
1 CCGTTTCATTGGGCTGGTTCAGGC
415321 CCGTTTCATTGGGCTGGTTCAGGC
1 CCGTTTCATTGGGCTGGTTCAGGC
415345 CCGTTTC
1 CCGTTTC
415352 TTTGATTGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.08, C:0.27, G:0.32, T:0.34
Consensus pattern (24 bp):
CCGTTTCATTGGGCTGGTTCAGGC
Found at i:415404 original size:4 final size:4
Alignment explanation
Indices: 415397--415449 Score: 72
Period size: 4 Copynumber: 13.0 Consensus size: 4
415387 AACAATAATA
*
415397 AAAT AAAT AAAT AAAT -AAT AAAT GAAAT AAAAT AAAT AAAT AGAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT -AAAT AAAT AAAT AAAT AAAT
415446 AAAT
1 AAAT
415450 TAAAAACATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
3 3 0.07
4 33 0.75
5 8 0.18
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:415426 original size:29 final size:30
Alignment explanation
Indices: 415393--415449 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
415383 AACAAACAAT
415393 AATAAAATAAATAAATAAAT-AATAAATGA
1 AATAAAATAAATAAATAAATAAATAAATGA
*
415422 AATAAAATAAATAAATAGATAAATAAAT
1 AATAAAATAAATAAATAAATAAATAAAT
415450 TAAAAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (30 bp):
AATAAAATAAATAAATAAATAAATAAATGA
Found at i:415432 original size:25 final size:25
Alignment explanation
Indices: 415397--415454 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 25
415387 AACAATAATA
415397 AAAT-AAATAAATAAATA-ATAAAT
1 AAATAAAATAAATAAATAGATAAAT
415420 GAAATAAAATAAATAAATAGATAAAT
1 -AAATAAAATAAATAAATAGATAAAT
415446 AAATTAAAA
1 AAA-TAAAA
415455 ACATTTTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 4 0.13
25 16 0.52
26 11 0.35
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.24
Consensus pattern (25 bp):
AAATAAAATAAATAAATAGATAAAT
Found at i:415520 original size:38 final size:38
Alignment explanation
Indices: 415478--415927 Score: 476
Period size: 38 Copynumber: 12.2 Consensus size: 38
415468 AAACTATACA
* * * *
415478 ATATATGTTTTAAAAAATAATTTTCAACACCATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
* *
415516 ATATAT-TTTTAAAAAATAATTTAC-AAACTATAT-A-
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
415550 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
415588 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
415626 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
*
415664 ATATATATTTTAAAAACTAATTTTCAAAACTATATGAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
* *
415702 ATATAT-TTTTTAAAACTAATTTTAAAAACTATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
** *
415739 ATATATATTTTTCAAAAA-TGTTTTTAAAAACTATATATTAT
1 ATATATA-TTTT-AAAAACTAATTTTCAAAACTATATA--AT
*
415780 ATATATATTTTTAAAAA--AA--ATCAAAAC-AT-T-AT
1 ATATATA-TTTTAAAAACTAATTTTCAAAACTATATAAT
* *
415812 AATATATATTTTCAAAACT-GTTTTCAAAAACTATAT-AT
1 -ATATATATTTTAAAAACTAATTTTC-AAAACTATATAAT
* * ** *
415850 -TATTTATTTTCAAAA-T-ATTTAAAAAATCTATATATT
1 ATATATATTTTAAAAACTAATTTTCAAAA-CTATATAAT
* *
415886 ATATA-ATTTTCAAAA-TGA-TTTC-AAACTATATAAT
1 ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
415920 ATATATAT
1 ATATATAT
415928 ACAAATAAAA
Statistics
Matches: 362, Mismatches: 28, Indels: 47
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.03
33 7 0.02
34 23 0.06
35 35 0.10
36 51 0.14
37 64 0.18
38 128 0.35
39 21 0.06
40 9 0.02
41 14 0.04
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.43
Consensus pattern (38 bp):
ATATATATTTTAAAAACTAATTTTCAAAACTATATAAT
Found at i:419868 original size:29 final size:29
Alignment explanation
Indices: 419791--419874 Score: 69
Period size: 29 Copynumber: 2.9 Consensus size: 29
419781 GTTAAATTAC
* * *
419791 TATTTTATAAATTTTAATAATTTAATAATT
1 TATTTTATAATTTTTAATAA-TTAAAAAAT
* ** * * *
419821 TAATAAAAAATATTCAATAATTAAAAAAT
1 TATTTTATAATTTTTAATAATTAAAAAAT
*
419850 TATTTTATAATTTTTAATATTTAAA
1 TATTTTATAATTTTTAATAATTAAA
419875 TAATAAAATA
Statistics
Matches: 38, Mismatches: 16, Indels: 1
0.69 0.29 0.02
Matches are distributed among these distances:
29 25 0.66
30 13 0.34
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
TATTTTATAATTTTTAATAATTAAAAAAT
Found at i:420752 original size:20 final size:19
Alignment explanation
Indices: 420729--420774 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
420719 CGATATACCA
420729 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
420749 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
420769 GGTAAA
1 GGTAAA
420775 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:420918 original size:20 final size:19
Alignment explanation
Indices: 420895--420941 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
420885 CGATATAACA
*
420895 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
420915 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
420935 GGTAAAA
1 GGTAAAA
420942 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:423286 original size:33 final size:33
Alignment explanation
Indices: 423244--423309 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
423234 AAATAGATGG
*
423244 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
423277 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
423310 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:425116 original size:19 final size:19
Alignment explanation
Indices: 425092--425140 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
425082 AATGTCGAGT
425092 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
425111 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
425130 TATTTTTGTAT
1 TAATTTTGTAT
425141 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:426075 original size:394 final size:396
Alignment explanation
Indices: 425259--427609 Score: 4502
Period size: 394 Copynumber: 5.9 Consensus size: 396
425249 CAATATGGCC
425259 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCGATCCCAAAATCATCGAAC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
*
425324 CCAAAAGTATAATGTAATATGTAATTTTTTAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
425389 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
425454 GGAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
195 GGAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
425519 AAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
260 -AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
425584 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAAT
324 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAAT
425649 GAATGGAA
389 GAATGGAA
425657 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
425722 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
425787 GATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
425852 G-AAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCATCGA
196 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
425915 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
425980 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
426045 ATGGAA
391 ATGGAA
426051 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
426116 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
426181 GATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
426246 GAAAACATGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
426309 ACCCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
426373 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
426438 ATGGAA
391 ATGGAA
426444 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
426508 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
426573 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
426638 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-
*
426703 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAATTATACCGGTTTTATG
260 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
426768 AGAGGATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
325 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAAT
426833 GAATGGAA
389 GAATGGAA
*
426841 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAGAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
426906 CAAAAGTATAATGTAATATGTAATTTTTCAATATAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
426971 GATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
427036 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
427101 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
427166 GAGAATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
427229 ATGGAA
391 ATGGAA
427235 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
427300 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGCTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
427365 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAAT
*
427430 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
195 GGAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
427495 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
260 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
*
427560 AGAGAATATATCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
325 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
427610 CTAATTTAAA
Statistics
Matches: 1927, Mismatches: 16, Indels: 22
0.98 0.01 0.01
Matches are distributed among these distances:
392 190 0.10
393 164 0.09
394 593 0.31
395 224 0.12
396 216 0.11
397 285 0.15
398 255 0.13
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (396 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAAAACATGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
ATGGAA
Done.