Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 55
Found at i:7643320 original size:41 final size:41
Alignment explanation
Indices: 7643274--7643446 Score: 224
Period size: 41 Copynumber: 4.2 Consensus size: 41
7643264 AGAGAAAATT
*
7643274 ATCGCAACGACACTGTACACTATCGCAACGCGAAATGGATA
1 ATCGCAACGACACTGTACACTATCGCAACGCGAAATGGAAA
* *
7643315 ATCGCAACG-CGA-TTTTCAACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGAC-ACTGTAC-ACTATCGCAACGCGAAATGGAAA
* *
7643356 ATCGCAACGACACTATAGACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGACACTGTACACTATCGCAACGCGAAATGGAAA
* * * *
7643397 ATCGCATCGACACTGTAGATTATCGCAACGCGAAAAGGAAA
1 ATCGCAACGACACTGTACACTATCGCAACGCGAAATGGAAA
*
7643438 ATCGTAACG
1 ATCGCAACG
7643447 CGAAATAGAA
Statistics
Matches: 116, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
40 4 0.03
41 109 0.94
42 3 0.03
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.17
Consensus pattern (41 bp):
ATCGCAACGACACTGTACACTATCGCAACGCGAAATGGAAA
Found at i:7650672 original size:28 final size:28
Alignment explanation
Indices: 7650636--7650693 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
7650626 CTTGGTTGAT
*
7650636 GCAAATTTTACATACTTGCCGAATATAG
1 GCAAATTTTACATACTTACCGAATATAG
* * *
7650664 GCAAGTTTTACATCCTTATCGAATATAG
1 GCAAATTTTACATACTTACCGAATATAG
7650692 GC
1 GC
7650694 CCGAGTCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (28 bp):
GCAAATTTTACATACTTACCGAATATAG
Found at i:7651817 original size:49 final size:49
Alignment explanation
Indices: 7651754--7651851 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
7651744 TTCAGCTTGC
7651754 ACTTGCTCACATATTGCAGGTACATGTGAATGCTATTCTTTTTCAATTT
1 ACTTGCTCACATATTGCAGGTACATGTGAATGCTATTCTTTTTCAATTT
7651803 ACTTGCTCACATATTGCAGGTACATGTGAATGCTATTCTTTTTCAATTT
1 ACTTGCTCACATATTGCAGGTACATGTGAATGCTATTCTTTTTCAATTT
7651852 TAATATCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.43
Consensus pattern (49 bp):
ACTTGCTCACATATTGCAGGTACATGTGAATGCTATTCTTTTTCAATTT
Found at i:7655763 original size:36 final size:36
Alignment explanation
Indices: 7655715--7655786 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
7655705 TTACCTTTTG
* *
7655715 TTTCAGATGCAACATGATCCGAATCTGGTTCTTGGC
1 TTTCAGAGGCAACAGGATCCGAATCTGGTTCTTGGC
*
7655751 TTTCAGAGGCAACAGGATCCGAATTTGGTTCTTGGC
1 TTTCAGAGGCAACAGGATCCGAATCTGGTTCTTGGC
7655787 GAATGCTAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (36 bp):
TTTCAGAGGCAACAGGATCCGAATCTGGTTCTTGGC
Found at i:7657574 original size:14 final size:14
Alignment explanation
Indices: 7657555--7657582 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7657545 AGAGGGAATA
7657555 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
7657569 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
7657583 AAGTCTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (14 bp):
TGTAGAAAACAGAC
Found at i:7659888 original size:51 final size:51
Alignment explanation
Indices: 7659812--7659912 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
7659802 TAAGGAAAGG
* *
7659812 ATAGGTTGTAAAGAAATATCGGTTTGAACAGGTTGAAATTCCTTGTAACTA
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACTA
7659863 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACT
1 ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACT
7659913 CTCCCCCTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
ATAGGCTGTAAAGAAATATCGGTTTGAACAGGCTGAAATTCCTTGTAACTA
Found at i:7661692 original size:14 final size:14
Alignment explanation
Indices: 7661673--7661700 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7661663 CCTGATACCA
7661673 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
7661687 TGTAGAAAACAGAC
1 TGTAGAAAACAGAC
7661701 AAGTCTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (14 bp):
TGTAGAAAACAGAC
Found at i:7675264 original size:2 final size:2
Alignment explanation
Indices: 7675259--7675285 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7675249 TAACCTTATT
7675259 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7675286 GATTAGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7681918 original size:2 final size:2
Alignment explanation
Indices: 7681911--7681942 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7681901 GATGTATTTA
7681911 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7681943 TAAAAATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7682152 original size:23 final size:23
Alignment explanation
Indices: 7682126--7682173 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7682116 ATAAAGTACA
*
7682126 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
7682149 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7682172 AT
1 AT
7682174 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7682580 original size:21 final size:22
Alignment explanation
Indices: 7682555--7682606 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
7682545 ACACTTTACA
*
7682555 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
7682578 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
7682601 ATATAA
1 ATATAA
7682607 GGGTTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:7682591 original size:23 final size:23
Alignment explanation
Indices: 7682565--7682627 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7682555 ATATAACCAC
7682565 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
7682588 TACCTATTACATTATATAAGGGT
1 TACCTATTACATTATATAAACGA
*
7682611 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7682628 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7682948 original size:431 final size:431
Alignment explanation
Indices: 7682285--7683157 Score: 1665
Period size: 431 Copynumber: 2.0 Consensus size: 431
7682275 GGATTGATAC
7682285 TTTAACAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
7682350 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATC
66 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATC
7682415 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
7682480 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
7682545 ACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
* *
7682610 TTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGATC
326 GTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
7682675 GATACTTTTTTTAAAACTTATGTAATTCATGTTTCAATTTT
391 GATACTTTTTTTAAAACTTATGTAATTCATGTTTCAATTTT
* *
7682716 TTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCACAAAAAATT
1 TTTAACAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
* *
7682781 ATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTTAATTTAATAATAATATATATC
66 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATC
*
7682846 GTAACGTAAGAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
131 GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
*
7682911 AGGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
196 AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
7682976 ACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
261 ACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
7683041 GTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
326 GTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
*
7683106 GATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTT
391 GATACTTTTTTTAAAACTTATGTAATTCATGTTTCAATTTT
7683147 TTTAACAGTGT
1 TTTAACAGTGT
7683158 ACTGCGAATT
Statistics
Matches: 433, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
431 433 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (431 bp):
TTTAACAGTGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTAATAATAATATATATC
GTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAA
AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
ACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGGG
GTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATC
GATACTTTTTTTAAAACTTATGTAATTCATGTTTCAATTTT
Found at i:7683011 original size:21 final size:22
Alignment explanation
Indices: 7682986--7683037 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
7682976 ACACTTTACA
*
7682986 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
7683009 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
7683032 ATATAA
1 ATATAA
7683038 GGGGTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:7683022 original size:23 final size:23
Alignment explanation
Indices: 7682996--7683058 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7682986 ATATAACCAC
7682996 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
7683019 TACCTATTACATTATATAAGGGG
1 TACCTATTACATTATATAAACGA
*
7683042 TACCTATTACATCATAT
1 TACCTATTACATTATAT
7683059 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:7686218 original size:22 final size:23
Alignment explanation
Indices: 7686187--7686229 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7686177 TTCCACAGTG
7686187 AAAAAAGTATCGACAC-TTTTAT
1 AAAAAAGTATCGACACATTTTAT
*
7686209 AAAAAGGTATCGACACATTTT
1 AAAAAAGTATCGACACATTTT
7686230 TATACCGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (23 bp):
AAAAAAGTATCGACACATTTTAT
Found at i:7686533 original size:183 final size:183
Alignment explanation
Indices: 7686225--7686919 Score: 1241
Period size: 183 Copynumber: 3.8 Consensus size: 183
7686215 GTATCGACAC
7686225 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
7686290 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
7686355 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
131 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
7686408 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
7686473 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
7686538 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
131 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
*
7686591 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATATGGGTTCCGATGTGTAAA
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
*
7686656 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
*
7686721 AATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGT
131 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
* * *
7686774 ATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTAGGTTCCGATGTTTTTT
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATG---TGT
* * * * *
7686839 CAA--TCGACACTTTTTTAAATGGTATCGACACATTTTTCTTTCATTCTGGACATAAAGTACAGA
63 AAATGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGA
*
7686902 CACAATATTAAAAAGTGT
128 CACAATATTAGAAAGTGT
7686920 GAAAACTTTG
Statistics
Matches: 497, Mismatches: 12, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
183 419 0.84
184 74 0.15
186 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
Found at i:7688127 original size:3 final size:3
Alignment explanation
Indices: 7688119--7688190 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
7688109 ACTTGTTTGG
* * * **
7688119 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
7688167 AGC TTC ATC GTC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC
7688191 TGTTAAAAGA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.25, C:0.35, G:0.06, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:7690536 original size:198 final size:198
Alignment explanation
Indices: 7689623--7691038 Score: 2769
Period size: 198 Copynumber: 7.1 Consensus size: 198
7689613 TATTTAAATT
7689623 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
*
7689688 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTGGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7689753 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTG-TTTCCATTCATTCTGGGA
7689818 AAAA
195 AAAA
*
7689822 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACTGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
*
7689887 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTGGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7689952 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTG-TTTCCATTCATTCTGGGA
7690017 AAAA
195 AAAA
7690021 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
7690086 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7690151 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTG-TTTCCATTCATTCTGGGA
7690216 AAAA
195 AAAA
7690220 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
7690285 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7690350 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
7690415 AAA
196 AAA
7690418 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
7690483 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7690548 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
7690613 AAA
196 AAA
*
7690616 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTG
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
7690681 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7690746 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
7690811 AAA
196 AAA
7690814 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
7690879 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
7690944 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
131 ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
7691009 AAA
196 AAA
7691012 AGTATCGACACAAACTATATTAGTGTC
1 AGTATCGACACAAACTATATTAGTGTC
7691039 ACCATCTTAA
Statistics
Matches: 1212, Mismatches: 5, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
198 641 0.53
199 571 0.47
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (198 bp):
AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
ATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAA
AAA
Found at i:7691088 original size:33 final size:33
Alignment explanation
Indices: 7691051--7691116 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7691041 CATCTTAATA
*
7691051 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
7691084 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
7691117 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:7691190 original size:21 final size:21
Alignment explanation
Indices: 7691150--7691214 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7691140 CCCCTTATTC
* *
7691150 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
7691171 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
7691192 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
7691213 CT
1 CT
7691215 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:7693504 original size:20 final size:19
Alignment explanation
Indices: 7693448--7693495 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 19
7693438 ATCCGGTATC
7693448 ATTTTACCGGTTTTATCAT
1 ATTTTACCGGTTTTATCAT
*
7693467 TTTGTTACCGGTTTTATCAT
1 ATT-TTACCGGTTTTATCAT
7693487 AATTTTACC
1 -ATTTTACC
7693496 TGTTATATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.21, C:0.17, G:0.10, T:0.52
Consensus pattern (19 bp):
ATTTTACCGGTTTTATCAT
Found at i:7693643 original size:20 final size:20
Alignment explanation
Indices: 7693617--7693662 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
7693607 CACTTTTAAA
7693617 TTTACCGGTTTTATCAT-TT
1 TTTACCGGTTTTATCATATT
7693636 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCATATT
7693657 TTTACC
1 TTTACC
7693663 TGGTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTACCGGTTTTATCATATT
Found at i:7698295 original size:16 final size:17
Alignment explanation
Indices: 7698274--7698306 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7698264 TTACTATTCA
7698274 CGTGAATAGT-AAATTT
1 CGTGAATAGTGAAATTT
7698290 CGTGAATAGTGAAATTT
1 CGTGAATAGTGAAATTT
7698307 TGTCGGCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.36
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Found at i:7705348 original size:14 final size:14
Alignment explanation
Indices: 7705329--7705380 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
7705319 TGTTTTAAAT
7705329 TTAAAATATAAAAA
1 TTAAAATATAAAAA
* * *
7705343 TTAAAAAATCAATA
1 TTAAAATATAAAAA
*
7705357 -TAAAATAAAAAAA
1 TTAAAATATAAAAA
7705370 TTAAAAT-TAAA
1 TTAAAATATAAA
7705381 TTACTAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
TTAAAATATAAAAA
Found at i:7705367 original size:19 final size:20
Alignment explanation
Indices: 7705333--7705370 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7705323 TTAAATTTAA
*
7705333 AATATAAAAATTAAAAAATC
1 AATATAAAAATAAAAAAATC
7705353 AATAT-AAAATAAAAAAAT
1 AATATAAAAATAAAAAAAT
7705371 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
AATATAAAAATAAAAAAATC
Found at i:7705381 original size:19 final size:19
Alignment explanation
Indices: 7705339--7705381 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7705329 TTAAAATATA
* *
7705339 AAAATTAAAAAATCAATAT
1 AAAATAAAAAAATCAAAAT
*
7705358 AAAATAAAAAAATTAAAAT
1 AAAATAAAAAAATCAAAAT
*
7705377 TAAAT
1 AAAAT
7705382 TACTAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATAAAAAAATCAAAAT
Found at i:7708222 original size:21 final size:21
Alignment explanation
Indices: 7708198--7708245 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7708188 TATATACTTC
*
7708198 TACATTCATATATGATACACA
1 TACATACATATATGATACACA
**
7708219 TACATACATATATGATATGCA
1 TACATACATATATGATACACA
7708240 TACATA
1 TACATA
7708246 TGGATATGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (21 bp):
TACATACATATATGATACACA
Found at i:7708253 original size:16 final size:17
Alignment explanation
Indices: 7708221--7708257 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7708211 GATACACATA
*
7708221 CATACATATATGATATG
1 CATACATATAGGATATG
7708238 CATACATAT-GGATATG
1 CATACATATAGGATATG
7708254 CATA
1 CATA
7708258 ATTAGGGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (17 bp):
CATACATATAGGATATG
Found at i:7710754 original size:18 final size:19
Alignment explanation
Indices: 7710731--7710766 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7710721 TTTTTTTAAA
7710731 TGAATTTATT-AAAAAAAC
1 TGAATTTATTCAAAAAAAC
*
7710749 TGAATTTTTTCAAAAAAA
1 TGAATTTATTCAAAAAAA
7710767 AAAATGAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (19 bp):
TGAATTTATTCAAAAAAAC
Found at i:7711721 original size:2 final size:2
Alignment explanation
Indices: 7711714--7711745 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7711704 ACTTGTATTC
7711714 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7711746 TGGATAGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7715131 original size:5 final size:5
Alignment explanation
Indices: 7715121--7715163 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
7715111 TTTCAAAGCC
7715121 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
7715164 CAATTAATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:7717861 original size:2 final size:2
Alignment explanation
Indices: 7717854--7717888 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7717844 AAAACGAAGC
*
7717854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7717889 AGCAGGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7719408 original size:3 final size:3
Alignment explanation
Indices: 7719400--7719457 Score: 82
Period size: 3 Copynumber: 19.3 Consensus size: 3
7719390 GACTTGAAAT
*
7719400 ATA ATA ATA ATA ATA ATA ATA ATA TATA ATA ATA ATA ATA AT- TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
*
7719445 TTA ATA ATA ATA A
1 ATA ATA ATA ATA A
7719458 AAGCAAAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 1 0.02
3 47 0.92
4 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:7719429 original size:25 final size:24
Alignment explanation
Indices: 7719398--7719457 Score: 86
Period size: 25 Copynumber: 2.5 Consensus size: 24
7719388 GGGACTTGAA
7719398 ATATAATAATAATAATAATAATAAT
1 ATATAATAATAATAATAAT-ATAAT
* *
7719423 ATATAATAATAATAATAATTTATT
1 ATATAATAATAATAATAATATAAT
7719447 A-ATAATAATAA
1 ATATAATAATAA
7719458 AAGCAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 10 0.30
24 4 0.12
25 19 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATAATAATAATAATAATATAAT
Found at i:7719536 original size:27 final size:24
Alignment explanation
Indices: 7719506--7719556 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 24
7719496 ATTCATCCAT
*
7719506 AAAATATATAAATTTATACAAAAAATA
1 AAAATATAGAAA--TATA-AAAAAATA
7719533 AAAATATAGAAATATAAAAAAATA
1 AAAATATAGAAATATAAAAAAATA
7719557 TTTTTATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 4 0.17
27 11 0.48
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (24 bp):
AAAATATAGAAATATAAAAAAATA
Found at i:7723938 original size:3 final size:3
Alignment explanation
Indices: 7723930--7723958 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7723920 AGTGAGGCAA
7723930 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7723959 GGAATTGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7724234 original size:23 final size:23
Alignment explanation
Indices: 7724192--7724236 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7724182 CGAATTTCCA
*
7724192 CGTAGAATTACATCGAAGTGCTG
1 CGTAGAATTACACCGAAGTGCTG
* *
7724215 CGTAGAATTGCACCGTAGTGCT
1 CGTAGAATTACACCGAAGTGCT
7724237 ATATAAGATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (23 bp):
CGTAGAATTACACCGAAGTGCTG
Found at i:7731109 original size:23 final size:23
Alignment explanation
Indices: 7731079--7731129 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7731069 CGTATAAATG
7731079 CACCGAAGCGCCACATAGAATTA
1 CACCGAAGCGCCACATAGAATTA
* * * *
7731102 CACCGAAGTGCCGCGTAGAATTG
1 CACCGAAGCGCCACATAGAATTA
7731125 CACCG
1 CACCG
7731130 TAGTGCTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (23 bp):
CACCGAAGCGCCACATAGAATTA
Found at i:7733309 original size:14 final size:14
Alignment explanation
Indices: 7733290--7733328 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7733280 AATCCTAATT
*
7733290 ATCCCTACATTTCA
1 ATCCCTACACTTCA
7733304 ATCCCTACACTTCA
1 ATCCCTACACTTCA
*
7733318 ATGCCTA-ACTT
1 ATCCCTACACTT
7733329 TAAAATATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.28, C:0.36, G:0.03, T:0.33
Consensus pattern (14 bp):
ATCCCTACACTTCA
Found at i:7736704 original size:18 final size:18
Alignment explanation
Indices: 7736640--7736706 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
7736630 TACTTTTCCT
*
7736640 GAAGGACCACTATATCCC
1 GAAGGACCACTATGTCCC
* *
7736658 AAAGGACCACTGATTGTTCC
1 GAAGGACCACT-A-TGTCCC
**
7736678 GAAAAACCACTATGTCCC
1 GAAGGACCACTATGTCCC
7736696 GAAGGACCACT
1 GAAGGACCACT
7736707 GAAAATCCCT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
18 24 0.63
19 2 0.05
20 12 0.32
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (18 bp):
GAAGGACCACTATGTCCC
Found at i:7737265 original size:20 final size:20
Alignment explanation
Indices: 7737240--7737288 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7737230 GAAGGTATGC
7737240 ATCGATGCACTACATCATGT
1 ATCGATGCACTACATCATGT
* *
7737260 ATCGATGGACTACATCGTGT
1 ATCGATGCACTACATCATGT
7737280 ATCGATGCA
1 ATCGATGCA
7737289 TCCCTTAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (20 bp):
ATCGATGCACTACATCATGT
Found at i:7743599 original size:18 final size:18
Alignment explanation
Indices: 7743538--7743599 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
7743528 TTGTCCTGAT
*
7743538 GGACCACTATATCCCGAA
1 GGACCACTATGTCCCGAA
***
7743556 GGACCACTTATTGTTATGAA
1 GGACCAC-TA-TGTCCCGAA
*
7743576 GAACCACTATGTCCCGAA
1 GGACCACTATGTCCCGAA
7743594 GGACCA
1 GGACCA
7743600 TTGAAAATCT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
18 18 0.55
19 4 0.12
20 11 0.33
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (18 bp):
GGACCACTATGTCCCGAA
Found at i:7744262 original size:63 final size:64
Alignment explanation
Indices: 7744173--7744311 Score: 149
Period size: 63 Copynumber: 2.2 Consensus size: 64
7744163 ATCCCTTAAC
* * * *
7744173 GGGTGCATTGATGCACCAACTATGCATCGGTACA-TAAATCTCATTCGATGTTTGTATTTT-AGG
1 GGGTGCATCGATGCACCAACTATGCATCGATACACT-AATCACATTCGATGTTTGTATTTTAAAG
* * * * *
7744236 GGGTGCATCGATGCACC-TCTTGTGCATCGATACACTGATGACATTCGATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACCAAC-TATGCATCGATACACTAATCACATTCGATGTTTGTATTTTAAAG
*
7744300 GAGTGCATCGAT
1 GGGTGCATCGAT
7744312 ACACTTCATG
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
62 1 0.02
63 48 0.76
64 14 0.22
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (64 bp):
GGGTGCATCGATGCACCAACTATGCATCGATACACTAATCACATTCGATGTTTGTATTTTAAAG
Found at i:7747942 original size:18 final size:18
Alignment explanation
Indices: 7747919--7747989 Score: 115
Period size: 18 Copynumber: 3.9 Consensus size: 18
7747909 ACTGAATATT
*
7747919 TGTCCCGAAGGACTACTA
1 TGTCCCGAAGGACCACTA
7747937 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
7747955 TGTCCCGAAGAACCACTA
1 TGTCCCGAAGGACCACTA
*
7747973 TGTCCTGAAGGACCACT
1 TGTCCCGAAGGACCACT
7747990 GATAATCCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:7751354 original size:2 final size:2
Alignment explanation
Indices: 7751347--7751392 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
7751337 ACATGAACCC
7751347 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7751389 TA TA
1 TA TA
7751393 AGGTAATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7762801 original size:22 final size:22
Alignment explanation
Indices: 7762776--7762822 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
7762766 ACGTGAGAAT
*
7762776 CACGGGTTCTGCAAGGAGAGAG
1 CACGGGTTCTGCAAGGAGAAAG
7762798 CACGGGTTCTGCAAGGAGAAAG
1 CACGGGTTCTGCAAGGAGAAAG
7762820 CAC
1 CAC
7762823 AGAAATCACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.36, T:0.13
Consensus pattern (22 bp):
CACGGGTTCTGCAAGGAGAAAG
Found at i:7762878 original size:23 final size:23
Alignment explanation
Indices: 7762852--7762895 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7762842 TCCTGCAAGG
7762852 CTGCACGTCTGCATGTGGGGGTC
1 CTGCACGTCTGCATGTGGGGGTC
7762875 CTGCACGTCTGCATGTGGGGG
1 CTGCACGTCTGCATGTGGGGG
7762896 GCATGCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.09, C:0.25, G:0.41, T:0.25
Consensus pattern (23 bp):
CTGCACGTCTGCATGTGGGGGTC
Found at i:7762902 original size:23 final size:23
Alignment explanation
Indices: 7762853--7762902 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
7762843 CCTGCAAGGC
* *
7762853 TGCACGTCTGCATGTGGGGGTCC
1 TGCACGTCTGCATGTGGGGGGCA
7762876 TGCACGTCTGCATGTGGGGGGCA
1 TGCACGTCTGCATGTGGGGGGCA
7762899 TGCA
1 TGCA
7762903 ACTGTTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.40, T:0.24
Consensus pattern (23 bp):
TGCACGTCTGCATGTGGGGGGCA
Found at i:7763644 original size:172 final size:173
Alignment explanation
Indices: 7763357--7763715 Score: 569
Period size: 172 Copynumber: 2.1 Consensus size: 173
7763347 TTGTAAAGTT
* * * * *
7763357 TTAGGGACCGTTTTGTAAAATTTAAGGAATTTAAGGAATAAGAGTAAATTATTAAAAGTTGCTAT
1 TTAGGGATCATTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
*
7763422 ACTATGCTGGAATTTAGTATTAGTATGCTTAATTGGTTAAATTAGAAAGAATTTA-AAATTTA-T
66 ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
*
7763485 GGATTAAATTGCTAACTTTGAAAATGTTGAGAACCAAATAGTAA
131 -GATTAAATTGCAAACTTTGAAAATGTTGAGAACCAAATAGTAA
* * *
7763529 TTAGGGATCATTTTGCAAAATTTGAGGAATTTAAGAAATTAGAGTAAATTATAAAAAGTTGGTAT
1 TTAGGGATCATTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
* *
7763594 ACTATGCTTGAATTTAGTATTAATATGCTTAATTGGTTAAATTTGAAAGAATTTATAAATTTAGT
66 ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
* *
7763659 GATTAAATTGCAAAGTTTGAAAATGTTGAGAAGCAAATAGTAA
131 GATTAAATTGCAAACTTTGAAAATGTTGAGAACCAAATAGTAA
7763702 TTAGGGATCATTTT
1 TTAGGGATCATTTT
7763716 ATATTTGATG
Statistics
Matches: 171, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
172 109 0.64
173 61 0.36
174 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (173 bp):
TTAGGGATCATTTTGCAAAATTTAAGGAATTTAAGAAATAAGAGTAAATTATAAAAAGTTGCTAT
ACTATGCTGGAATTTAGTATTAATATGCTTAATTGGTTAAATTAGAAAGAATTTATAAATTTAGT
GATTAAATTGCAAACTTTGAAAATGTTGAGAACCAAATAGTAA
Found at i:7765466 original size:6 final size:6
Alignment explanation
Indices: 7765455--7765479 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7765445 CAAGAAGGAC
7765455 TGGGAG TGGGAG TGGGAG TGGGAG T
1 TGGGAG TGGGAG TGGGAG TGGGAG T
7765480 TCTTCTCACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.64, T:0.20
Consensus pattern (6 bp):
TGGGAG
Found at i:7765962 original size:14 final size:14
Alignment explanation
Indices: 7765940--7766453 Score: 114
Period size: 14 Copynumber: 36.5 Consensus size: 14
7765930 CTATTATTAT
*
7765940 ATCAGTAAATATAA
1 ATCATTAAATATAA
*
7765954 ATCATTAAAGT-CAA
1 ATCATTAAA-TATAA
* *
7765968 ATAATT-ATTATTAA
1 ATCATTAAATA-TAA
7765982 ATCATTAAA-ATTAA
1 ATCATTAAATA-TAA
7765996 ATCATTAAA-ATTAA
1 ATCATTAAATA-TAA
* * *
7766010 GTAATT-ATTATTAA
1 ATCATTAAATA-TAA
*
7766024 ATTATTAAA-ATTAA
1 ATCATTAAATA-TAA
*
7766038 ATCATTAAAGTA-ATT
1 ATCATTAAA-TATA-A
*
7766053 ATTATTAAATCATTAA
1 ATCATTAAAT-A-TAA
7766069 ATCATTAAATCATTAA
1 ATCATTAAAT-A-TAA
* *
7766085 AGTGATT-ATTATTAA
1 A-TCATTAAATA-TAA
*
7766100 AGCATTAAAGT-TAA
1 ATCATTAAA-TATAA
*
7766114 ATCATTAAAGTA-ATT
1 ATCATTAAA-TATA-A
*
7766129 ATTATTAAATCATTAA
1 ATCATTAAAT-A-TAA
7766145 ATCATTAAATCATTAA
1 ATCATTAAAT-A-TAA
*
7766161 ATCATTAAA-ATATT
1 ATCATTAAATATA-A
*
7766175 ATTA-TAAATCATTAA
1 ATCATTAAAT-A-TAA
7766190 ATCATTAAATCATGAA
1 ATCATTAAAT-AT-AA
* *
7766206 AGTAATT-ATTATTAA
1 A-TCATTAAATA-TAA
7766221 ATCATTAAAGT-TAA
1 ATCATTAAA-TATAA
*
7766235 ATCATTAAA-GT-A
1 ATCATTAAATATAA
*
7766247 ATTATT--AT-TAA
1 ATCATTAAATATAA
7766258 ATCATTAAAGT-TAA
1 ATCATTAAA-TATAA
7766272 ATCATTAAATCATTAA
1 ATCATTAAAT-A-TAA
7766288 A--ATTAAATCATTAA
1 ATCATTAAAT-A-TAA
* *
7766302 AGTAATT-ATTATTAA
1 A-TCATTAAATA-TAA
7766317 ATCATTAAA-ATTAA
1 ATCATTAAATA-TAA
7766331 ATCATTAAA-AT-A
1 ATCATTAAATATAA
*
7766343 ATTATT--AT-TAA
1 ATCATTAAATATAA
7766354 ATCATTAAAGT-TAA
1 ATCATTAAA-TATAA
*
7766368 ATCATTAAA-GT-A
1 ATCATTAAATATAA
*
7766380 ATTATT--AT-TAA
1 ATCATTAAATATAA
7766391 ATCATTAAAGT-TAA
1 ATCATTAAA-TATAA
* *
7766405 ATAATT-ATTATTAA
1 ATCATTAAATA-TAA
7766419 ATCATTAAAGT-TAA
1 ATCATTAAA-TATAA
* *
7766433 ATAATTAAATTTAA
1 ATCATTAAATATAA
*
7766447 ATAATTA
1 ATCATTA
7766454 TTATTAAATA
Statistics
Matches: 391, Mismatches: 50, Indels: 118
0.70 0.09 0.21
Matches are distributed among these distances:
10 6 0.02
11 18 0.05
12 20 0.05
13 17 0.04
14 204 0.52
15 46 0.12
16 67 0.17
17 13 0.03
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.40
Consensus pattern (14 bp):
ATCATTAAATATAA
Found at i:7765980 original size:42 final size:40
Alignment explanation
Indices: 7765931--7766462 Score: 385
Period size: 37 Copynumber: 13.3 Consensus size: 40
7765921 ATATATTTAC
* *
7765931 TATTATTATATCAGT-AAATATAAATCATTAAAGTCAAATAAT
1 TATTATTAAATCATTAAAAT-TAAATCATTAAAGT--AATAAT
*
7765973 TATTATTAAATCATTAAAATTAAATCATTAAAATTAAGTAAT
1 TATTATTAAATCATTAAAATTAAATCATT-AAAGTAA-TAAT
*
7766015 TATTATTAAATTATTAAAATTAAATCATTAAAG---TAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTAATAAT
*
7766052 TATTATTAAATCATTAAATCATTAAATCATTAAAG---TGAT
1 TATTATTAAATCATTAAA--ATTAAATCATTAAAGTAATAAT
* *
7766091 TATTATTAAAGCATTAAAGTTAAATCATTAAAG---TAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTAATAAT
* *
7766128 TATTATTAAATCATTAAATCATTAAATCATTAAA-TCATTAAAA
1 TATTATTAAATCATTAAA--ATTAAATCATTAAAGT-AAT-AAT
*
7766171 TATTATTATAAATCATTAAATCATTAAATCATGAAAG---TAAT
1 TATTA-T-TAAATCATTAAA--ATTAAATCATTAAAGTAATAAT
*
7766212 TATTATTAAATCATTAAAGTTAAATCATTAAAG---TAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTAATAAT
* *
7766249 TATTATTAAATCATTAAAGTTAAATCATTAAA-TCATTAAAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAAGT-A--ATAAT
* * ** * *
7766291 TAAATCATTAAAGTAATTATTATTAAATCATTAAAATTA-AAT
1 T--ATTATTAAA-TCATTAAAATTAAATCATTAAAGTAATAAT
* * **
7766333 CATTA--AAATAATTATTATTAAATCATTAAAGT--TAA-
1 TATTATTAAATCATTAAAATTAAATCATTAAAGTAATAAT
* * **
7766368 -ATCATTAAAGTAATTATTATTAAATCATTAAAGTTAAATAAT
1 TATTATTAAA-TCATTAAAATTAAATCATTAAAG-T-AATAAT
* * *
7766410 TATTATTAAATCATTAAAGTTAAATAATTAAATTTAAATAAT
1 TATTATTAAATCATTAAAATTAAATCATTAAA-GT-AATAAT
7766452 TATTATTAAAT
1 TATTATTAAAT
7766463 ATGTACTCGA
Statistics
Matches: 419, Mismatches: 35, Indels: 72
0.80 0.07 0.14
Matches are distributed among these distances:
34 3 0.01
36 5 0.01
37 150 0.36
38 4 0.01
39 60 0.14
40 4 0.01
41 15 0.04
42 99 0.24
43 24 0.06
44 9 0.02
45 45 0.11
46 1 0.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (40 bp):
TATTATTAAATCATTAAAATTAAATCATTAAAGTAATAAT
Found at i:7766038 original size:76 final size:73
Alignment explanation
Indices: 7765991--7766406 Score: 357
Period size: 76 Copynumber: 5.7 Consensus size: 73
7765981 AATCATTAAA
*
7765991 ATTAAATCATTAAA--ATT-AAGTAATTATTATTAAATTATTAAAATTAAATCATTAAAGTAATT
1 ATTAAA-CATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAATC--TAAAGTAATT
7766053 ATTATTAAATC
63 ATTATTAAATC
* * *
7766064 ATTAAATCATTAAATCATTAAAGTGATTATTATTAAAGCATTAAAGTTAAATCATTAAAGTAATT
1 ATTAAA-CATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAATC--TAAAGTAATT
7766129 ATTATTAAATC
63 ATTATTAAATC
* *
7766140 ATTAAATCATTAAATCATTAAATCATTAAAATATTATTATAAATCATTAAATCATTAAATCATGA
1 ATTAAA-CATTAAATCATT-AA--AGT-AATTATTA-T-TAAATCATTAAA--ATTAAATC-T-A
7766205 AAGTAATTATTATTAAATC
55 AAGTAATTATTATTAAATC
* * *
7766224 ATTAAA-GTTAAATCATTAAAGTAATTATTATTAAATCATTAAAGTTAAATCATTAAA-TCATTA
1 ATTAAACATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAATC--TAAAGTAATTA
**
7766287 AAATTAAATC
64 TTATTAAATC
* * * * * *
7766297 ATT-AA-AGT-AATTATT--ATTAA--ATCATTAAA--ATT-AAA-T-CAT-TAAAATAATTATT
1 ATTAAACATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAATCTAAAGTAATTATT
7766349 ATTAAATC
66 ATTAAATC
* *
7766357 ATTAAA-GTTAAATCATTAAAGTAATTATTATTAAATCATTAAAGTTAAAT
1 ATTAAACATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAAT
7766407 AATTATTATT
Statistics
Matches: 283, Mismatches: 35, Indels: 52
0.76 0.09 0.14
Matches are distributed among these distances:
59 4 0.01
60 16 0.06
61 3 0.01
62 8 0.03
63 1 0.00
64 6 0.02
65 3 0.01
66 8 0.03
67 8 0.03
68 3 0.01
69 6 0.02
70 1 0.00
71 8 0.03
72 3 0.01
73 30 0.11
74 10 0.04
75 4 0.01
76 83 0.29
77 3 0.01
78 7 0.02
79 4 0.01
80 6 0.02
81 3 0.01
82 21 0.07
83 1 0.00
84 33 0.12
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (73 bp):
ATTAAACATTAAATCATTAAAGTAATTATTATTAAATCATTAAAATTAAATCTAAAGTAATTATT
ATTAAATC
Found at i:7766363 original size:133 final size:133
Alignment explanation
Indices: 7766133--7766427 Score: 472
Period size: 133 Copynumber: 2.2 Consensus size: 133
7766123 GTAATTATTA
7766133 TTAAATCATTAAATCATTAAATCATTAAATCATTAAAATATTATTATAAATCATTAAATCATTAA
1 TTAAATCATTAAATCATTAAA-CATTAAATCATTAAAATATTATTATAAATCATTAAA-CATTAA
*
7766198 ATCATGAAAGTAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCAT
64 ATCATGAAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCAT
7766263 TAAAG
129 TAAAG
*
7766268 TTAAATCATTAAATCATTAAA-ATTAAATCATTAAAGTAATTATTATTAAATCATTAAA-ATTAA
1 TTAAATCATTAAATCATTAAACATTAAATCATTAAAAT-ATTATTA-TAAATCATTAAACATTAA
*
7766331 ATCATTAAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCAT
64 ATCATGAAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCAT
7766396 TAAAG
129 TAAAG
* *
7766401 TTAAATAATT--ATTATTAAATCATTAAA
1 TTAAATCATTAAATCATTAAA-CATTAAA
7766428 GTTAAATAAT
Statistics
Matches: 151, Mismatches: 5, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
131 8 0.05
133 103 0.68
134 7 0.05
135 33 0.22
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (133 bp):
TTAAATCATTAAATCATTAAACATTAAATCATTAAAATATTATTATAAATCATTAAACATTAAAT
CATGAAAATAATTATTATTAAATCATTAAAGTTAAATCATTAAAGTAATTATTATTAAATCATTA
AAG
Found at i:7766442 original size:8 final size:8
Alignment explanation
Indices: 7765977--7766427 Score: 243
Period size: 8 Copynumber: 60.8 Consensus size: 8
7765967 AATAATTATT
7765977 ATTAAATC
1 ATTAAATC
7765985 ATTAAA--
1 ATTAAATC
7765991 ATTAAATC
1 ATTAAATC
7765999 ATTAAA--
1 ATTAAATC
* *
7766005 ATTAAGTA
1 ATTAAATC
*
7766013 ATT--ATT
1 ATTAAATC
*
7766019 ATTAAATT
1 ATTAAATC
7766027 ATTAAA--
1 ATTAAATC
7766033 ATTAAATC
1 ATTAAATC
*
7766041 ATTAAAGTA
1 ATTAAA-TC
*
7766050 ATT--ATT
1 ATTAAATC
7766056 ATTAAATC
1 ATTAAATC
7766064 ATTAAATC
1 ATTAAATC
7766072 ATTAAATC
1 ATTAAATC
*
7766080 ATTAAAGTG
1 ATTAAA-TC
*
7766089 ATT--ATT
1 ATTAAATC
*
7766095 ATTAAAGC
1 ATTAAATC
7766103 ATTAAA--
1 ATTAAATC
*
7766109 GTTAAATC
1 ATTAAATC
*
7766117 ATTAAAGTA
1 ATTAAA-TC
*
7766126 ATT--ATT
1 ATTAAATC
7766132 ATTAAATC
1 ATTAAATC
7766140 ATTAAATC
1 ATTAAATC
7766148 ATTAAATC
1 ATTAAATC
7766156 ATTAAATC
1 ATTAAATC
7766164 ATTAAAAT-
1 ATT-AAATC
*
7766172 ATT--ATT
1 ATTAAATC
7766178 A-TAAATC
1 ATTAAATC
7766185 ATTAAATC
1 ATTAAATC
7766193 ATTAAATC
1 ATTAAATC
* *
7766201 ATGAAAGTA
1 ATTAAA-TC
*
7766210 ATT--ATT
1 ATTAAATC
7766216 ATTAAATC
1 ATTAAATC
7766224 ATTAAA--
1 ATTAAATC
*
7766230 GTTAAATC
1 ATTAAATC
*
7766238 ATTAAAGTA
1 ATTAAA-TC
*
7766247 ATT--ATT
1 ATTAAATC
7766253 ATTAAATC
1 ATTAAATC
7766261 ATTAAA--
1 ATTAAATC
*
7766267 GTTAAATC
1 ATTAAATC
7766275 ATTAAATC
1 ATTAAATC
7766283 ATTAAA--
1 ATTAAATC
7766289 ATTAAATC
1 ATTAAATC
*
7766297 ATTAAAGTA
1 ATTAAA-TC
*
7766306 ATT--ATT
1 ATTAAATC
7766312 ATTAAATC
1 ATTAAATC
7766320 ATTAAA--
1 ATTAAATC
7766326 ATTAAATC
1 ATTAAATC
*
7766334 ATTAAAATA
1 ATT-AAATC
*
7766343 ATT--ATT
1 ATTAAATC
7766349 ATTAAATC
1 ATTAAATC
7766357 ATTAAA--
1 ATTAAATC
*
7766363 GTTAAATC
1 ATTAAATC
*
7766371 ATTAAAGTA
1 ATTAAA-TC
*
7766380 ATT--ATT
1 ATTAAATC
7766386 ATTAAATC
1 ATTAAATC
7766394 ATTAAA--
1 ATTAAATC
* *
7766400 GTTAAATA
1 ATTAAATC
*
7766408 ATT--ATT
1 ATTAAATC
7766414 ATTAAATC
1 ATTAAATC
7766422 ATTAAA
1 ATTAAA
7766428 GTTAAATAAT
Statistics
Matches: 347, Mismatches: 43, Indels: 106
0.70 0.09 0.21
Matches are distributed among these distances:
5 3 0.01
6 97 0.28
7 10 0.03
8 199 0.57
9 38 0.11
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (8 bp):
ATTAAATC
Found at i:7769827 original size:18 final size:18
Alignment explanation
Indices: 7769804--7769850 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
7769794 AAATTATTAG
7769804 TCTCACGCTTCAGACGAA
1 TCTCACGCTTCAGACGAA
7769822 TCTCACGCTTCAGACGAA
1 TCTCACGCTTCAGACGAA
7769840 TCTCACGCTTC
1 TCTCACGCTTC
7769851 GGCCACAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.23, C:0.36, G:0.15, T:0.26
Consensus pattern (18 bp):
TCTCACGCTTCAGACGAA
Found at i:7771241 original size:23 final size:23
Alignment explanation
Indices: 7771192--7771269 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
7771182 ATATTATAAT
* * * *
7771192 TTTAATTATTAAATGTTGTTTACA
1 TTTAATTAATAATTATT-TTTATA
7771216 TTTAATTAATAATTATTTTTATA
1 TTTAATTAATAATTATTTTTATA
* * * *
7771239 TTTTATTAACAATCATTTTTATG
1 TTTAATTAATAATTATTTTTATA
7771262 TTTAATTA
1 TTTAATTA
7771270 TTTAAAAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 31 0.69
24 14 0.31
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTAATTAATAATTATTTTTATA
Found at i:7771404 original size:21 final size:21
Alignment explanation
Indices: 7771380--7771419 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7771370 AAATTAAATG
*
7771380 AAAATATAATTAAATATTTTT
1 AAAAAATAATTAAATATTTTT
7771401 AAAAAATAATTAAATATTT
1 AAAAAATAATTAAATATTT
7771420 AATATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAAAATAATTAAATATTTTT
Found at i:7771454 original size:18 final size:18
Alignment explanation
Indices: 7771416--7771451 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
7771406 ATAATTAAAT
7771416 ATTTAATATTAAATTATA
1 ATTTAATATTAAATTATA
7771434 ATTTAATA-TAAATTATA
1 ATTTAATATTAAATTATA
7771451 A
1 A
7771452 ATTAGGTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTTAATATTAAATTATA
Found at i:7773406 original size:22 final size:22
Alignment explanation
Indices: 7773375--7773426 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
7773365 GCAGGAGTGT
*
7773375 TTGAGCGTTTATTGTCAAATGG
1 TTGAGAGTTTATTGTCAAATGG
7773397 TTGAGAGTTTATTGTCAAATGG
1 TTGAGAGTTTATTGTCAAATGG
7773419 TTGAGAGT
1 TTGAGAGT
7773427 CTTTCTAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.06, G:0.29, T:0.40
Consensus pattern (22 bp):
TTGAGAGTTTATTGTCAAATGG
Found at i:7775782 original size:29 final size:29
Alignment explanation
Indices: 7775728--7775785 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
7775718 AATTTTATTA
* *
7775728 ATAAAAATATTATTTTTAATTTAAAAAAT
1 ATAAAAAAATTATTTTTAATTAAAAAAAT
* *
7775757 ATAAAAAAATTATTTATTTATAAAAAAAA
1 ATAAAAAAATTATTT-TTAATTAAAAAAA
7775786 CCCAACTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
ATAAAAAAATTATTTTTAATTAAAAAAAT
Found at i:7775986 original size:15 final size:15
Alignment explanation
Indices: 7775952--7775991 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7775942 TACCGTCCCA
* *
7775952 AAATTCCTAA-ATCT
1 AAATCCCTAATATCC
7775966 AAATCCCTAATATCC
1 AAATCCCTAATATCC
7775981 AAATCCCTAAT
1 AAATCCCTAAT
7775992 TCTCAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATCCCTAATATCC
Found at i:7780408 original size:42 final size:42
Alignment explanation
Indices: 7780357--7780622 Score: 460
Period size: 42 Copynumber: 6.3 Consensus size: 42
7780347 CATATTCGCA
7780357 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
*
7780399 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
* *
7780441 TTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
*
7780483 TTGCGATAGTCCAAGTTCGCATTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
* * * *
7780525 TTGCGATAGTCGAAGTTCGCATTGCGATTTATTCTAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
7780567 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
7780609 TTGCGATAGTCCAA
1 TTGCGATAGTCCAA
7780623 AATCGCAACG
Statistics
Matches: 211, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 211 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
Found at i:7780719 original size:6 final size:6
Alignment explanation
Indices: 7780708--7780739 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7780698 GACAAGTATT
7780708 ACCACG ACCACG ACCACG ACCACG A-CACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
7780740 CGAGACGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.34, C:0.50, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:7781431 original size:62 final size:64
Alignment explanation
Indices: 7781322--7781463 Score: 195
Period size: 62 Copynumber: 2.3 Consensus size: 64
7781312 CGTTTCGATT
* *
7781322 TTGGACTATCGCAAT--AAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCAAATATGG-ATAAATCGCAACGCGAACGTCGACTATCGCAATGCGAAC
*
7781385 TTGGACTATCGCAATGCAAATAT-G-TAAATCGCAATGCGATA-GTCGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCAAATATGGATAAATCGCAACGCGA-ACGTCGACTATCGCAATGCGAAC
*
7781447 TTCGACTATCGCAATGC
1 TTGGACTATCGCAATGC
7781464 GAACTTCGAC
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
62 50 0.69
63 16 0.22
64 1 0.01
65 5 0.07
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (64 bp):
TTGGACTATCGCAATGCAAATATGGATAAATCGCAACGCGAACGTCGACTATCGCAATGCGAAC
Found at i:7781507 original size:21 final size:21
Alignment explanation
Indices: 7781350--7781499 Score: 182
Period size: 21 Copynumber: 7.2 Consensus size: 21
7781340 TTTGGAATAA
*
7781350 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
7781371 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
* *
7781392 ATCGCAATGC-AAATAT-GTA-A
1 ATCGCAATGCGAACT-TCG-ACT
*
7781412 ATCGCAATGCGATA-GTCGACT
1 ATCGCAATGCGA-ACTTCGACT
7781433 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
7781454 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
* *
7781475 ATCGCATTGCGAACTTTGACT
1 ATCGCAATGCGAACTTCGACT
7781496 ATCG
1 ATCG
7781500 TATTGCGATT
Statistics
Matches: 113, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.15
21 95 0.84
22 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:7781542 original size:21 final size:21
Alignment explanation
Indices: 7781516--7781569 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
7781506 GATTTACATA
7781516 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAG
*
7781537 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCCAAG
*
7781558 TTCGCGTTGCGA
1 TTCGCATTGCGA
7781570 ATCTAGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAG
Found at i:7790170 original size:21 final size:21
Alignment explanation
Indices: 7790140--7790189 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
7790130 ATTATTACTA
7790140 TCGCAATGCGATTTTCCCAAT
1 TCGCAATGCGATTTTCCCAAT
*
7790161 TCGCATTGCGATTTTCCCAAT
1 TCGCAATGCGATTTTCCCAAT
7790182 TCGCAATG
1 TCGCAATG
7790190 TGAATAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCCAAT
Found at i:7790330 original size:20 final size:20
Alignment explanation
Indices: 7790182--7790416 Score: 138
Period size: 20 Copynumber: 11.6 Consensus size: 20
7790172 TTTTCCCAAT
* *
7790182 TCGCAATGTGAATAAGTAAA
1 TCGCAATGCGAATATGTAAA
* *
7790202 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATAT-GTAAA
*
7790223 TCGCAATGCG-ATACTG-ACTA
1 TCGCAATGCGAATA-TGTA-AA
**
7790243 TCGCAATGCG-ATAATACAAAA
1 TCGCAATGCGAAT-AT-GTAAA
* *
7790264 TCGCAATGCGATTTATGT-AT
1 TCGCAATGCGA-ATATGTAAA
** * * * *
7790284 TCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGAATAT-GTAAA
7790305 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGAATATGTAAA
* * *
7790325 TCGCAACGCGATTAAGTAAA
1 TCGCAATGCGAATATGTAAA
* *
7790345 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TATGTAAA
* *
7790366 TCGCAATGCAAATACGTAAA
1 TCGCAATGCGAATATGTAAA
* *
7790386 TCGCAATGCGAATCTG-ACTA
1 TCGCAATGCGAATATGTA-AA
7790406 TCGCAATGCGA
1 TCGCAATGCGA
7790417 TTTACATAGC
Statistics
Matches: 167, Mismatches: 36, Indels: 24
0.74 0.16 0.11
Matches are distributed among these distances:
19 5 0.03
20 101 0.60
21 57 0.34
22 3 0.02
23 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (20 bp):
TCGCAATGCGAATATGTAAA
Found at i:7790336 original size:41 final size:40
Alignment explanation
Indices: 7790161--7790419 Score: 141
Period size: 41 Copynumber: 6.3 Consensus size: 40
7790151 TTTTCCCAAT
* * * * *
7790161 TCGCATTGCGATTTTCCCAATTCGCAATGTGAATAAGTAAA
1 TCGCAATGCGATTTT-CAAAATCGCAATGCGAATATGTAAA
** *
7790202 TCGCAATGCGAATTTGGAAAATCGCAATGCG-ATACTG-ACTA
1 TCGCAATGCG-ATTTTCAAAATCGCAATGCGAATA-TGTA-AA
* * * *
7790243 TCGCAATGCGATAATACAAAATCGCAATGCGATTTATGT-AT
1 TCGCAATGCGAT-TTTCAAAATCGCAATGCGA-ATATGTAAA
** *
7790284 TCGCGTTGCGATTTTCATAATTCGCAATGCGAATATGTAAA
1 TCGCAATGCGATTTTCA-AAATCGCAATGCGAATATGTAAA
* **** * *
7790325 TCGCAACGCGATTAAGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGATTTTCAAAATCGCAATGCGAA-TATGTAAA
** * * * *
7790366 TCGCAATGC-AAATACGTAAATCGCAATGCGAATCTG-ACTA
1 TCGCAATGCGATTTTC-AAAATCGCAATGCGAATATGTA-AA
7790406 TCGCAATGCGATTT
1 TCGCAATGCGATTT
7790420 ACATAGCGCC
Statistics
Matches: 164, Mismatches: 41, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
39 1 0.01
40 42 0.26
41 113 0.69
42 6 0.04
43 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (40 bp):
TCGCAATGCGATTTTCAAAATCGCAATGCGAATATGTAAA
Found at i:7790355 original size:61 final size:61
Alignment explanation
Indices: 7790161--7790396 Score: 167
Period size: 61 Copynumber: 3.9 Consensus size: 61
7790151 TTTTCCCAAT
* ** * * ** *
7790161 TCGCATTGCGATTTTCCCAATTCGCAATGTGAATAAGTAAATCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGATTTTCATAATTCGCAATGCGAATATGTAAATCGCAATGCG-ATTAAGTAAA
** * ** * *
7790223 TCGCAATGCGATACTGACT-A-TCGCAATGCG-ATAATACAAAATCGCAATGCGATTTATGT-AT
1 TCGCAATGCGATTTTCA-TAATTCGCAATGCGAAT-AT-GTAAATCGCAATGCGA-TTAAGTAAA
** *
7790284 TCGCGTTGCGATTTTCATAATTCGCAATGCGAATATGTAAATCGCAACGCGATTAAGTAAA
1 TCGCAATGCGATTTTCATAATTCGCAATGCGAATATGTAAATCGCAATGCGATTAAGTAAA
*** * * *
7790345 TCGCAATGCGAATTAGGA-AAATCGCAATGCAAATACGTAAATCGCAATGCGA
1 TCGCAATGCG-ATTTTCATAATTCGCAATGCGAATATGTAAATCGCAATGCGA
7790397 ATCTGACTAT
Statistics
Matches: 132, Mismatches: 33, Indels: 19
0.72 0.18 0.10
Matches are distributed among these distances:
60 8 0.06
61 77 0.58
62 45 0.34
63 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (61 bp):
TCGCAATGCGATTTTCATAATTCGCAATGCGAATATGTAAATCGCAATGCGATTAAGTAAA
Found at i:7790986 original size:34 final size:34
Alignment explanation
Indices: 7790948--7791044 Score: 151
Period size: 34 Copynumber: 2.9 Consensus size: 34
7790938 CGAGAATGAA
** *
7790948 AATCGCAACGCGGAAATGACTATCGCAACGAGAT
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGAG
*
7790982 AATCGCAACGCGGAAATGAAAATCGCAATGAGAG
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGAG
7791016 AATCGCAACGC-GAAATGAAAATCGCAACG
1 AATCGCAACGCGGAAATGAAAATCGCAACG
7791045 CGAAACCAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
33 17 0.29
34 41 0.71
ACGTcount: A:0.42, C:0.22, G:0.24, T:0.12
Consensus pattern (34 bp):
AATCGCAACGCGGAAATGAAAATCGCAACGAGAG
Found at i:7791040 original size:19 final size:19
Alignment explanation
Indices: 7790942--7791060 Score: 87
Period size: 19 Copynumber: 6.7 Consensus size: 19
7790932 TAGTTTCGAG
7790942 AATGAAAATCGCAACGCGGA
1 AATGAAAATCGCAACGC-GA
**
7790962 AATGACTATCGCAA--CG-
1 AATGAAAATCGCAACGCGA
*
7790978 -A-GATAATCGCAACGCGGA
1 AATGAAAATCGCAACGC-GA
*
7790996 AATGAAAATCGCAA--TG-
1 AATGAAAATCGCAACGCGA
*
7791012 -A-GAGAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
7791029 AATGAAAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
**
7791048 AACCAAAATCGCA
1 AATGAAAATCGCA
7791061 TTGCGATTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
14 19 0.25
15 2 0.03
16 2 0.03
17 3 0.04
18 2 0.03
19 27 0.35
20 22 0.29
ACGTcount: A:0.45, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
AATGAAAATCGCAACGCGA
Found at i:7791078 original size:19 final size:19
Alignment explanation
Indices: 7791056--7791178 Score: 113
Period size: 20 Copynumber: 6.9 Consensus size: 19
7791046 GAAACCAAAA
*
7791056 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7791075 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7791089 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7791108 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
7791122 TCTCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7791141 TCCGCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT
*
7791161 CTCTCGTTGCGATTTTCA
1 -TCGCGTTGCGATTTTCA
7791179 GTTCAACCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 23
0.73 0.07 0.20
Matches are distributed among these distances:
14 19 0.23
16 6 0.07
17 6 0.07
19 21 0.25
20 31 0.37
21 1 0.01
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7791097 original size:14 final size:14
Alignment explanation
Indices: 7791078--7791134 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7791068 TTTCATTTCG
7791078 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7791092 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7791111 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7791125 CATTGCGATT
1 CGTTGCGATT
7791135 TTCATTTCCG
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7791103 original size:33 final size:33
Alignment explanation
Indices: 7791059--7791154 Score: 174
Period size: 33 Copynumber: 2.9 Consensus size: 33
7791049 ACCAAAATCG
7791059 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
*
7791092 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
7791125 CATTGCGATTTTCATTTCCGCGTTGCGATT
1 CATTGCGATTTTCATTT-CGCGTTGCGATT
7791155 TTCATTCTCT
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 48 0.80
34 12 0.20
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (33 bp):
CATTGCGATTTTCATTTCGCGTTGCGATTCTCT
Found at i:7794861 original size:14 final size:14
Alignment explanation
Indices: 7794842--7794877 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7794832 ATTGTTTAAT
7794842 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
7794856 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
7794870 TGATTTGT
1 TGATTTGT
7794878 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7795066 original size:19 final size:19
Alignment explanation
Indices: 7795016--7795059 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
7795006 ACAACGAGAG
7795016 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
7795035 AATCGCAACGCGAAACTAA
1 AATCGCAACGCGAAACTAA
7795054 AATCGC
1 AATCGC
7795060 GTTGCGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.45, C:0.27, G:0.16, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAACTAA
Found at i:7795133 original size:19 final size:19
Alignment explanation
Indices: 7795056--7795171 Score: 81
Period size: 19 Copynumber: 6.6 Consensus size: 19
7795046 GAAACTAAAA
*
7795056 TCGCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* **
7795075 TCGCTTTGCGA--TTC-CC
1 TCGCATTGCGATTTTCATT
*
7795091 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7795108 TCACATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7795127 TCGCATTACGA--TTC---
1 TCGCATTGCGATTTTCATT
* *
7795141 TCTCATTGCGATTTTTATT
1 TCGCATTGCGATTTTCATT
7795160 TCGCATTGCGAT
1 TCGCATTGCGAT
7795172 AGACATTAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
14 14 0.19
16 8 0.11
17 8 0.11
19 43 0.59
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7795139 original size:52 final size:52
Alignment explanation
Indices: 7795061--7795171 Score: 159
Period size: 52 Copynumber: 2.1 Consensus size: 52
7795051 TAAAATCGCG
* * * *
7795061 TTGCGATTTTCATTTCGCTTTGCGATTCCCTCGTTGTGATTTTCATTTCACA
1 TTGCGATTTTCATTTCGCATTACGATTCCCTCATTGCGATTTTCATTTCACA
* * *
7795113 TTGCGATTTTCATTTCGCATTACGATTCTCTCATTGCGATTTTTATTTCGCA
1 TTGCGATTTTCATTTCGCATTACGATTCCCTCATTGCGATTTTCATTTCACA
7795165 TTGCGAT
1 TTGCGAT
7795172 AGACATTAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTACGATTCCCTCATTGCGATTTTCATTTCACA
Found at i:7797954 original size:20 final size:20
Alignment explanation
Indices: 7797929--7798010 Score: 137
Period size: 20 Copynumber: 4.1 Consensus size: 20
7797919 ACACAAAAAT
*
7797929 CGCGATTCTAACTTTCGCAA
1 CGCGATTCTGACTTTCGCAA
7797949 CGCGATTCTGACTTTCGCAA
1 CGCGATTCTGACTTTCGCAA
7797969 CGCGATTCTGACTTTCGCAA
1 CGCGATTCTGACTTTCGCAA
* *
7797989 CGAGATTCTGACTATCGCAA
1 CGCGATTCTGACTTTCGCAA
7798009 CG
1 CG
7798011 AGATAATACA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (20 bp):
CGCGATTCTGACTTTCGCAA
Found at i:7798380 original size:20 final size:20
Alignment explanation
Indices: 7798355--7798410 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
7798345 CAACGGGGAA
*
7798355 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGACT
7798375 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
7798395 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
7798411 CGCAACGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.23, G:0.21, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:7798467 original size:19 final size:19
Alignment explanation
Indices: 7798439--7798532 Score: 154
Period size: 19 Copynumber: 5.0 Consensus size: 19
7798429 TTGCATTGCG
*
7798439 ATTTCTCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
7798458 ATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
7798477 ATTTCGCATTGCGA-TTTC
1 ATTTCGCATTGCGATTTTC
*
7798495 ATTTCGCATTGCGATTTTA
1 ATTTCGCATTGCGATTTTC
*
7798514 ATTTCGCGTTGCGATTTTC
1 ATTTCGCATTGCGATTTTC
7798533 TCGTTGCGAT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
18 18 0.26
19 52 0.74
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (19 bp):
ATTTCGCATTGCGATTTTC
Found at i:7798479 original size:12 final size:13
Alignment explanation
Indices: 7798432--7798460 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7798422 ATGAAAATTG
7798432 CATTGCGATTTCT
1 CATTGCGATTTCT
7798445 CATTGCGATTT-T
1 CATTGCGATTTCT
7798457 CATT
1 CATT
7798461 TCGCATTGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48
Consensus pattern (13 bp):
CATTGCGATTTCT
Found at i:7798495 original size:37 final size:37
Alignment explanation
Indices: 7798439--7798530 Score: 148
Period size: 37 Copynumber: 2.5 Consensus size: 37
7798429 TTGCATTGCG
* *
7798439 ATTTCTCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA-TTTCATTTCGCATTGCGATTTTA
7798477 ATTTCGCATTGCGATTTCATTTCGCATTGCGATTTTA
1 ATTTCGCATTGCGATTTCATTTCGCATTGCGATTTTA
*
7798514 ATTTCGCGTTGCGATTT
1 ATTTCGCATTGCGATTT
7798531 TCTCGTTGCG
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 38 0.75
38 13 0.25
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (37 bp):
ATTTCGCATTGCGATTTCATTTCGCATTGCGATTTTA
Found at i:7800146 original size:42 final size:42
Alignment explanation
Indices: 7800100--7800179 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
7800090 CAATGACAGT
* *
7800100 GGCCTCTTGAACGGTGGGGGGAGACTCTTGAGGGATGATAGG
1 GGCCTCTTGAACGATGGGAGGAGACTCTTGAGGGATGATAGG
*
7800142 GGCCTCTTGAACGATTGGAGGAGACTCTTGAGGGATGA
1 GGCCTCTTGAACGATGGGAGGAGACTCTTGAGGGATGA
7800180 AAGGTGAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.21, C:0.15, G:0.41, T:0.23
Consensus pattern (42 bp):
GGCCTCTTGAACGATGGGAGGAGACTCTTGAGGGATGATAGG
Found at i:7800546 original size:20 final size:19
Alignment explanation
Indices: 7800521--7800572 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
7800511 AAGAATAGTT
7800521 TACTTTCGCAACACGAAACA
1 TACTTTCGCAACACGAAA-A
*
7800541 TACTTTCGCAACGCGAAAA
1 TACTTTCGCAACACGAAAA
*
7800560 TGACTATCGCAAC
1 T-ACTTTCGCAAC
7800573 GCGGAAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.37, C:0.29, G:0.13, T:0.21
Consensus pattern (19 bp):
TACTTTCGCAACACGAAAA
Found at i:7800571 original size:40 final size:40
Alignment explanation
Indices: 7800526--7800638 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 40
7800516 TAGTTTACTT
*
7800526 TCGCAACACGAAACAT-ACTTTCGCAACGCGAAAATGACTA
1 TCGCAACACGAAA-ATGACTATCGCAACGCGAAAATGACTA
* * * * *
7800566 TCGCAACGCGGAAATGGCTATCGCAACGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTATCGCAACGCGAAAATGACTA
* * * *
7800606 TCGCAACGCGGAAATGGCTATCGCAATGCGAAA
1 TCGCAACACGAAAATGACTATCGCAACGCGAAA
7800639 TGAAAATCGT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.03
40 62 0.97
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.16
Consensus pattern (40 bp):
TCGCAACACGAAAATGACTATCGCAACGCGAAAATGACTA
Found at i:7800573 original size:20 final size:20
Alignment explanation
Indices: 7800546--7800638 Score: 141
Period size: 20 Copynumber: 4.7 Consensus size: 20
7800536 AAACATACTT
*
7800546 TCGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGGCTA
*
7800566 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
*
7800586 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
*
7800606 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
*
7800626 TCGCAATGCGAAA
1 TCGCAACGCGAAA
7800639 TGAAAATCGT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 69 1.00
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGGCTA
Found at i:7800647 original size:19 final size:19
Alignment explanation
Indices: 7800625--7800683 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
7800615 GGAAATGGCT
7800625 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7800644 ATCGTAA--CGACAA-G---
1 ATCGCAATGCGA-AATGAAA
7800658 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7800677 ATCGCAA
1 ATCGCAA
7800684 CGACAAGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 6 0.19
15 2 0.06
16 4 0.13
17 4 0.13
18 2 0.06
19 13 0.42
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7800715 original size:33 final size:33
Alignment explanation
Indices: 7800625--7800704 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
7800615 GGAAATGGCT
*
7800625 ATCGCAATGCGAAATGAAAATCGTAACGACAAG
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
7800658 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAG
*
7800691 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
7800705 CATAAATCGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.45, C:0.21, G:0.21, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAG
Found at i:7800733 original size:19 final size:19
Alignment explanation
Indices: 7800711--7800807 Score: 83
Period size: 19 Copynumber: 5.6 Consensus size: 19
7800701 GAAACATAAA
7800711 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7800730 TCGCGTTGCGA---TC-TT
1 TCGCATTGCGATTTTCATT
7800745 GTCG--TTGCGATTTTCATT
1 -TCGCATTGCGATTTTCATT
7800763 TCGCATTGCGA---T-ATT
1 TCGCATTGCGATTTTCATT
7800778 GTCG--TTGCGATTTTCATT
1 -TCGCATTGCGATTTTCATT
7800796 TCGCATTGCGAT
1 TCGCATTGCGAT
7800808 AGCCATTTTC
Statistics
Matches: 63, Mismatches: 1, Indels: 28
0.68 0.01 0.30
Matches are distributed among these distances:
14 12 0.19
15 5 0.08
16 9 0.14
17 9 0.14
18 5 0.08
19 23 0.37
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7800758 original size:33 final size:33
Alignment explanation
Indices: 7800716--7800808 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
7800706 ATAAATCGCA
* *
7800716 TTGCGATTTTCATTTCGCGTTGCGATCTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATATTGTCG
7800749 TTGCGATTTTCATTTCGCATTGCGATATTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATATTGTCG
7800782 TTGCGATTTTCATTTCGCATTGCGATA
1 TTGCGATTTTCATTTCGCATTGCGATA
7800809 GCCATTTTCG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATATTGTCG
Found at i:7800864 original size:19 final size:19
Alignment explanation
Indices: 7800792--7800865 Score: 94
Period size: 20 Copynumber: 3.8 Consensus size: 19
7800782 TTGCGATTTT
*
7800792 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
7800811 CATTTTCGCGTTGTGATAGC
1 CA-TTTCGCGTTGCGATAGC
*
7800831 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
7800851 CATTTCGTGTTGCGA
1 CATTTCGCGTTGCGA
7800866 AAGTAAACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 14 0.29
20 34 0.71
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:7801462 original size:23 final size:18
Alignment explanation
Indices: 7801404--7801469 Score: 96
Period size: 18 Copynumber: 3.7 Consensus size: 18
7801394 CGGGTCGATT
*
7801404 AGGTGATGGCTCTGGGTG
1 AGGTGATAGCTCTGGGTG
7801422 AGGTGATAGCTCTGGGTG
1 AGGTGATAGCTCTGGGTG
**
7801440 AGGTGATAGCTCTGTTTG
1 AGGTGATAGCTCTGGGTG
*
7801458 AGGTGATGGCTC
1 AGGTGATAGCTC
7801470 CCGAAGTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.15, C:0.12, G:0.42, T:0.30
Consensus pattern (18 bp):
AGGTGATAGCTCTGGGTG
Found at i:7803341 original size:21 final size:21
Alignment explanation
Indices: 7803309--7803383 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
7803299 CGCTTTGAAA
*
7803309 ATCGCATTGCGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
* * *
7803330 ATCTCGTTGCGA--AAGTCAGT
1 ATCGCGTTGCGATTATGT-ATT
* *
7803350 ATCGCATTGCGATTTTGTATT
1 ATCGCGTTGCGATTATGTATT
7803371 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
7803384 AGTCAGTATC
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
19 3 0.07
20 12 0.29
21 24 0.59
22 2 0.05
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.39
Consensus pattern (21 bp):
ATCGCGTTGCGATTATGTATT
Found at i:7803359 original size:20 final size:20
Alignment explanation
Indices: 7803309--7803403 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 20
7803299 CGCTTTGAAA
*
7803309 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* * *
7803330 ATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* *
7803350 ATCGCATTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
7803371 ATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
*
7803391 ATCACATTGCGAT
1 ATCGCATTGCGAT
7803404 TTTCCAAATT
Statistics
Matches: 56, Mismatches: 14, Indels: 9
0.71 0.18 0.11
Matches are distributed among these distances:
19 5 0.09
20 26 0.46
21 23 0.41
22 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:7803369 original size:41 final size:41
Alignment explanation
Indices: 7803309--7803406 Score: 160
Period size: 41 Copynumber: 2.4 Consensus size: 41
7803299 CGCTTTGAAA
* *
7803309 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
7803350 ATCGCATTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
7803391 ATCACATTGCGATTTT
1 ATCGCATTGCGATTTT
7803407 CCAAATTCGC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.39
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:7803422 original size:41 final size:41
Alignment explanation
Indices: 7803336--7803424 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 41
7803326 TATTATCTCG
* * ** * *
7803336 TTGCGAAAGTCAGTATCGCATTGCGATTTTGTATTATCGCG
1 TTGCGATAGTCAGTATCACATTGCGATTTTCAAATATCGCA
7803377 TTGCGATAGTCAGTATCACATTGCGATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTATCACATTGCGATTTT-CAAATATCGCA
7803418 TTGCGAT
1 TTGCGAT
7803425 TTACTTAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 39 0.95
42 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (41 bp):
TTGCGATAGTCAGTATCACATTGCGATTTTCAAATATCGCA
Found at i:7803457 original size:21 final size:21
Alignment explanation
Indices: 7803431--7803479 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
7803421 CGATTTACTT
7803431 AATCGCAAAGCG-AATTGGGAA
1 AATCGCAAAGCGAAATT-GGAA
*
7803452 AATCGCAACGCGAAATTGGAA
1 AATCGCAAAGCGAAATTGGAA
7803473 AATCGCA
1 AATCGCA
7803480 TTGCGATAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.14
Consensus pattern (21 bp):
AATCGCAAAGCGAAATTGGAA
Found at i:7803485 original size:21 final size:20
Alignment explanation
Indices: 7803440--7803514 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 20
7803430 TAATCGCAAA
**
7803440 GCGAATTGGGAAAATCGCAAC
1 GCGAATT-GGAAAATCGCATT
7803461 GCGAAATTGGAAAATCGCATT
1 GCG-AATTGGAAAATCGCATT
* *
7803482 GCG-ATAGTAATAATCGCATT
1 GCGAATTGGAA-AATCGCATT
7803502 GCGAATCTGGAAA
1 GCGAAT-TGGAAA
7803515 CTGATTTGCG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 5 0.11
20 12 0.27
21 20 0.45
22 7 0.16
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.21
Consensus pattern (20 bp):
GCGAATTGGAAAATCGCATT
Found at i:7811439 original size:22 final size:22
Alignment explanation
Indices: 7811406--7811449 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7811396 GGTTGGATAG
7811406 AGATCTATGGAGCCATATGAAA
1 AGATCTATGGAGCCATATGAAA
**
7811428 AGAT-TATAGGAGTTATATGAAA
1 AGATCTAT-GGAGCCATATGAAA
7811450 TTGAATCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (22 bp):
AGATCTATGGAGCCATATGAAA
Found at i:7811914 original size:31 final size:30
Alignment explanation
Indices: 7811876--7811967 Score: 107
Period size: 30 Copynumber: 3.0 Consensus size: 30
7811866 GAGTCGAGGG
7811876 TTACCTATGTCTTTCTAGACATATGGATAGT
1 TTACCTATGTCTTTC-AGACATATGGATAGT
* * *
7811907 TTACCTATGTCCTTAAGGACATATGGACAG-
1 TTACCTATGTCTTTCA-GACATATGGATAGT
7811937 TTACCTATGT-TCTTCAGAACATATGGATAGT
1 TTACCTATGTCT-TTCAG-ACATATGGATAGT
7811968 GGTCCTTCGA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
29 1 0.02
30 25 0.49
31 25 0.49
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (30 bp):
TTACCTATGTCTTTCAGACATATGGATAGT
Found at i:7820480 original size:167 final size:173
Alignment explanation
Indices: 7820199--7820546 Score: 503
Period size: 167 Copynumber: 2.0 Consensus size: 173
7820189 ATTAAATTTT
* *
7820199 AAATATTAAATATATTATATAACATATAGACTCAGCCCAAACCATTTAAAACCCAATTAATAATT
1 AAATATTAAATATA-TATATAACATATAGACTAAGCCCAAACAATTTAAAACCCAATTAATAATT
*
7820264 AAGATCCAATAACTTTTAAACCTAAATCAATATAATTAATTAAAAAAAATA-T-AAA-TTT-TTT
65 AAGATCCAATAACTTTTAAACCTAAATCAATATAATTAATTAAAAAAATTACTGAAATTTTATTT
* *
7820325 TATAATTATATTATTTAAATTAATTGTAAACTATTTTTTTAATTA
130 TATAATTATATTATTTAAATTAATTATAAACT-TTTTTTGAATTA
* * *
7820370 AAATATTAAATATA-A-AT-ACATTTAGCCTAAGCCCAAACAATTTAAAACTCAATTAATAATTT
1 AAATATTAAATATATATATAACATATAGACTAAGCCCAAACAATTTAAAACCCAATTAATAA-TT
* *
7820432 AAGATCCAATAACTTTTAAATCTAAATCAATATTAATTAATTAAAAAATTTATCTGAAATTTTTA
65 AAGATCCAATAACTTTTAAACCTAAATCAATA-TAATTAATTAAAAAAATTA-CTGAAA-TTTTA
7820497 TTTTATAATTATATTATTTAAATTAATTATAAACTTTTTTTGAATTA
127 TTTTATAATTATATTATTTAAATTAATTATAAACTTTTTTTGAATTA
7820544 AAA
1 AAA
7820547 ACATTTAATT
Statistics
Matches: 159, Mismatches: 10, Indels: 13
0.87 0.05 0.07
Matches are distributed among these distances:
167 37 0.23
168 35 0.22
169 18 0.11
171 15 0.09
172 3 0.02
174 17 0.11
175 34 0.21
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (173 bp):
AAATATTAAATATATATATAACATATAGACTAAGCCCAAACAATTTAAAACCCAATTAATAATTA
AGATCCAATAACTTTTAAACCTAAATCAATATAATTAATTAAAAAAATTACTGAAATTTTATTTT
ATAATTATATTATTTAAATTAATTATAAACTTTTTTTGAATTA
Found at i:7822286 original size:3 final size:3
Alignment explanation
Indices: 7822280--7822341 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
7822270 AATAATATAT
*
7822280 TTA TTA TTA TTA TTA TAA TTA CTTA TTA TTA TTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * *
7822325 ATA CTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA TT
7822342 TTTGCAGACT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 2 0.04
3 45 0.90
4 3 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:7822306 original size:22 final size:23
Alignment explanation
Indices: 7822271--7822318 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
7822261 CCGGACTTAA
*
7822271 ATAATATATTTATTATTATTATT
1 ATAATATACTTATTATTATTATT
7822294 ATAAT-TACTTATTATTATTATT
1 ATAATATACTTATTATTATTATT
7822316 ATA
1 ATA
7822319 TTATTAATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
ATAATATACTTATTATTATTATT
Found at i:7824341 original size:21 final size:21
Alignment explanation
Indices: 7824315--7824358 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7824305 ATTGGTACCG
7824315 AAAGGACGGTTCAAGGGTGCT
1 AAAGGACGGTTCAAGGGTGCT
7824336 AAAGGACGGTTCAAGGGTGCT
1 AAAGGACGGTTCAAGGGTGCT
7824357 AA
1 AA
7824359 TCCTTCCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.36, T:0.18
Consensus pattern (21 bp):
AAAGGACGGTTCAAGGGTGCT
Found at i:7828269 original size:106 final size:106
Alignment explanation
Indices: 7828112--7829443 Score: 2168
Period size: 106 Copynumber: 12.6 Consensus size: 106
7828102 ATATCGTGCC
* * * *
7828112 ACTCGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
7828177 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
7828218 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828283 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7828324 ACTCCAGACGACGTATGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828389 AATATCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7828430 ACTCCAGACAACGTATGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828495 AATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* **
7828536 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828601 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7828642 ACTCCAGACGACGTATGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
7828707 AATATCAAAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7828748 ACTCCAGACAACGTATGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828813 AATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
7828854 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTT-CT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7828918 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
7828959 ACTCCAGACAACGTATGTTCAACTTCACGACGAAGGGACCGCTGGTTGT---CAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
7829021 AATATCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7829062 ACTCCAGACAACGTATGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
7829127 AATATCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7829168 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
7829233 AATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
7829274 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* * * *
7829339 AATTTCAGAGTCAATTTCAACTTCATAGCAAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
7829380 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTC
7829444 AACTTCACGA
Statistics
Matches: 1153, Mismatches: 68, Indels: 9
0.94 0.06 0.01
Matches are distributed among these distances:
102 9 0.01
103 88 0.08
105 87 0.08
106 965 0.84
107 4 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:7829630 original size:84 final size:85
Alignment explanation
Indices: 7829497--7829673 Score: 257
Period size: 84 Copynumber: 2.1 Consensus size: 85
7829487 AAAGACCCCC
* * *
7829497 GAGTTCGATTACGCTCAGCTCTAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTAT
1 GAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTAT
* * * *
7829562 CTTCTAACCAAAGATCT-TT
66 CTGCCAACCAAAGACCTGAT
* * *
7829581 GAGTTCGACTACGCTCAGCTCCGAGGCACATCATTTGCAGCATAGCTTAAGTTGAGAAGGGCTAT
1 GAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTAT
7829646 CTGCCAACCAAAGACCTGAT
66 CTGCCAACCAAAGACCTGAT
7829666 GAGTTCGA
1 GAGTTCGA
7829674 TTTCATTCAG
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 73 0.89
85 9 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (85 bp):
GAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTAT
CTGCCAACCAAAGACCTGAT
Found at i:7829912 original size:3 final size:3
Alignment explanation
Indices: 7829901--7829962 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
7829891 CTTAATAATA
7829901 TAT TA- TAT TAT TAT TAT TAT TA- TAT TACT TAT TAT TAT TA- TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T
* *
7829945 TAT AAC TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
7829963 TTTGCAGACT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
2 8 0.16
3 36 0.73
4 5 0.10
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:7829947 original size:15 final size:17
Alignment explanation
Indices: 7829901--7829962 Score: 83
Period size: 18 Copynumber: 3.7 Consensus size: 17
7829891 CTTAATAATA
7829901 TATTATATTATTATTAT
1 TATTATATTATTATTAT
7829918 TATTATATTACTTATTAT
1 TATTATATTA-TTATTAT
* *
7829936 TATTATA-T-TTATAAC
1 TATTATATTATTATTAT
7829951 TATTATATTATT
1 TATTATATTATT
7829963 TTTGCAGACT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
15 12 0.30
16 1 0.03
17 13 0.32
18 14 0.35
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTATATTATTATTAT
Found at i:7835029 original size:38 final size:38
Alignment explanation
Indices: 7834990--7835097 Score: 119
Period size: 38 Copynumber: 2.8 Consensus size: 38
7834980 TTATTCATAA
*
7834990 TTCTCAAATTATTTCACTCTAACATTCTAAAATCCTAAT
1 TTCTTAAATTATTTCACT-TAACATTCTAAAATCCTAAT
* * * * *
7835029 TTCTTAAATT-TTGGCACATAACGTTCTAAATTCTTAAT
1 TTCTTAAATTATT-TCACTTAACATTCTAAAATCCTAAT
*
7835067 TTATTAAATTATTTCACATTAACATTCTAAA
1 TTCTTAAATTATTTCAC-TTAACATTCTAAA
7835098 TTATTTTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
38 31 0.55
39 25 0.45
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.44
Consensus pattern (38 bp):
TTCTTAAATTATTTCACTTAACATTCTAAAATCCTAAT
Found at i:7835367 original size:26 final size:26
Alignment explanation
Indices: 7835338--7835416 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
7835328 TATAATATAA
7835338 TTTTATATATA-TTAACTTAAAAATAT
1 TTTTATATATACTTAA-TTAAAAATAT
*
7835364 TTTTATAT-TACTT-ATTAAATATA-
1 TTTTATATATACTTAATTAAAAATAT
7835387 TTTTAT-TATAACTTAATTTAAAAATAT
1 TTTTATATAT-ACTTAA-TTAAAAATAT
7835414 TTT
1 TTT
7835417 ATTTTTATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
22 1 0.02
23 7 0.16
24 12 0.27
25 4 0.09
26 18 0.40
27 3 0.07
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTATATATACTTAATTAAAAATAT
Found at i:7835414 original size:21 final size:21
Alignment explanation
Indices: 7835390--7835434 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7835380 AAATATATTT
7835390 TATTATAACTTAATTTAAAAA
1 TATTATAACTTAATTTAAAAA
* ** *
7835411 TATTTTATTTTTATTTAAAAA
1 TATTATAACTTAATTTAAAAA
7835432 TAT
1 TAT
7835435 AATTTATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTATAACTTAATTTAAAAA
Found at i:7835417 original size:26 final size:25
Alignment explanation
Indices: 7835337--7835459 Score: 84
Period size: 26 Copynumber: 5.0 Consensus size: 25
7835327 TTATAATATA
7835337 ATTTTA-TATATA-TTAACTTAAAAAT
1 ATTTTATTATA-ACTTAA-TTAAAAAT
* *
7835362 ATTTT-TATATTACTT-ATTAAATAT
1 ATTTTAT-TATAACTTAATTAAAAAT
7835386 ATTTTATTATAACTTAATTTAAAAAT
1 ATTTTATTATAACTTAA-TTAAAAAT
*
7835412 ATTTTATT-T---TTATTTAAAAAT
1 ATTTTATTATAACTTAATTAAAAAT
* *
7835433 ATAATTTATTTTAA-TTTATTAAAAAT
1 AT--TTTATTATAACTTAATTAAAAAT
7835459 A
1 A
7835460 AGAATAAATT
Statistics
Matches: 80, Mismatches: 7, Indels: 21
0.74 0.06 0.19
Matches are distributed among these distances:
21 10 0.12
22 3 0.04
23 6 0.08
24 20 0.25
25 10 0.12
26 31 0.39
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTTTATTATAACTTAATTAAAAAT
Found at i:7835433 original size:49 final size:47
Alignment explanation
Indices: 7835322--7835459 Score: 129
Period size: 50 Copynumber: 2.9 Consensus size: 47
7835312 CGTGACCCAA
*
7835322 ATTATTT-ATAATATAATTTTA-TATATATTAACTTAAAAATATTTTTAT
1 ATTATTTAAAAATAT-ATTTTATTATA-ATTAA-TTAAAAATATTTTTAT
* *
7835370 ATTACTTATTAAATATATTTTATTATAACTTAATTTAAAAATA-TTTTATT
1 ATTATTTA-AAAATATATTTTATTATAA-TTAA-TTAAAAATATTTTTA-T
* * * *
7835420 TTTATTTAAAAATATAATTTATTTTAATTTATTAAAAATA
1 ATTATTTAAAAATATATTTTATTATAATTAATTAAAAATA
7835460 AGAATAAATT
Statistics
Matches: 75, Mismatches: 10, Indels: 11
0.78 0.10 0.11
Matches are distributed among these distances:
47 9 0.12
48 9 0.12
49 28 0.37
50 29 0.39
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (47 bp):
ATTATTTAAAAATATATTTTATTATAATTAATTAAAAATATTTTTAT
Found at i:7835440 original size:23 final size:21
Alignment explanation
Indices: 7835399--7835450 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
7835389 TTATTATAAC
7835399 TTAATTTAAAAATATTTTATT
1 TTAATTTAAAAATATTTTATT
*
7835420 TTTATTTAAAAATATAATTTATT
1 TTAATTTAAAAATAT--TTTATT
7835443 TTAATTTA
1 TTAATTTA
7835451 TTAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 14 0.52
23 13 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTAATTTAAAAATATTTTATT
Found at i:7838928 original size:15 final size:15
Alignment explanation
Indices: 7838908--7838941 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7838898 CCAATCAATT
7838908 TATTAATAAATTAAA
1 TATTAATAAATTAAA
* *
7838923 TATTAATAATTTATA
1 TATTAATAAATTAAA
7838938 TATT
1 TATT
7838942 TATTTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATAAATTAAA
Found at i:7838955 original size:26 final size:28
Alignment explanation
Indices: 7838926--7838977 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
7838916 AATTAAATAT
* *
7838926 TAATAATTTAT-ATATTTAT-TTATAAA
1 TAATAATATATCAAATTTATATTATAAA
7838952 TAATAATATATCAAATTTATATTATA
1 TAATAATATATCAAATTTATATTATA
7838978 TATATGTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 7 0.32
28 5 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (28 bp):
TAATAATATATCAAATTTATATTATAAA
Done.