Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 55
Found at i:7838969 original size:35 final size:34
Alignment explanation
Indices: 7838905--7838973 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
7838895 AAACCAATCA
*
7838905 ATTTATTAATAAATTAAATATTAATAATTTATAT
1 ATTTATTAATAAATAAAATATTAATAATTTATAT
* *
7838939 ATTTATTTATAAATAATAATATATCA-AATTTATAT
1 ATTTATTAATAAATAA-AATAT-TAATAATTTATAT
7838974 TATATATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 14 0.47
35 14 0.47
36 2 0.07
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
ATTTATTAATAAATAAAATATTAATAATTTATAT
Found at i:7841647 original size:24 final size:25
Alignment explanation
Indices: 7841605--7841651 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
7841595 CTCAAAAAAA
7841605 TAAAATTAGAAGCTCGATTGAAGCC
1 TAAAATTAGAAGCTCGATTGAAGCC
* *
7841630 TAAAATTCG-AGCTTGATTGAAG
1 TAAAATTAGAAGCTCGATTGAAG
7841652 TGAAAGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (25 bp):
TAAAATTAGAAGCTCGATTGAAGCC
Found at i:7842018 original size:17 final size:17
Alignment explanation
Indices: 7841996--7842032 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7841986 GGTAGCATGA
7841996 CCGGTTAGCTAACCGAT
1 CCGGTTAGCTAACCGAT
* *
7842013 CCGGTTCGCTAACCGGT
1 CCGGTTAGCTAACCGAT
7842030 CCG
1 CCG
7842033 ATTCTGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.22
Consensus pattern (17 bp):
CCGGTTAGCTAACCGAT
Found at i:7843298 original size:157 final size:159
Alignment explanation
Indices: 7843115--7843406 Score: 435
Period size: 160 Copynumber: 1.8 Consensus size: 159
7843105 CCCGATTTCA
* *
7843115 TTATTTCTTCAATTCCTCCTTCATTTTAAGTCC-AT-TTTCACCAAATTTGAACCACAAGCTCTT
1 TTATTTCTTCAATTCCTCATTCATTTTAAGTCCGATGTTTCACCAAATTTGAACCACAAGCTCCT
* * *
7843178 AAACCATAGTAGAATACATGTTTACTTTCAATTCCTCTTTTTGATAACAATTTTTTTATTTTTCA
66 AAACCATAGAAGAATACATGTGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTTATTTTTCA
7843243 ATTTAGTCCTTCAATTTTTCATAATCTCC
131 ATTTAGTCCTTCAATTTTTCATAATCTCC
** * * * * * *
7843272 TTATTTCTTCAATTTGTCATTTATTTTAATTCCGTTTGTTTTACCAAATTTGAGCCACATGCTCC
1 TTATTTCTTCAATTCCTCATTCATTTTAAGTCCG-ATGTTTCACCAAATTTGAACCACAAGCTCC
*
7843337 TAAACCATAGAAGAATACATGTGTACTTTCAATTTCTCTTTTTGATAACAAATTTTTTATTTTTC
65 TAAACCATAGAAGAATACATGTGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTTATTTTTC
7843402 AATTT
130 AATTT
7843407 GTTATTTATT
Statistics
Matches: 118, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
157 28 0.24
159 1 0.01
160 89 0.75
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.47
Consensus pattern (159 bp):
TTATTTCTTCAATTCCTCATTCATTTTAAGTCCGATGTTTCACCAAATTTGAACCACAAGCTCCT
AAACCATAGAAGAATACATGTGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTTATTTTTCA
ATTTAGTCCTTCAATTTTTCATAATCTCC
Found at i:7843486 original size:118 final size:121
Alignment explanation
Indices: 7843272--7843488 Score: 266
Period size: 118 Copynumber: 1.8 Consensus size: 121
7843262 CATAATCTCC
* * ** *
7843272 TTATTTCTTCAATTTGTCATTTATTTTAATTCCGTTTGTTTTACCAAATTTGAGCCACATGCTCC
1 TTATTTCTTCAATTTGTCATTTATTTTAAGTCCGCTTGTTTTACCAAATTTGAAACACATGCTCA
* ** *
7843337 TAAACCATAGAAGAATACATGTGTACTTTCAATTTCTCTTTTTGATAACAAATTTT
66 TAAACCACAGAAGAATACACATGAACTTTCAATTTCTCTTTTTGATAACAAATTTT
*
7843393 TTATTT-TTCAATTTGTTATTTATTTTAAGTCC-CTT-TTTTACCAAATTTGAAACACATGCTCA
1 TTATTTCTTCAATTTGTCATTTATTTTAAGTCCGCTTGTTTTACCAAATTTGAAACACATGCTCA
*
7843455 TATACCACA-ATAGAATACCCACAT-AAC-TTCAATT
66 TAAACCACAGA-AGAATA--CACATGAACTTTCAATT
7843489 GTTATTTTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
117 1 0.01
118 44 0.54
119 4 0.05
120 27 0.33
121 6 0.07
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.44
Consensus pattern (121 bp):
TTATTTCTTCAATTTGTCATTTATTTTAAGTCCGCTTGTTTTACCAAATTTGAAACACATGCTCA
TAAACCACAGAAGAATACACATGAACTTTCAATTTCTCTTTTTGATAACAAATTTT
Found at i:7844202 original size:16 final size:16
Alignment explanation
Indices: 7844181--7844215 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7844171 GATTAGTGAG
* *
7844181 AAAAATATATTAAATT
1 AAAAATAAATTAAAAT
7844197 AAAAATAAATTAAAAT
1 AAAAATAAATTAAAAT
7844213 AAA
1 AAA
7844216 TGTAATTGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATAAATTAAAAT
Found at i:7845207 original size:19 final size:20
Alignment explanation
Indices: 7845169--7845207 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7845159 AATGAAGTAA
*
7845169 AAAAATTAATATTACGAATC
1 AAAAATAAATATTACGAATC
7845189 AAAAATAAATATTAC-AATC
1 AAAAATAAATATTACGAATC
7845208 TTCCATGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAAATAAATATTACGAATC
Found at i:7851505 original size:2 final size:2
Alignment explanation
Indices: 7851498--7851523 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7851488 ACTCATATGC
7851498 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7851524 TGAAAATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7853599 original size:16 final size:16
Alignment explanation
Indices: 7853580--7853610 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7853570 TGTGTTTTGA
*
7853580 TTGTTTTTTTTAGTTC
1 TTGTTTTGTTTAGTTC
7853596 TTGTTTTGTTTAGTT
1 TTGTTTTGTTTAGTT
7853611 TAATGTTGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.03, G:0.16, T:0.74
Consensus pattern (16 bp):
TTGTTTTGTTTAGTTC
Found at i:7855790 original size:160 final size:164
Alignment explanation
Indices: 7855486--7855809 Score: 620
Period size: 160 Copynumber: 2.0 Consensus size: 164
7855476 GCTTCATGTT
7855486 GATCAAACAAAGAGAATAAGAAAAAGAAAAAAAATTATTTTCTAGTGTTTTAAGTCAATTTTGGG
1 GATCAAACAAAGAGAATAAGAAAAAGAAAAAAAATTATTTTCTAGTGTTTTAAGTCAATTTTGGG
7855551 TGAGGAAAAGTTTTTAGGGTGTTAAAATGGGTTTAAAGAATTATTTTATTAAGCTGAAAAATAAC
66 TGAGGAAAAGTTTTTAGGGTGTTAAAATGGGTTTAAAGAATTATTTTATTAAGCTGAAAAATAAC
7855616 ATTAACGTGTCACGTCAAATGAACTAATGGGAGG
131 ATTAACGTGTCACGTCAAATGAACTAATGGGAGG
7855650 GATCAAACAAAGAGAATAAGAAAAAG-AAAAAAATTA-TTTCTAGTGTTTTAAGTCAATTTTGGG
1 GATCAAACAAAGAGAATAAGAAAAAGAAAAAAAATTATTTTCTAGTGTTTTAAGTCAATTTTGGG
7855713 TGAGGAAAAG-TTTTAGGGTGTTAAAATGGGTTTAAAG-ATTATTTTATTAAGCTGAAAAATAAC
66 TGAGGAAAAGTTTTTAGGGTGTTAAAATGGGTTTAAAGAATTATTTTATTAAGCTGAAAAATAAC
7855776 ATTAACGTGTCACGTCAAATGAACTAATGGGAGG
131 ATTAACGTGTCACGTCAAATGAACTAATGGGAGG
7855810 TAAGGTCAAG
Statistics
Matches: 160, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
160 60 0.38
161 27 0.17
162 37 0.23
163 10 0.06
164 26 0.16
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (164 bp):
GATCAAACAAAGAGAATAAGAAAAAGAAAAAAAATTATTTTCTAGTGTTTTAAGTCAATTTTGGG
TGAGGAAAAGTTTTTAGGGTGTTAAAATGGGTTTAAAGAATTATTTTATTAAGCTGAAAAATAAC
ATTAACGTGTCACGTCAAATGAACTAATGGGAGG
Found at i:7856324 original size:24 final size:24
Alignment explanation
Indices: 7856292--7856338 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7856282 CGAAGACAAT
*
7856292 CTTAAAGAATTTAATGTTACATTA
1 CTTAAAGAATTTAACGTTACATTA
7856316 CTTAAAGAATTTAACGTTACATT
1 CTTAAAGAATTTAACGTTACATT
7856339 CTATTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (24 bp):
CTTAAAGAATTTAACGTTACATTA
Found at i:7857448 original size:31 final size:32
Alignment explanation
Indices: 7857391--7857451 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
7857381 AATTTTATCC
* *
7857391 TTGAACTTCAGATAAAAATATTAATTTAACCT
1 TTGAAATTCAGATAAAAATATCAATTTAACCT
*
7857423 TTGAAATTTAGAT-AAAATATCAATTTAAC
1 TTGAAATTCAGATAAAAATATCAATTTAAC
7857452 TTATGAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38
Consensus pattern (32 bp):
TTGAAATTCAGATAAAAATATCAATTTAACCT
Found at i:7859155 original size:70 final size:69
Alignment explanation
Indices: 7859028--7859167 Score: 255
Period size: 71 Copynumber: 2.0 Consensus size: 69
7859018 GTAGGGTCCT
7859028 TTGCAAACAAGTTATTTTTTTTGGAATAACAATTGGATACTTTTCTCAAGATAAAGTAAGAAAAA
1 TTGCAAACAAGTTATTTTTTTTGGAATAACAATTGGATACTTTTCTCAAGATAAAGTAAG-AAAA
7859093 TATCA
65 TATCA
7859098 TTGCAAACAAGTTATTTTTTTTTGGAATAACAATTGGATACTTTTCTCAAGAT-AAGTAAGAAAA
1 TTGCAAACAAGTTA-TTTTTTTTGGAATAACAATTGGATACTTTTCTCAAGATAAAGTAAGAAAA
7859162 TATCA
65 TATCA
7859167 T
1 T
7859168 CATTTCAAAG
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
69 10 0.14
70 21 0.30
71 38 0.55
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (69 bp):
TTGCAAACAAGTTATTTTTTTTGGAATAACAATTGGATACTTTTCTCAAGATAAAGTAAGAAAAT
ATCA
Found at i:7867217 original size:35 final size:35
Alignment explanation
Indices: 7867155--7867229 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 35
7867145 TTCATGTTCA
*
7867155 AAATTCCAAAACACTTCAATTTCATTCTAAGCCCT
1 AAATTCCAAAACACTTCAATTTCATTCTAAACCCT
* *
7867190 AAATTCCAAAATACTTTAATTAT-ATTCTAAACCCT
1 AAATTCCAAAACACTTCAATT-TCATTCTAAACCCT
7867225 AAATT
1 AAATT
7867230 GAAGTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 35 0.97
36 1 0.03
ACGTcount: A:0.41, C:0.23, G:0.01, T:0.35
Consensus pattern (35 bp):
AAATTCCAAAACACTTCAATTTCATTCTAAACCCT
Found at i:7867300 original size:35 final size:34
Alignment explanation
Indices: 7867224--7867301 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 34
7867214 TTCTAAACCC
*
7867224 TAAATTGAAGTATTTTAAAATTTAGGGTTTAAAA
1 TAAATTGAAGTATTTTAAAATTTAGAGTTTAAAA
* * *
7867258 TATAATTGAATTATTTTGAAATTTAGAGTTTAGAA
1 TA-AATTGAAGTATTTTAAAATTTAGAGTTTAAAA
7867293 TGAAATTGA
1 T-AAATTGA
7867302 GGACTGAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 2 0.05
35 35 0.92
36 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (34 bp):
TAAATTGAAGTATTTTAAAATTTAGAGTTTAAAA
Found at i:7867995 original size:23 final size:22
Alignment explanation
Indices: 7867953--7867996 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7867943 TCTGAAATAA
* *
7867953 TATTCATTAAAAATATTATTTT
1 TATTCAATAAAAATAATATTTT
7867975 TATTCAATAAAAATAGATATTT
1 TATTCAATAAAAATA-ATATTT
7867997 AATTGAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTCAATAAAAATAATATTTT
Found at i:7878730 original size:36 final size:35
Alignment explanation
Indices: 7878660--7878730 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
7878650 TATATTTTTA
*
7878660 ATTTTGTAAAAAAATTATATAAATATTATGAATTT
1 ATTTTGTAAAAAAATTATATAAATATTATCAATTT
* *
7878695 ATTTTTTAAAGAAAA-TATATAAATATTTTACAATTT
1 ATTTTGTAAA-AAAATTATATAAATATTAT-CAATTT
7878731 GTAATATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 22 0.71
36 9 0.29
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (35 bp):
ATTTTGTAAAAAAATTATATAAATATTATCAATTT
Found at i:7879927 original size:34 final size:35
Alignment explanation
Indices: 7879881--7879978 Score: 128
Period size: 34 Copynumber: 2.8 Consensus size: 35
7879871 TCGTCCTACT
*
7879881 AGGATTCGAACTCCTAAAAATAGGATATAA-TT-TC
1 AGGATTCAAACTCCTAAAAATAGGATA-AATTTGTC
*
7879915 AGGATTCAAACTCCTAAAAATAGGATGAAATTTTGTT
1 AGGATTCAAACTCCTAAAAATAGGAT-AAA-TTTGTC
*
7879952 AGGATTCAAACTCCTAAAAATATGATA
1 AGGATTCAAACTCCTAAAAATAGGATA
7879979 GAGTTCTACT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
34 27 0.47
35 1 0.02
36 3 0.05
37 26 0.46
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (35 bp):
AGGATTCAAACTCCTAAAAATAGGATAAATTTGTC
Found at i:7880688 original size:23 final size:23
Alignment explanation
Indices: 7880636--7880688 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
7880626 TTATGTGTAT
*
7880636 TTTATTTATTTATATATATTACC
1 TTTATTTATTTATATATATTAAC
7880659 TTT-TTTATTT-TATAT-TTATAC
1 TTTATTTATTTATATATATTA-AC
7880680 TATTATTTA
1 T-TTATTTA
7880689 CTATCATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.12
21 7 0.27
22 9 0.35
23 7 0.27
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTATTTATTTATATATATTAAC
Found at i:7880700 original size:76 final size:74
Alignment explanation
Indices: 7880566--7880722 Score: 171
Period size: 76 Copynumber: 2.1 Consensus size: 74
7880556 TTCTAACATC
* * *
7880566 TATTTACATATATTACCTTTTATCATTATTATATATATTATATTTATTGCTTCATTTTCTTTA-T
1 TATTTATATATATTACCTTTTATCATTATTATATATATTATATTTATTACTTCATTTTCTATACT
7880630 GTGTATTTTATT
66 -T-TA-TTTATT
* *
7880642 TATTTATATATATTACCTTTT-TTATT-TTATATTTA-TACTA-TTATTTACTATCATTTTTCTA
1 TATTTATATATATTACCTTTTATCATTATTATATATATTA-TATTTA-TTACT-TCA-TTTTCTA
7880703 TACTTTATTTATT
62 TACTTTATTTATT
7880716 TATTTAT
1 TATTTAT
7880723 TATTTTATTT
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
73 5 0.07
74 27 0.38
75 9 0.13
76 29 0.41
77 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (74 bp):
TATTTATATATATTACCTTTTATCATTATTATATATATTATATTTATTACTTCATTTTCTATACT
TTATTTATT
Found at i:7880719 original size:8 final size:9
Alignment explanation
Indices: 7880706--7880792 Score: 72
Period size: 8 Copynumber: 9.6 Consensus size: 9
7880696 TTTTCTATAC
7880706 TTTATTTA-
1 TTTATTTAT
7880714 TTTATTTAT
1 TTTATTTAT
*
7880723 TAT-TTTAT
1 TTTATTTAT
7880731 TTTATTTTAT
1 TTTA-TTTAT
*
7880741 TTCTTTTTAT
1 TT-TATTTAT
* *
7880751 TTTGGTTGAAT
1 TTT-ATT-TAT
7880762 TTTATTTAT
1 TTTATTTAT
*
7880771 TTTATTTTT
1 TTTATTTAT
7880780 TTTATTT-T
1 TTTATTTAT
7880788 TTTAT
1 TTTAT
7880793 ATCTAACATG
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
8 21 0.32
9 20 0.31
10 18 0.28
11 6 0.09
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTATTTAT
Found at i:7880732 original size:5 final size:5
Alignment explanation
Indices: 7880722--7880787 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
7880712 TATTTATTTA
* **
7880722 TTATT TTATT TTATT TTATT TCT-TT TTATT TTGGTT GAATT TTA-T TTATT
1 TTATT TTATT TTATT TTATT T-TATT TTATT TT-ATT TTATT TTATT TTATT
7880772 TTATT TT-TT TTATT TT
1 TTATT TTATT TTATT TT
7880788 TTTATATCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
4 9 0.18
5 38 0.76
6 3 0.06
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:7880790 original size:10 final size:10
Alignment explanation
Indices: 7880714--7880792 Score: 50
Period size: 10 Copynumber: 7.5 Consensus size: 10
7880704 ACTTTATTTA
7880714 TTTATTTATTAT
1 TTTATTT-TT-T
*
7880726 TTTATTTTAT
1 TTTATTTTTT
*
7880736 TTTATTTCTT
1 TTTATTTTTT
**
7880746 TTTATTTTGG
1 TTTATTTTTT
* * *
7880756 TTGAATTTTA
1 TTTATTTTTT
7880766 TTTATTTTATT
1 TTTATTTT-TT
*
7880777 TTTTTTATTTT
1 TTTATT-TTTT
7880788 TTTAT
1 TTTAT
7880793 ATCTAACATG
Statistics
Matches: 50, Mismatches: 15, Indels: 5
0.71 0.21 0.07
Matches are distributed among these distances:
10 28 0.56
11 13 0.26
12 9 0.18
ACGTcount: A:0.18, C:0.01, G:0.04, T:0.77
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:7883806 original size:16 final size:16
Alignment explanation
Indices: 7883780--7883830 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
7883770 AGATCCAATC
7883780 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
7883795 AAGAAGCAAAAAAGCAA
1 AAGAA-CAAAAAAGCAA
*
7883812 AA-AA-AAACAAAGAAA
1 AAGAACAAA-AAAGCAA
7883827 AAGA
1 AAGA
7883831 TAAACAAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.10
15 13 0.42
16 11 0.35
17 4 0.13
ACGTcount: A:0.78, C:0.08, G:0.14, T:0.00
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:7884538 original size:22 final size:22
Alignment explanation
Indices: 7884510--7884560 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
7884500 CCCCATCAAT
7884510 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
7884532 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
*
7884554 CCCTTGA
1 CCTTTGA
7884561 CCAAACACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:7884975 original size:18 final size:18
Alignment explanation
Indices: 7884952--7884987 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7884942 TCAACATCAA
* *
7884952 ATATTGGGGCATTTTTGG
1 ATATTGAGGCATCTTTGG
7884970 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
7884988 GGATTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:7885455 original size:36 final size:36
Alignment explanation
Indices: 7885415--7885747 Score: 273
Period size: 36 Copynumber: 9.4 Consensus size: 36
7885405 ACTCATGATT
* * * *
7885415 GTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACC
1 GTTTCTCTTGAAACAAGATTTGTCTCTCTTGAGACA
* * * *
7885451 GTTTTCACTAG-AA-GAGTTTTGTCTCTCTTGAGACA
1 G-TTTCTCTTGAAACAAGATTTGTCTCTCTTGAGACA
*
7885486 GTTTCCCTTGAAACAA-ATTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAGA-TTTGTCTCTCTTGAGACA
*
7885522 GTTTCTCTTGAAACAA-ATTTCGTCTATCTTGAGACA
1 GTTTCTCTTGAAACAAGATTT-GTCTCTCTTGAGACA
* * *
7885558 GTTTCCCTTGAAATAAGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAGATTTGTCTCTCTTGAGACA
* * * *
7885594 GTTTCCCTTGAAACAA-A-----ATAT-TTGA-ATA
1 GTTTCTCTTGAAACAAGATTTGTCTCTCTTGAGACA
*
7885622 TGTTT-TCTTTGAAACAA-ATTTCGTCTCCCTTGAGACA
1 -GTTTCTC-TTGAAACAAGATTT-GTCTCTCTTGAGACA
* * *
7885659 GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAAC-AAGATTTGTCTCTCTTGAGACA
* *
7885696 GTTTCTCTTGAAACAA-TTTTCGTCTATCTTGAGACA
1 GTTTCTCTTGAAACAAGATTT-GTCTCTCTTGAGACA
*
7885732 GTTTCCCTTGAAACAA
1 GTTTCTCTTGAAACAA
7885748 AATCTTTGAA
Statistics
Matches: 241, Mismatches: 36, Indels: 40
0.76 0.11 0.13
Matches are distributed among these distances:
28 3 0.01
29 18 0.07
30 2 0.01
34 7 0.03
35 29 0.12
36 140 0.58
37 39 0.16
38 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (36 bp):
GTTTCTCTTGAAACAAGATTTGTCTCTCTTGAGACA
Found at i:7885569 original size:72 final size:71
Alignment explanation
Indices: 7885468--7885748 Score: 308
Period size: 72 Copynumber: 4.0 Consensus size: 71
7885458 CTAGAAGAGT
* *
7885468 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGA
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
7885533 AACAAA
66 AACAAA
* *
7885539 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 TTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
7885604 AAACAAA
65 AAACAAA
* * * * * * **
7885611 -----ATAT-TTGA-ATATGTTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTG
1 TTTGTCTATCTTGAGACA-GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
7885669 GAACTAAGT
65 AAAC-AA-A
* * *
7885678 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTG
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTT-GTCTCTCTTGAGACAGTTTCCCTTG
7885742 AAACAAA
65 AAACAAA
7885749 ATCTTTGAAT
Statistics
Matches: 169, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
64 2 0.01
65 45 0.27
66 5 0.03
71 3 0.02
72 73 0.43
73 39 0.23
74 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.40
Consensus pattern (71 bp):
TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
AACAAA
Found at i:7885740 original size:138 final size:137
Alignment explanation
Indices: 7885487--7885811 Score: 463
Period size: 138 Copynumber: 2.4 Consensus size: 137
7885477 CTTGAGACAG
*
7885487 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
* *
7885552 GAGACAGTTTCCCTTGAAATAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAACAAGTTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTT
*
7885617 GAATATG
131 GAATATA
* * * * * * * *
7885624 TTTTCTTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCGTCTATCT
* *
7885689 TGAGACAGTTTCTCTTGAAACAA-TTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCT
65 TGAGACAGTTTCCCTTGAAACAAGTTTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAAATAT
*
7885753 TTGAATTTA
129 TTGAATATA
* * *
7885762 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
7885812 CAAAATCTTC
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
137 48 0.29
138 115 0.71
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCGTCTATCTT
GAGACAGTTTCCCTTGAAACAAGTTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATATTT
GAATATA
Found at i:7885810 original size:65 final size:65
Alignment explanation
Indices: 7885706--7885880 Score: 217
Period size: 67 Copynumber: 2.6 Consensus size: 65
7885696 GTTTCTCTTG
** * **
7885706 AAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTTATTTCCCCT
1 AAACAAATTTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCT
7885770 A
65 A
* *
7885771 AAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG-AA-ACAAAATCTTCAAATTTATTTCCCC
7885836 TA
64 TA
* * *
7885838 AAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACAA
1 AAACA-AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAA
7885881 CATATATCTT
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
65 25 0.26
66 12 0.13
67 31 0.33
68 27 0.28
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (65 bp):
AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCTA
Found at i:7885840 original size:67 final size:67
Alignment explanation
Indices: 7885697--7885879 Score: 219
Period size: 68 Copynumber: 2.7 Consensus size: 67
7885687 CTTGAGACAG
* * ** * **
7885697 TTTCTCTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAAT
1 TTTCCCTTAAAACAAATTTT-GTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAAT
7885759 TTA
65 TTA
* *
7885762 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATT
1 TTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATT
7885827 TA
66 TA
* * *
7885829 TTTCCCTTAAAACATAATTTTGTTTCCCTTGAGACCGTTTCTCATGAAACA
1 TTTCCCTTAAAACA-AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
7885880 ACATATATCT
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
65 31 0.31
66 8 0.08
67 29 0.29
68 32 0.32
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (67 bp):
TTTCCCTTAAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATT
TA
Found at i:7886714 original size:105 final size:105
Alignment explanation
Indices: 7886483--7887143 Score: 938
Period size: 105 Copynumber: 6.3 Consensus size: 105
7886473 GCCATCCGCG
* * * * * *
7886483 ATTTCAACTCCACGACGGAGGATATCGTGGCACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* *
7886548 GGGACGGCTAG-TTGTCAACAAACAACTTCTCAATTTCAGAGCCA
63 GGGACCGCT-GCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
7886592 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
7886657 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* *
7886697 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGATGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
7886762 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
*
7886802 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
7886867 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
7886907 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * ***
7886972 ACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAAATTTA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
* * * *
7887007 ATTTCAACTTCACAACGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * ** *
7887072 ACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCA
66 ACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAGAGCCA
* * *
7887113 ATTTCAACTTCACGACGGAGAATATTGGACT
1 ATTTCAACTTCACAACGAAGGATATTGGACT
7887144 TGGAACAATG
Statistics
Matches: 507, Mismatches: 38, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
100 80 0.16
101 3 0.01
102 3 0.01
103 4 0.01
104 3 0.01
105 310 0.61
106 79 0.16
107 3 0.01
109 22 0.04
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGAGCCA
Found at i:7887739 original size:34 final size:35
Alignment explanation
Indices: 7887693--7887790 Score: 128
Period size: 34 Copynumber: 2.8 Consensus size: 35
7887683 TCGTCCTACT
*
7887693 AGGATTCGAACTCCTAAAAATAGGATATAA-TT-TC
1 AGGATTCAAACTCCTAAAAATAGGATA-AATTTGTC
*
7887727 AGGATTCAAACTCCTAAAAATAGGATGAAATTTTGTT
1 AGGATTCAAACTCCTAAAAATAGGAT-AAA-TTTGTC
*
7887764 AGGATTCAAACTCCTAAAAATATGATA
1 AGGATTCAAACTCCTAAAAATAGGATA
7887791 GAGTTCTACT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
34 27 0.47
35 1 0.02
36 3 0.05
37 26 0.46
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (35 bp):
AGGATTCAAACTCCTAAAAATAGGATAAATTTGTC
Found at i:7888537 original size:5 final size:4
Alignment explanation
Indices: 7888509--7888593 Score: 63
Period size: 4 Copynumber: 20.8 Consensus size: 4
7888499 TTTTCTATAC
*
7888509 TTTA TTTA TTTA TTTA TTTA -TTA TATTA TTTTA TTTTA TTT- CTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA -TTTA -TTTA TTTA TTTA TTTA
7888557 TTT- TGGTTGAA TTTA TTTA TTTA TTT- TTTA TTTA TTT
1 TTTA T--TT--A TTTA TTTA TTTA TTTA TTTA TTTA TTT
7888594 TTTTTATATC
Statistics
Matches: 69, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
3 11 0.16
4 41 0.59
5 13 0.19
6 3 0.04
8 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:7888598 original size:15 final size:15
Alignment explanation
Indices: 7888509--7888598 Score: 64
Period size: 15 Copynumber: 5.9 Consensus size: 15
7888499 TTTTCTATAC
7888509 TTTATTTATTTATTTA
1 TTTATTTATTT-TTTA
7888525 TTTATTATATTATTTTA
1 TTTATT-TATT-TTTTA
*
7888542 TTTTATTT-CTTTTTA
1 -TTTATTTATTTTTTA
*
7888557 TTT-TGGTTGA--ATTTA
1 TTTAT--TT-ATTTTTTA
7888572 TTTATTTATTTTTTA
1 TTTATTTATTTTTTA
7888587 TTTATTT-TTTTT
1 TTTATTTATTTTT
7888599 ATATCTAACA
Statistics
Matches: 61, Mismatches: 3, Indels: 22
0.71 0.03 0.26
Matches are distributed among these distances:
13 2 0.03
14 10 0.16
15 25 0.41
16 8 0.13
17 9 0.15
18 7 0.11
ACGTcount: A:0.20, C:0.01, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTATTTATTTTTTA
Found at i:7899393 original size:20 final size:20
Alignment explanation
Indices: 7899368--7899413 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7899358 CCATAAGTGG
**
7899368 GTATCGATACTCAGGGTTCA
1 GTATCGATACTCAAAGTTCA
*
7899388 GTATCGATACTGAAAGTTCA
1 GTATCGATACTCAAAGTTCA
7899408 GTATCG
1 GTATCG
7899414 GTACCAACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (20 bp):
GTATCGATACTCAAAGTTCA
Found at i:7908083 original size:58 final size:60
Alignment explanation
Indices: 7908011--7908131 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 60
7908001 AATTGTTTCC
* * * * *
7908011 CATTCTAAATTAGT-CTCTAAACTTTTAAACATTCCAATTTCAT-CCTAAGCTATGGCTTT
1 CATTCTAAATTAGTCCT-TAAACTTGTAAACATTCCAATTCCATCCCCAAACTATGACTTT
* *
7908070 CATTCT-AATTAGTCCTTAAACTTGTGAACATTTCAATTCCATCCCCAAACTATGACTTT
1 CATTCTAAATTAGTCCTTAAACTTGTAAACATTCCAATTCCATCCCCAAACTATGACTTT
7908129 CAT
1 CAT
7908132 CGCAAACTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
58 29 0.55
59 24 0.45
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (60 bp):
CATTCTAAATTAGTCCTTAAACTTGTAAACATTCCAATTCCATCCCCAAACTATGACTTT
Found at i:7909906 original size:204 final size:202
Alignment explanation
Indices: 7909505--7909911 Score: 796
Period size: 204 Copynumber: 2.0 Consensus size: 202
7909495 TCGGATTGCT
7909505 AGATGTACTTGCTGCTAGTTTGTACCTCCAATCCATCCAACTTTTAGGACATTGTAAATTAAACC
1 AGATGTACTTGCTGCTAGTTTGTACCTCCAATCCATCCAACTTTTAGGACATTGTAAATTAAACC
7909570 GTAAAAATTATAATTAAGTCACTCTTTTATAATATGAATTACATAGCATTAAGATTTATATAATT
66 GTAAAAATTATAATTAAGTCACTCTTTTATAATATGAATTACATAGCATTAAGATTTATATAATT
7909635 ATAAAAATATTTAATTACAATCATTATACGATAAAATACTGTAGCACAATAAAGCTAAAATACAC
131 ATAAAAATATTTAATTACAATCATTATACGATAAAATACTGTAGCACAATAAAGCTAAAATACAC
7909700 AAATCGC
196 AAATCGC
7909707 AGATGTACTTGCTGCTAGTTTGTACCTCCAATCCATCCAACTTTTAGGACATTGTAAATTAAACC
1 AGATGTACTTGCTGCTAGTTTGTACCTCCAATCCATCCAACTTTTAGGACATTGTAAATTAAACC
7909772 GTAAAAAATTATAATTAAGTCACTCTTTTATAATATGAATTACATAGCATTAAGATTTATATAAA
66 GT-AAAAATTATAATTAAGTCACTCTTTTATAATATGAATTACATAGCATTAAGATTTATAT-AA
7909837 TTATAAAAATATTTAATTACAATCATTATACGATAAAATACTGTAGCACAATAAAGCTAAAATAC
129 TTATAAAAATATTTAATTACAATCATTATACGATAAAATACTGTAGCACAATAAAGCTAAAATAC
7909902 ACAAATCGC
194 ACAAATCGC
7909911 A
1 A
7909912 ATGCCGGGAA
Statistics
Matches: 203, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
202 67 0.33
203 59 0.29
204 77 0.38
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.33
Consensus pattern (202 bp):
AGATGTACTTGCTGCTAGTTTGTACCTCCAATCCATCCAACTTTTAGGACATTGTAAATTAAACC
GTAAAAATTATAATTAAGTCACTCTTTTATAATATGAATTACATAGCATTAAGATTTATATAATT
ATAAAAATATTTAATTACAATCATTATACGATAAAATACTGTAGCACAATAAAGCTAAAATACAC
AAATCGC
Found at i:7910942 original size:30 final size:30
Alignment explanation
Indices: 7910906--7910962 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
7910896 GGGTACGGTG
7910906 TCAACCATTTTCCCTTTACCTTTATCAGTA
1 TCAACCATTTTCCCTTTACCTTTATCAGTA
*
7910936 TCAACCATTTTCCCTTTCCCTTTATCA
1 TCAACCATTTTCCCTTTACCTTTATCA
7910963 TTCCTGCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.33, G:0.02, T:0.44
Consensus pattern (30 bp):
TCAACCATTTTCCCTTTACCTTTATCAGTA
Found at i:7911823 original size:55 final size:55
Alignment explanation
Indices: 7911739--7911849 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
7911729 TTAGAGGTTG
7911739 ACAGCTAAGTGGTCTTCAGCAAGGTCGGTACCAGCCTTATGTGGATATCCACCTT
1 ACAGCTAAGTGGTCTTCAGCAAGGTCGGTACCAGCCTTATGTGGATATCCACCTT
7911794 ACAGCTAAGTGGTCTTCAGCAAGGTCGGTACCAGCCTTATGTGGATATCCACCTT
1 ACAGCTAAGTGGTCTTCAGCAAGGTCGGTACCAGCCTTATGTGGATATCCACCTT
7911849 A
1 A
7911850 GCCTATATTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (55 bp):
ACAGCTAAGTGGTCTTCAGCAAGGTCGGTACCAGCCTTATGTGGATATCCACCTT
Found at i:7919454 original size:23 final size:23
Alignment explanation
Indices: 7919427--7919490 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
7919417 ATATATATAT
* * * *
7919427 ATACCCCCCCGATTCCCGGCCCA
1 ATACCCACCCAATACCCGACCCA
*
7919450 ATACCGACCCAATACCCGACCCA
1 ATACCCACCCAATACCCGACCCA
**
7919473 ATACCGTCCCAATACCCG
1 ATACCCACCCAATACCCG
7919491 TTTAAATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.27, C:0.50, G:0.11, T:0.12
Consensus pattern (23 bp):
ATACCCACCCAATACCCGACCCA
Found at i:7919491 original size:12 final size:12
Alignment explanation
Indices: 7919441--7919490 Score: 68
Period size: 11 Copynumber: 4.3 Consensus size: 12
7919431 CCCCCCGATT
*
7919441 CCCGGCCCAATA
1 CCCGACCCAATA
7919453 -CCGACCCAATA
1 CCCGACCCAATA
7919464 CCCGACCCAATA
1 CCCGACCCAATA
*
7919476 -CCGTCCCAATA
1 CCCGACCCAATA
7919487 CCCG
1 CCCG
7919491 TTTAAATAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 20 0.59
12 14 0.41
ACGTcount: A:0.28, C:0.50, G:0.12, T:0.10
Consensus pattern (12 bp):
CCCGACCCAATA
Found at i:7920132 original size:37 final size:37
Alignment explanation
Indices: 7920091--7920209 Score: 114
Period size: 37 Copynumber: 3.2 Consensus size: 37
7920081 GAAATCTTGA
* *
7920091 AAAAATATAAT-GTATATTTATTAGGATTCAAACTCCT
1 AAAAATATAATAGAAT-TTTACTAGGATTCAAACTCCT
* * *
7920128 AAAAATATGATAGAATTTTGCTAGGATTCAAACTCTT
1 AAAAATATAATAGAATTTTACTAGGATTCAAACTCCT
** * * * *
7920165 AAAAATAGGATAGAGTTCTACTATGATTTAAACTCCT
1 AAAAATATAATAGAATTTTACTAGGATTCAAACTCCT
*
7920202 AAAGATAT
1 AAAAATAT
7920210 GATCCACAAG
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
37 64 0.96
38 3 0.04
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (37 bp):
AAAAATATAATAGAATTTTACTAGGATTCAAACTCCT
Found at i:7920750 original size:19 final size:19
Alignment explanation
Indices: 7920722--7920759 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7920712 ATTCATTTGG
*
7920722 TTATTTTTTA-ATACTATAT
1 TTATTATTTATATA-TATAT
7920741 TTATTATTTATATATATAT
1 TTATTATTTATATATATAT
7920760 CTTTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATTATTTATATATATAT
Found at i:7921055 original size:4 final size:4
Alignment explanation
Indices: 7921043--7921090 Score: 62
Period size: 4 Copynumber: 12.0 Consensus size: 4
7921033 GATATATATA
* *
7921043 ATTT CATTT ATTT A-TT ATTT ATTT ATTT ATTT ATTT TTTT ACTT ATTT
1 ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
7921091 TTATTCTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
3 3 0.08
4 31 0.82
5 4 0.11
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:7921103 original size:13 final size:12
Alignment explanation
Indices: 7921061--7921107 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
7921051 TATTTATTAT
* *
7921061 TTATTTATTTAT
1 TTATTTTTTTAC
7921073 TTATTTTTTTAC
1 TTATTTTTTTAC
7921085 TTATTTTTATT-C
1 TTATTTTT-TTAC
7921097 TTCATTTTTTT
1 TT-ATTTTTTT
7921108 CATTTATTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 23 0.74
13 8 0.26
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTTTTTAC
Found at i:7921124 original size:16 final size:15
Alignment explanation
Indices: 7921048--7921123 Score: 50
Period size: 15 Copynumber: 5.0 Consensus size: 15
7921038 ATATAATTTC
* *
7921048 ATTTATTTATTATTT
1 ATTTATTCATTTTTT
*
7921063 ATTTATTTATTTATTT
1 ATTTATTCATTT-TTT
*
7921079 TTTTACTT-A-TTTTT
1 ATTTA-TTCATTTTTT
*
7921093 A-TTCTTCATTTTTTT
1 ATTTATTCA-TTTTTT
7921108 CATTTATTCATTTTTT
1 -ATTTATTCATTTTTT
7921124 CCCTCTAACA
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
12 2 0.04
13 3 0.06
14 3 0.06
15 18 0.37
16 15 0.31
17 8 0.16
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.74
Consensus pattern (15 bp):
ATTTATTCATTTTTT
Found at i:7924060 original size:23 final size:23
Alignment explanation
Indices: 7924034--7924109 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
7924024 TCCAATCAAG
*
7924034 AACAAAAAAGCAAAGAAGCAAAA
1 AACAAAAAAGAAAAGAAGCAAAA
* *
7924057 AACAAATAAA-AAAGAGAATC-AAG
1 AACAAA-AAAGAAA-AGAAGCAAAA
7924080 AACAAAAAAGAAAAGAAGCAAAA
1 AACAAAAAAGAAAAGAAGCAAAA
*
7924103 ATCAAAA
1 AACAAAA
7924110 GAAAAAGGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 8 0.19
23 27 0.63
24 8 0.19
ACGTcount: A:0.74, C:0.11, G:0.12, T:0.04
Consensus pattern (23 bp):
AACAAAAAAGAAAAGAAGCAAAA
Found at i:7924080 original size:46 final size:46
Alignment explanation
Indices: 7924027--7924116 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
7924017 GCGAAGATCC
*
7924027 AATCAAGAACAAAAAAGCAAAGAAGCAAAAAACAAATA-AAAAAGAG
1 AATCAAGAACAAAAAAGAAAAGAAGCAAAAAACAAA-AGAAAAAGAG
*
7924073 AATCAAGAACAAAAAAGAAAAGAAGCAAAAATCAAAAGAAAAAG
1 AATCAAGAACAAAAAAGAAAAGAAGCAAAAAACAAAAGAAAAAG
7924117 GGACAAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 1 0.02
46 40 0.98
ACGTcount: A:0.72, C:0.10, G:0.13, T:0.04
Consensus pattern (46 bp):
AATCAAGAACAAAAAAGAAAAGAAGCAAAAAACAAAAGAAAAAGAG
Found at i:7924109 original size:16 final size:15
Alignment explanation
Indices: 7924031--7924112 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 15
7924021 AGATCCAATC
7924031 AAGAACAAAAAAGC-A
1 AAGAACAAAAAA-CAA
7924046 AAGAAGCAAAAAAC-A
1 AAGAA-CAAAAAACAA
* * *
7924061 AATAA-AAAAGAGAA
1 AAGAACAAAAAACAA
*
7924075 TCAAGAACAAAAAAGAA
1 --AAGAACAAAAAACAA
*
7924092 AAGAAGCAAAAATCAA
1 AAGAA-CAAAAAACAA
7924108 AAGAA
1 AAGAA
7924113 AAAGGGACAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
13 5 0.09
14 1 0.02
15 16 0.30
16 24 0.44
17 8 0.15
ACGTcount: A:0.73, C:0.10, G:0.13, T:0.04
Consensus pattern (15 bp):
AAGAACAAAAAACAA
Found at i:7924752 original size:22 final size:21
Alignment explanation
Indices: 7924719--7924770 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 21
7924709 GCTACCCCAT
7924719 CAAACCGTTGAGCATCAAATGC
1 CAAACC-TTGAGCATCAAATGC
7924741 CAAACCTATGAGCATCAAATGC
1 CAAACCT-TGAGCATCAAATGC
7924763 CAAACCTT
1 CAAACCTT
7924771 TGACCAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.19
Consensus pattern (21 bp):
CAAACCTTGAGCATCAAATGC
Found at i:7925922 original size:106 final size:105
Alignment explanation
Indices: 7925585--7925936 Score: 514
Period size: 102 Copynumber: 3.4 Consensus size: 105
7925575 ATATCACGCC
* * * *
7925585 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACTGCTGGTTGTCAACAATA-ATTTTCC
1 ACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAA-ACAATTTCC
*
7925649 AATTTCGGAGACAATTTCAACTTCACAGCGAAGGATATTGG
65 AATTTCAGAGACAATTTCAACTTCACAGCGAAGGATATTGG
* *
7925690 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTT-C-
1 ACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCA
* * * *
7925753 A-TTCAGAGTCAATTTCAACTTTACAACGAAGAATATTGG
66 ATTTCAGAGACAATTTCAACTTCACAGCGAAGGATATTGG
*
7925792 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTT-CC
* *
7925857 AATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGG
65 AATTTCAGAGACAATTTCAACTTCACAGCGAAGGATATTGG
* *
7925898 ACTCAAGACAACACAAGTTCAACTTCATGATGAAGGGAC
1 ACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGAC
7925937 TGCTTTCAAA
Statistics
Matches: 222, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
102 94 0.42
103 1 0.00
104 3 0.01
105 55 0.25
106 69 0.31
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (105 bp):
ACTCAAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCA
ATTTCAGAGACAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:7926001 original size:43 final size:42
Alignment explanation
Indices: 7925867--7926014 Score: 119
Period size: 43 Copynumber: 3.6 Consensus size: 42
7925857 AATTTCAGAG
* * *
7925867 CCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAA
1 CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAA
* * * * * *
7925909 CACAAGTTCAACTTCA-TGATGAAGG-GACT-G-CTTTCA-A-AG
1 C-CAAGTTCAACTTCACAG-CGAAGGATATTGGAC-TCCAGACAA
*
7925948 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAA
1 CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAA
*
7925990 CGCAAGTTCAACTTCACAACGAAGG
1 C-CAAGTTCAACTTCACAGCGAAGG
7926015 GACCGCTGGT
Statistics
Matches: 78, Mismatches: 18, Indels: 19
0.68 0.16 0.17
Matches are distributed among these distances:
38 18 0.23
39 5 0.06
40 6 0.08
41 5 0.06
42 6 0.08
43 38 0.49
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.22
Consensus pattern (42 bp):
CCAAGTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAA
Found at i:7926014 original size:81 final size:81
Alignment explanation
Indices: 7925859--7926017 Score: 255
Period size: 81 Copynumber: 2.0 Consensus size: 81
7925849 AATTTCCCAA
* *
7925859 TTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACACAAGTTCAACTTC
1 TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTC
** *
7925924 ATGATGAAGGGACTGC
66 ACAACGAAGGGACTGC
* *
7925940 TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
1 TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTC
7926005 ACAACGAAGGGAC
66 ACAACGAAGGGAC
7926018 CGCTGGTTGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.23
Consensus pattern (81 bp):
TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTC
ACAACGAAGGGACTGC
Found at i:7926081 original size:187 final size:187
Alignment explanation
Indices: 7925762--7926123 Score: 598
Period size: 187 Copynumber: 1.9 Consensus size: 187
7925752 CATTCAGAGT
* *
7925762 CAATTTCAACTTTACAACGAAGAATATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAG
1 CAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAACACAAGTTCAACTTCACAACGAAG
* * * *
7925827 GGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGA
66 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* *
7925892 TATTGGACTCAAGACAACACAAGTTCAACTTCATGATGAAGGGACTGCTTTCAAAGC
131 TATTGGACTCAAGACAACACAAGTTAAACTTCATGACGAAGGGACTGCTTTCAAAGC
* * *
7925949 CAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAG
1 CAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAACACAAGTTCAACTTCACAACGAAG
*
7926014 GGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
66 GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
* *
7926079 TATTGGACTCCAGACAACGCAAGTTAAACTTCATGACGAAGGGAC
131 TATTGGACTCAAGACAACACAAGTTAAACTTCATGACGAAGGGAC
7926124 CGCTGGTTGT
Statistics
Matches: 161, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 161 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (187 bp):
CAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAACACAAGTTCAACTTCACAACGAAG
GGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
TATTGGACTCAAGACAACACAAGTTAAACTTCATGACGAAGGGACTGCTTTCAAAGC
Found at i:7926125 original size:106 final size:106
Alignment explanation
Indices: 7925940--7926761 Score: 1185
Period size: 106 Copynumber: 7.8 Consensus size: 106
7925930 AAGGGACTGC
*
7925940 TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* *
7926005 ACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* *
7926046 TTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTAAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* *
7926111 ATGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* * * *
7926152 TTTTAGAGCCAATTTCAACTTCACAGCAAATGATATTGGACTCAAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* * *
7926217 ACGGCGAAGGGACCGCTGGTTATCAATAAACAACTTCCCAA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
*
7926258 TTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* *
7926323 ACGACGAAGGGACCGCTGGTTGTCAACAAATAACTTCTC-A
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* *
7926363 TTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAC-ACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* * * *
7926427 ACGATGAGGGGACCGCTGGTTGTCAATAAACAATTTCCCAA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* * *
7926468 TTTCAGAGCCAATTTCAACTTCACAACGTAGGATATTGGACTCAAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* * *
7926533 ACGACGAAGGGACCGCTGGTTGTCAATAAATACCTTCCCAA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* * * * *
7926574 TTTCAGAGTCAATTTCAACTTCTCAGCGAAGGATCTTGGAC-CCAAGACAACACAAGCTCAACTT
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTT
* * * *
7926638 CACGACGAAGGGGCGGCTGATTGTCAAC-AA-AA-TT-TC-A
65 CACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
* * *
7926675 -TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
* *
7926739 ACAACGAAGGGACGGCTGGTTGT
66 ACGACGAAGGGACCGCTGGTTGT
7926762 TTCAGAGTCA
Statistics
Matches: 646, Mismatches: 66, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
100 78 0.12
101 2 0.00
102 1 0.00
103 2 0.00
104 50 0.08
105 95 0.15
106 418 0.65
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (106 bp):
TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
ACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCAA
Found at i:7926189 original size:293 final size:294
Alignment explanation
Indices: 7925659--7926761 Score: 1339
Period size: 316 Copynumber: 3.6 Consensus size: 294
7925649 AATTTCGGAG
7925659 ACAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
1 ACAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * * *
7925724 GGGACCGCTGGTTGTCAATAAACAA-TT-TCA-TTCAGAGTCAATTTCAACTTTACAACGAAGAA
66 GGGACCGCTGGTTGTCAACAAACAACTTCTCATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
*
7925786 TATTGGACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
131 TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
*
7925851 TTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACACAAGT
196 TTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCAAGT
* * *
7925916 TCAACTTCATGATGAAGGGACTGCTT-TCAA-AG
261 TCAACTTCACGACGAAGGGACTGCTTATCAATAA
* *
7925948 CCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAA
1 ACAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
7926013 GGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG
66 GGGACCGCTGGTTGTCAACAAACAACTTCTC-ATTTCAGAGCCAATTTCAACTTCACAACGAAGG
* * *
7926078 ATATTGGACTCCAGACAACGCAAGTTAAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACA
130 ATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACA
* ** *
7926143 ATTTCCCAATTTTAGAGCCAATTTCAACTTCACAGCAAATGATATTGGACTCAAGACAACGCAAG
195 ATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCAAG
* *
7926208 TTCAACTTCACGGCGAAGGGACCGCTGGTTATCAATAAACAACTTCCCAATTTCA
260 TTCAACTTCACGACGAAGGGA---CT-GCT-T--AT---CAA--T----A----A
7926263 GAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
1 -A--CAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGAC
* *
7926328 GAAGGGACCGCTGGTTGTCAACAAATAACTTCTCATTTTAGAGCCAATTTCAACTTCACAACGAA
63 GAAGGGACCGCTGGTTGTCAACAAACAACTTCTCATTTCAGAGCCAATTTCAACTTCACAACGAA
* *
7926393 GGATATTGGACTCCAGAC-ACGCAAGTTCAACTTCACGATGAGGGGACCGCTGGTTGTCAATAAA
128 GGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAA
*
7926457 CAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGTAGGATATTGGACTCAAGACAACGCA
193 CAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCA
7926522 AGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATACCTTCCCAATTTCAGA
258 AGTTCAACTTCACGACGAAGGGA---C----TG-C--T---TA---T--CAA--T-A-A
* * * * *
7926581 GTCAATTTCAACTTCTCAGCGAAGGATCTTGGAC-CCAAGACAACACAAGCTCAACTTCACGACG
1 -ACAATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTTCACGACG
* * * * *
7926645 AAGGGGCGGCTGATTGTCAAC-AA-AA-TT-TCA-TTCAGAGTCAATTTCAACTTCACAGCGAAG
64 AAGGGACCGCTGGTTGTCAACAAACAACTTCTCATTTCAGAGCCAATTTCAACTTCACAACGAAG
* * * *
7926705 GATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGT
129 GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGT
7926762 TTCAGAGTCA
Statistics
Matches: 713, Mismatches: 58, Indels: 63
0.85 0.07 0.08
Matches are distributed among these distances:
289 87 0.12
290 2 0.00
291 2 0.00
292 1 0.00
293 167 0.23
296 2 0.00
297 2 0.00
298 1 0.00
301 1 0.00
304 3 0.00
311 44 0.06
312 37 0.05
313 2 0.00
314 2 0.00
315 4 0.01
316 200 0.28
317 48 0.07
318 95 0.13
319 1 0.00
320 1 0.00
321 1 0.00
322 2 0.00
324 7 0.01
325 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (294 bp):
ACAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
GGGACCGCTGGTTGTCAACAAACAACTTCTCATTTCAGAGCCAATTTCAACTTCACAACGAAGGA
TATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA
TTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGCAAGT
TCAACTTCACGACGAAGGGACTGCTTATCAATAA
Found at i:7926524 original size:316 final size:315
Alignment explanation
Indices: 7925940--7926909 Score: 1331
Period size: 316 Copynumber: 3.1 Consensus size: 315
7925930 AAGGGACTGC
*
7925940 TTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
*
7926005 ACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCAC
66 ACGACGAAGGGACCGCTGGTTGTCAACAAA-AACTTCTC-ATTTCAGAGCCAATTTCAACTTCAC
* *
7926070 AACGAAGGATATTGGACTCCAGACAACGCAAGTTAAACTTCATGACGAAGGGACCGCTGGTTGTC
129 AACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTC
* * *
7926135 AACAAACAATTTCCCAATTTTAGAGCCAATTTCAACTTCACAGCAAATGATATTGGACTCAAGAC
194 AA-AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGAC
* * *
7926200 AACGCAAGTTCAACTTCACGGCGAAGGGACCGCTGGTTATCAATAAACAACTTCCCAA
258 AACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCCAA
*
7926258 TTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
*
7926323 ACGACGAAGGGACCGCTGGTTGTCAACAAATAACTTCTCATTTTAGAGCCAATTTCAACTTCACA
66 ACGACGAAGGGACCGCTGGTTGTCAACAAA-AACTTCTCATTTCAGAGCCAATTTCAACTTCACA
* *
7926388 ACGAAGGATATTGGACTCCAGAC-ACGCAAGTTCAACTTCACGATGAGGGGACCGCTGGTTGTCA
130 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
7926452 ATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGTAGGATATTGGACTCAAGACA
195 A-AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACA
*
7926517 ACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATACCTTCCCAA
259 ACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCCAA
* * * * *
7926574 TTTCAGAGTCAATTTCAACTTCTCAGCGAAGGATCTTGGAC-CCAAGACAACACAAGCTCAACTT
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTT
* * * *
7926638 CACGACGAAGGGGCGGCTGATTGTCAAC-AAAA-TT-TCA-TTCAGAGTCAATTTCAACTTCACA
65 CACGACGAAGGGACCGCTGGTTGTCAACAAAAACTTCTCATTTCAGAGCCAATTTCAACTTCACA
* * * * *
7926699 GCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTG---
130 ACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCA
* *
7926761 ---------------TTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAA
195 AAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAA
* * * * * **
7926811 CACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCGG
260 CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCCAA
* * *
7926867 TTCCAGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTC
1 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTC
7926910 GGAACAATGC
Statistics
Matches: 596, Mismatches: 53, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
293 129 0.22
294 1 0.00
311 43 0.07
312 36 0.06
313 2 0.00
314 2 0.00
315 4 0.01
316 231 0.39
317 48 0.08
318 100 0.17
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (315 bp):
TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTC
ACGACGAAGGGACCGCTGGTTGTCAACAAAAACTTCTCATTTCAGAGCCAATTTCAACTTCACAA
CGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA
AAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAAC
GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCCAA
Found at i:7926748 original size:43 final size:43
Alignment explanation
Indices: 7926687--7926835 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 43
7926677 CAGAGTCAAT
*
7926687 TTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
* * * * * ** *
7926730 TTCAACTTCACAACGAAGG-GA-CGG-CTGGTTGTTTCAGAGTCAAT
1 TTCAACTTCACAACGAAGGATATTGGACTCG-AG--ACA-ACACAAG
*
7926774 TTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAG
1 TTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
7926817 TTCAACTTCACAACGAAGG
1 TTCAACTTCACAACGAAGG
7926836 GACGGCTGGT
Statistics
Matches: 80, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
40 3 0.04
41 3 0.04
42 1 0.01
43 42 0.52
44 24 0.30
45 1 0.01
46 3 0.04
47 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.21
Consensus pattern (43 bp):
TTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAG
Found at i:7926821 original size:87 final size:87
Alignment explanation
Indices: 7926675--7926848 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
7926665 CAAAATTTCA
7926675 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCA
7926740 CAACGAAGGGACGGCTGGTTGT
66 CAACGAAGGGACGGCTGGTTGT
7926762 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCA
7926827 CAACGAAGGGACGGCTGGTTGT
66 CAACGAAGGGACGGCTGGTTGT
7926849 CAACAAATAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (87 bp):
TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCA
CAACGAAGGGACGGCTGGTTGT
Found at i:7927691 original size:37 final size:37
Alignment explanation
Indices: 7927638--7927742 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
7927628 CATTTTCGTC
*
7927638 CTACTAGGATTCAAACTCCTAAAAATATGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
7927675 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
7927712 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
7927743 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:7928328 original size:2 final size:2
Alignment explanation
Indices: 7928321--7928361 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7928311 GTATTATTAC
7928321 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7928362 TAATTATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7928611 original size:4 final size:4
Alignment explanation
Indices: 7928598--7928686 Score: 56
Period size: 4 Copynumber: 21.2 Consensus size: 4
7928588 TATATTTTAA
7928598 TATT TCATT TATT TATT TATT TATT TATT T-TT CCT-TT TATTT TATT
1 TATT T-ATT TATT TATT TATT TATT TATT TATT --TATT TA-TT TATT
* * * * * *
7928644 TTTT TACT TATT TTTAT TCTT TATT TTTT TCATT TATT CATT T
1 TATT TATT TATT TAT-T TATT TATT TATT T-ATT TATT TATT T
7928687 TTCCCTCTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
3 3 0.04
4 47 0.70
5 17 0.25
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:7928618 original size:25 final size:25
Alignment explanation
Indices: 7928556--7928619 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 25
7928546 GTTATGATTA
*
7928556 TTATTT-TTCTATTTTACTCATTTAT
1 TTATTTATT-TATTTTAATCATTTAT
* * *
7928581 ATATATATATATTTTAAT-ATTTCAT
1 TTATTTATTTATTTTAATCATTT-AT
7928606 TTATTTATTTATTT
1 TTATTTATTTATTT
7928620 ATTTATTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
24 4 0.13
25 25 0.83
26 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (25 bp):
TTATTTATTTATTTTAATCATTTAT
Found at i:7928619 original size:12 final size:12
Alignment explanation
Indices: 7928598--7928686 Score: 56
Period size: 13 Copynumber: 7.1 Consensus size: 12
7928588 TATATTTTAA
7928598 TATTTCATTTATT
1 TATTT-ATTTATT
7928611 TATTTATTTATT
1 TATTTATTTATT
7928623 TATTT-TTCCT-TT
1 TATTTATT--TATT
*
7928635 TATTTTATTTTTT
1 TA-TTTATTTATT
* *
7928648 TACTTATTTTTAT
1 TATTTATTTAT-T
* *
7928661 TCTTTATTTTTT
1 TATTTATTTATT
*
7928673 TCATTTATTCATT
1 T-ATTTATTTATT
7928686 T
1 T
7928687 TTCCCTCTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
11 2 0.03
12 27 0.43
13 32 0.51
14 2 0.03
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (12 bp):
TATTTATTTATT
Found at i:7930567 original size:63 final size:64
Alignment explanation
Indices: 7930482--7930622 Score: 184
Period size: 64 Copynumber: 2.2 Consensus size: 64
7930472 TAATATTCAA
*
7930482 ATTTAAAC--AAATAATATATATTTTAA-TTTGAAATATTCAAAAG-ATATAAACACACTTTACT
1 ATTTAAACTTAAATAATATATATTTTAATTTTGAAATATTCAAAAGTATATAAACA-ACTTTAAT
* **
7930543 ATTTAAACTTAAATAGATAT-TATTTTAATTTTGAAATATTCAAAAGTATATAATCATTTTTAAT
1 ATTTAAACTTAAATA-ATATATATTTTAATTTTGAAATATTCAAAAGTATATAAACAACTTTAAT
*
7930607 ATTTAAATTTAAATAA
1 ATTTAAACTTAAATAA
7930623 ATAATAAATA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
61 8 0.11
63 14 0.20
64 40 0.57
65 8 0.11
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (64 bp):
ATTTAAACTTAAATAATATATATTTTAATTTTGAAATATTCAAAAGTATATAAACAACTTTAAT
Found at i:7936565 original size:19 final size:19
Alignment explanation
Indices: 7936520--7936577 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
7936510 TATATCGATC
* *
7936520 CAAAACGATATACCAGGTAA
1 CAAAATGATAAACC-GGTAA
*
7936540 -AATATGATAAACCGGTAA
1 CAAAATGATAAACCGGTAA
7936558 CAAAATGATAAAACCGGTAA
1 CAAAATGAT-AAACCGGTAA
7936578 ATTTAAAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 5 0.16
19 17 0.53
20 10 0.31
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (19 bp):
CAAAATGATAAACCGGTAA
Found at i:7936720 original size:20 final size:19
Alignment explanation
Indices: 7936697--7936743 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
7936687 CGATATAACA
7936697 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
7936717 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
7936737 GGTAAAA
1 GGTAAAA
7936744 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7936745 original size:17 final size:19
Alignment explanation
Indices: 7936706--7936748 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
7936696 AGGTAAAAAT
7936706 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
7936726 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
7936743 ATGATA
1 ATGATA
7936749 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:7938975 original size:21 final size:21
Alignment explanation
Indices: 7938928--7938992 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7938918 AAGACAATCA
* *
7938928 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
7938950 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
7938970 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
7938991 AG
1 AG
7938993 GCAAGGGGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:7939066 original size:33 final size:33
Alignment explanation
Indices: 7939024--7939089 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7939014 AAATAGATGG
*
7939024 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
7939057 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
7939090 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:7940834 original size:19 final size:19
Alignment explanation
Indices: 7940810--7940858 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
7940800 AATGTAGGGT
7940810 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
7940829 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
7940848 TATTTTTGTAT
1 TAATTTTGTAT
7940859 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:7941370 original size:198 final size:198
Alignment explanation
Indices: 7940977--7941939 Score: 1769
Period size: 198 Copynumber: 4.9 Consensus size: 198
7940967 CAATATGGCC
* * *
7940977 AACAGGGTGCA-CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
7941041 CCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
7941105 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTATTTCCAGAATGAA
7941170 TGGAA
194 TGGAA
7941175 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7941240 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTATAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7941305 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
7941370 GAA
196 GAA
7941373 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7941438 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7941503 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
7941568 GAA
196 GAA
*
7941571 AACAGTGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
7941636 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCTGTACAATTATA-CGGTTTTATGTGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7941700 AATATGTCT-AA-AATGTGTCGACACTAATATAGTTTGTGTCGATATTT-TTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
7941762 GAA
196 GAA
7941765 AACAGGGTGCACCCATAAAGTGTCGATCC-TATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7941829 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* *
7941894 AATATGTCTAAATAATGTGTCGACATTAATAGAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
7941940 CTAATTTAAA
Statistics
Matches: 746, Mismatches: 14, Indels: 12
0.97 0.02 0.02
Matches are distributed among these distances:
193 84 0.11
194 68 0.09
195 38 0.05
196 33 0.04
197 22 0.03
198 368 0.49
199 133 0.18
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTATTTCCAGAATGAATG
GAA
Found at i:7943409 original size:6 final size:6
Alignment explanation
Indices: 7943385--7943473 Score: 61
Period size: 6 Copynumber: 14.3 Consensus size: 6
7943375 AGCGGGCGCA
* * * * * *
7943385 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * *
7943433 GGCGAT GAAGAT GATGACGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GA--A-GAT GAAGAT GAAGAT GAAGAT GA
7943474 TGATCCAAAC
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
6 58 0.91
8 1 0.02
9 5 0.08
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.20
Consensus pattern (6 bp):
GAAGAT
Found at i:7943420 original size:3 final size:3
Alignment explanation
Indices: 7943400--7943477 Score: 66
Period size: 3 Copynumber: 26.0 Consensus size: 3
7943390 TGAAGCTGAC
* * * * * ** *
7943400 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
7943448 GAC GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
7943478 CCAAACAAGT
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:7943439 original size:36 final size:39
Alignment explanation
Indices: 7943388--7943469 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 39
7943378 GGGCGCAGAA
7943388 GATGAAGCTGACGATG-A-A-GATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGATGACGATGATGATGAC
* *
7943424 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGATGACGATGATGATGAC
7943463 GATGAAG
1 GATGAAG
7943470 ATGATGATCC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 15 0.37
37 1 0.02
38 1 0.02
39 24 0.59
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (39 bp):
GATGAAGCTGACGATGAAGATGATGACGATGATGATGAC
Found at i:7943477 original size:12 final size:12
Alignment explanation
Indices: 7943388--7943473 Score: 91
Period size: 12 Copynumber: 6.9 Consensus size: 12
7943378 GGGCGCAGAA
*
7943388 GATGAAGCTGAC
1 GATGAAGATGAC
7943400 GATGAAGATGAC
1 GATGAAGATGAC
*
7943412 GATGATGATGAC
1 GATGAAGATGAC
* *
7943424 GATGAAGCTGGC
1 GATGAAGATGAC
7943436 GATGAAGATGATGAC
1 GATG-A-A-GATGAC
* *
7943451 GATGATGATGAT
1 GATGAAGATGAC
7943463 GATGAAGATGA
1 GATGAAGATGA
7943474 TGATCCAAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
12 50 0.82
13 1 0.02
14 2 0.03
15 8 0.13
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:7943477 original size:18 final size:18
Alignment explanation
Indices: 7943388--7943477 Score: 81
Period size: 18 Copynumber: 4.8 Consensus size: 18
7943378 GGGCGCAGAA
* * *
7943388 GATGAAGCTGACGATGAA
1 GATGAAGATGATGATGAT
* *
7943406 GATGACGATGATGATGAC
1 GATGAAGATGATGATGAT
* *
7943424 GATGAAGCTGGCGATGAAGAT
1 GATGAAGAT---GATGATGAT
*
7943445 GATGACGATGATGATGAT
1 GATGAAGATGATGATGAT
7943463 GATGAAGATGATGAT
1 GATGAAGATGATGAT
7943478 CCAAACAAGT
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
18 43 0.75
21 14 0.25
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.22
Consensus pattern (18 bp):
GATGAAGATGATGATGAT
Found at i:7944607 original size:53 final size:52
Alignment explanation
Indices: 7944538--7944640 Score: 197
Period size: 53 Copynumber: 2.0 Consensus size: 52
7944528 TTATTCCATA
7944538 TTGCTTCTATGTGTACATATACATTTGAGTGTCTATACTTTTTTAATATATAT
1 TTGCTTCTATGTGTACATATACATTTGAGTGTCTATAC-TTTTTAATATATAT
7944591 TTGCTTCTATGTGTACATATACATTTGAGTGTCTATACTTTTTAATATAT
1 TTGCTTCTATGTGTACATATACATTTGAGTGTCTATACTTTTTAATATAT
7944641 TGTAAAGTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 12 0.24
53 38 0.76
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (52 bp):
TTGCTTCTATGTGTACATATACATTTGAGTGTCTATACTTTTTAATATATAT
Found at i:7945307 original size:181 final size:182
Alignment explanation
Indices: 7944989--7945499 Score: 882
Period size: 181 Copynumber: 2.8 Consensus size: 182
7944979 TATATAATAA
* * * *
7944989 ATAGGTAAATTTGCAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTGTACAA-C
1 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACC
7945053 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
66 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
*
7945118 ACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCATAATTATAATGT
131 ACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGT
*
7945170 ATAGATAATTTTGTAATATAACCGGTCTAAATATACCGGTTTTATGCGCGAATAGGTCTACAACC
1 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACC
*
7945235 TATATCGACACTTTTTAACATTGTGTCGGTACTTTATGTCCATATTGGAAG-AAAATGTGTCGAT
66 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
* *
7945299 ACGATTTAAAAAAGTATCGACATTTACACATCGGAACCCAGATTTATAATGT
131 ACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGT
*
7945351 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACC
1 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACC
* * *
7945416 TATCTCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGAT
66 TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
*
7945481 ACCATTTAAAAAAGTGTCG
131 ACGATTTAAAAAAGTGTCG
7945500 GTAATTTTAA
Statistics
Matches: 311, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
181 230 0.74
182 81 0.26
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACC
TATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGAT
ACGATTTAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGT
Found at i:7947977 original size:25 final size:25
Alignment explanation
Indices: 7947943--7948007 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
7947933 TTATCATTAA
7947943 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
7947968 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
7947993 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
7948008 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:7948384 original size:23 final size:23
Alignment explanation
Indices: 7948353--7948416 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7948343 ATAGGTAAAC
*
7948353 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7948376 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7948399 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7948417 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7948423 original size:23 final size:23
Alignment explanation
Indices: 7948353--7948425 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7948343 ATAGGTAAAC
* **
7948353 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7948376 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7948399 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7948422 ATAT
1 ATAT
7948426 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7949124 original size:331 final size:333
Alignment explanation
Indices: 7948467--7949131 Score: 1273
Period size: 331 Copynumber: 2.0 Consensus size: 333
7948457 CCATACTTTT
7948467 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
1 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
7948532 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAA
66 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAA
*
7948597 ATATTATTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
131 ATAATATTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
7948662 TATGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
196 TATGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
*
7948727 AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAATT
261 AAATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAATT
7948792 TGCAATGC
326 TGCAATGC
7948800 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
1 TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
7948865 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTA-TATTAAATTAAAAATTCTAA
66 TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAA
*
7948929 ATAATATTT-TTAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
131 ATAATATTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
7948993 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
196 TA-TGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
7949058 GAAATATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAAT
260 GAAATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAAT
7949122 TTGCAATGC
325 TTGCAATGC
7949131 T
1 T
7949132 ATCGGTATAA
Statistics
Matches: 328, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
331 117 0.36
332 102 0.31
333 109 0.33
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (333 bp):
TCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAT
TATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAATTCTAA
ATAATATTTATAAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAAATTAA
TATGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAG
AAATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATAATGTAATAGGTAAATT
TGCAATGC
Found at i:7949609 original size:2 final size:2
Alignment explanation
Indices: 7949602--7949635 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7949592 ATTTCTAAAT
7949602 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7949636 AAATTGTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7953839 original size:205 final size:205
Alignment explanation
Indices: 7953288--7953898 Score: 1007
Period size: 205 Copynumber: 3.0 Consensus size: 205
7953278 TCTTTTAAGC
* * **
7953288 GTTATCTACATGATTGATCACTTATGTTTGTGTTTTGTCCACTTTTCCTCA-T--TACCAAAAGA
1 GTTAACTACATGATTGATCACTTATGTTTGTGTTTT-TTCACTTTTCCTCACTGATTTCAAAA-A
* * * *
7953350 ACA-TA-ATATATGGTCACTTTCGTTTTTATTTAATTAAAATGTGGTCACTACAGATTAATTGTC
64 ACATTATATATATGGTCACTTTCGTTTTTATTTAATTAAGATGTGGTCACCACAGATTAACTGTT
* * * * *
7953413 ATTAGACCATTAACGATTTGCTAAGCTAGAATGGTAATTAAATAAAATAAAAAATACATCATTTC
129 GTTAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTC
7953478 CACATGGATTGG
194 CACATGGATTGG
7953490 GTTAACTACATGATTGATCACTTATGTTTGTGTTTTTTTCACTTTTCCTCACTGATTTCAAAAAA
1 GTTAACTACATGATTGATCACTTATGTTTGTG-TTTTTTCACTTTTCCTCACTGATTTCAAAAAA
*
7953555 CATTATATATATGGTCACTTTCGTTTTTATTTAATTAAGATGTGGTCACCACAGATTAACTGCTG
65 CATTATATATATGGTCACTTTCGTTTTTATTTAATTAAGATGTGGTCACCACAGATTAACTGTTG
7953620 TTAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTCC
130 TTAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTCC
7953685 ACATGGATTGG
195 ACATGGATTGG
7953696 GTTAACTACATGATTGATCACTTATGTTTGTGTTTTTTCACTTTTCCTCACTGATTTCAAAAAAC
1 GTTAACTACATGATTGATCACTTATGTTTGTGTTTTTTCACTTTTCCTCACTGATTTCAAAAAAC
* *
7953761 ATTATATATATGGTCACATTCGTTTTTATTTAATTAAGATGCGGTCACCACAGATTAACTGTTGT
66 ATTATATATATGGTCACTTTCGTTTTTATTTAATTAAGATGTGGTCACCACAGATTAACTGTTGT
7953826 TAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTCCA
131 TAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTCCA
*
7953891 CATTGATT
196 CATGGATT
7953899 ATACGTGGAT
Statistics
Matches: 385, Mismatches: 18, Indels: 9
0.93 0.04 0.02
Matches are distributed among these distances:
202 44 0.11
203 5 0.01
204 4 0.01
205 175 0.45
206 157 0.41
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (205 bp):
GTTAACTACATGATTGATCACTTATGTTTGTGTTTTTTCACTTTTCCTCACTGATTTCAAAAAAC
ATTATATATATGGTCACTTTCGTTTTTATTTAATTAAGATGTGGTCACCACAGATTAACTGTTGT
TAGACCATTAACGATTTACTAAGCTAGCACGGTAATTAAATAAAATAGAAAATACATCATTTCCA
CATGGATTGG
Found at i:7960204 original size:18 final size:18
Alignment explanation
Indices: 7960181--7960215 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7960171 CAGCTGCCAC
7960181 CGCAGCCATATATGATGT
1 CGCAGCCATATATGATGT
7960199 CGCAGCCATATATGATG
1 CGCAGCCATATATGATG
7960216 CCGCCATCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (18 bp):
CGCAGCCATATATGATGT
Found at i:7964429 original size:49 final size:51
Alignment explanation
Indices: 7964322--7964444 Score: 180
Period size: 49 Copynumber: 2.5 Consensus size: 51
7964312 TTATACAAAA
7964322 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGGTATGT
1 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGGTATGT
* *
7964373 CGCGGTACTTGCCCCGCGCTGTATAAAATTAT-T-AGGAGTAAAGGTATAG-
1 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGGTAT-GT
**
7964422 CGCGGTACCTGATCCGCGCTATA
1 CGCGGTACCTGCCCCGCGCTATA
7964445 CCCCTACGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 33 0.51
50 2 0.03
51 30 0.46
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (51 bp):
CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCAGGAGTAAAGGTATGT
Found at i:7964566 original size:51 final size:50
Alignment explanation
Indices: 7964456--7964580 Score: 151
Period size: 51 Copynumber: 2.5 Consensus size: 50
7964446 CCCTACGTGG
* * * * * *
7964456 CGTATAGCGCGCTGCAGGGGCCGCGCTATACCCACGTGGCGCCAACTCAC
1 CGTATAGCGCGGTGCAGGGGGCGCACTATACCCACGTAGCACCAAATCAC
* * * *
7964506 CATATAGCGCGGTGTAGGGGGTGCACTATACCCCACGTAGCACCAAATCAT
1 CGTATAGCGCGGTGCAGGGGGCGCACTATA-CCCACGTAGCACCAAATCAC
7964557 CGTATAGCGCGGTGCAGGGGGCGC
1 CGTATAGCGCGGTGCAGGGGGCGC
7964581 GCTTTACTGC
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
50 24 0.39
51 37 0.61
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (50 bp):
CGTATAGCGCGGTGCAGGGGGCGCACTATACCCACGTAGCACCAAATCAC
Found at i:7964985 original size:23 final size:23
Alignment explanation
Indices: 7964954--7965018 Score: 60
Period size: 23 Copynumber: 2.9 Consensus size: 23
7964944 ACATTATTAA
*
7964954 GCATA-ATAACATATTAGGTAGC
1 GCATATATAACATAATAGGTAGC
** **
7964976 GTTTATATAATGTAATAGGTAGC
1 GCATATATAACATAATAGGTAGC
* *
7964999 GCATATATAATAAAATAGGT
1 GCATATATAACATAATAGGT
7965019 TAATTACTGG
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
22 3 0.09
23 30 0.91
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (23 bp):
GCATATATAACATAATAGGTAGC
Found at i:7965006 original size:87 final size:87
Alignment explanation
Indices: 7964871--7965093 Score: 347
Period size: 87 Copynumber: 2.6 Consensus size: 87
7964861 TATCAAATAA
* * *
7964871 AATAACAAATTAGATAGCGTTTATATAATGTAATAGGTAGCACTTATATAATAAAATAGATTAAT
1 AATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGATTAAT
* *
7964936 TACTGAAAACATTATTAAGCAT
66 TACTGAAAACATTATCAAGCAC
* *
7964958 AATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCATATATAATAAAATAGGTTAAT
1 AATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGATTAAT
* *
7965023 TACTGGAAATATTATCAAGCAC
66 TACTGAAAACATTATCAAGCAC
* *
7965045 AATAACATATTAGGTAGCGCTTATATAATGTAATAGGCAGCGCTTATAT
1 AATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATAT
7965094 TGACCTATTC
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 124 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (87 bp):
AATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATAAAATAGATTAAT
TACTGAAAACATTATCAAGCAC
Found at i:7965346 original size:20 final size:20
Alignment explanation
Indices: 7965321--7965359 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7965311 CCAGTATATT
*
7965321 TCTACCGGATACATTGTAAA
1 TCTACCGAATACATTGTAAA
*
7965341 TCTACCTAATACATTGTAA
1 TCTACCGAATACATTGTAA
7965360 TTATAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (20 bp):
TCTACCGAATACATTGTAAA
Found at i:7965519 original size:198 final size:198
Alignment explanation
Indices: 7965141--7965772 Score: 830
Period size: 199 Copynumber: 3.2 Consensus size: 198
7965131 GTAACATTAC
* * * * *
7965141 AAATTTACCTATTATATTATAATTATCGGTTTTGATGTTTTTAGGATCGATACAATTT--TAAAT
1 AAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAAT
** *
7965204 GTATTAACACTTTATGCGTGCACCTCGTTAGG-CATTCATTCTGG-AAAAAGTATCGACACAAAC
65 GTATCGACACTTTATGTGTGCACCTCGTT-GGACATTCATTCTGGAAAAAAGTATCGACACAAAC
** *
7965267 TTAAAACATGTTGATATATTATGTAGACCTATTTTCTCATAAAACC-AGTATATTTCTACCGGAT
129 TTAAAATGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCGA-TATATTTCTACC-GAT
7965331 ACATTGT
192 ACATTGT
* * * *
7965338 AAATCTACCTAATACATTGTAATTATAAGTTTCGAT-TTTTTGGGATCGATACTTTTAATAAATG
1 AAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATG
7965402 TATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
66 TATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
*
7965467 AAAATGTGTCGATACATTATGTAGACCTATTTTCTCATAAAACCGATATATTTCTACCGAGTACA
131 AAAATGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCGATATATTTCTACCGA-TACA
7965532 TTGT
195 TTGT
* * **
7965536 AAATTTACCTATTACATTGTAATTATCATTTTCGATGTTTTTGGGAAAGATACTTTTAATAAATG
1 AAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATG
* * * ***
7965601 TATCGACACTTTATGTGTGCACCTCGTTTGACATTCATTATGGACAAAATGTATCGACAC-TTTT
66 TATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGA-AAAAAGTATCGACACAAACT
* * * * * * *
7965665 TAAATTTGTGTCGATATATTATGTAAACCTATTCTCTAAT-AAACCGATATATTTATACTAGTTA
130 TAAA-ATGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCGATATATTTCTAC-CGATA
7965729 CATTGT
193 CATTGT
*
7965735 AAATTTACCTATTACATTATAATTATCGGTTTCGATGT
1 AAATTTACCTATTACATTATAATTATCAGTTTCGATGT
7965773 AACATATGCG
Statistics
Matches: 386, Mismatches: 39, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
195 3 0.01
196 17 0.04
197 74 0.19
198 113 0.29
199 134 0.35
200 45 0.12
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (198 bp):
AAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATG
TATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
AAAATGTGTCGATATATTATGTAGACCTATTTTCTCATAAAACCGATATATTTCTACCGATACAT
TGT
Found at i:7965958 original size:28 final size:31
Alignment explanation
Indices: 7965887--7965959 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 31
7965877 AAATATAATT
7965887 TATAATAATTTTATTTTAATAAAATATGATAA
1 TATAAT-ATTTTATTTTAATAAAATATGATAA
*
7965919 TCATAATTTTTTA-TTT-ATAAAAT-T-ATAGA
1 T-ATAATATTTTATTTTAATAAAATATGATA-A
7965948 TATAATATTTTA
1 TATAATATTTTA
7965960 ATAATAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 13 0.35
29 3 0.08
30 7 0.19
31 3 0.08
32 6 0.16
33 5 0.14
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (31 bp):
TATAATATTTTATTTTAATAAAATATGATAA
Found at i:7965966 original size:14 final size:14
Alignment explanation
Indices: 7965884--7965970 Score: 52
Period size: 14 Copynumber: 6.2 Consensus size: 14
7965874 AATAAATATA
**
7965884 ATTTATAATAATTTT
1 ATTT-TAATAATAAT
7965899 ATTTTAATAA-AAT
1 ATTTTAATAATAAT
** *
7965912 ATGATAATCATAAT
1 ATTTTAATAATAAT
* * * *
7965926 TTTTTATTTATAAA
1 ATTTTAATAATAAT
*
7965940 ATTATAGAT-ATAAT
1 ATTTTA-ATAATAAT
7965954 ATTTTAATAATAAT
1 ATTTTAATAATAAT
7965968 ATT
1 ATT
7965971 GACATAAATA
Statistics
Matches: 53, Mismatches: 16, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
13 10 0.19
14 38 0.72
15 5 0.09
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (14 bp):
ATTTTAATAATAAT
Found at i:7965966 original size:28 final size:28
Alignment explanation
Indices: 7965898--7965966 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
7965888 ATAATAATTT
*
7965898 TATTTTAATAA-AATATGATAATCATAA
1 TATTTTAATAATAAAATGATAATCATAA
* * * *
7965925 TTTTTTATTTATAAAATTATAGAT-ATAA
1 TATTTTAATAATAAAATGATA-ATCATAA
7965953 TATTTTAATAATAA
1 TATTTTAATAATAA
7965967 TATTGACATA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 8 0.25
28 22 0.69
29 2 0.06
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (28 bp):
TATTTTAATAATAAAATGATAATCATAA
Found at i:7966053 original size:24 final size:25
Alignment explanation
Indices: 7965985--7966053 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
7965975 TAAATAATAT
*
7965985 TAAATAA-ATTATTCTAATATT-TTAA
1 TAAATAATATTA-T-TATTATTGTTAA
7966010 -AAATAATATTATTATT-TTGTTAA
1 TAAATAATATTATTATTATTGTTAA
7966033 TAAATAATATTATT-TTATTGT
1 TAAATAATATTATTATTATTGT
7966054 ATTTGATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
22 2 0.05
23 9 0.23
24 24 0.62
25 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (25 bp):
TAAATAATATTATTATTATTGTTAA
Found at i:7966688 original size:33 final size:32
Alignment explanation
Indices: 7966651--7966739 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 32
7966641 TTATCATAAA
7966651 AATAAAAAAT-ATAATTTATAATAATTTTATTTT
1 AATAAAAAATAATAA-TTATAAT-ATTTTATTTT
* *
7966684 AATAAAATATAATAATTATAATTTTTTA-TTT
1 AATAAAAAATAATAATTATAATATTTTATTTT
* *
7966715 -AT--AAAATTATAAATATAATATTTTA
1 AATAAAAAATAATAATTATAATATTTTA
7966740 ATAATAATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
28 19 0.39
30 2 0.04
31 3 0.06
32 5 0.10
33 16 0.33
34 4 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
AATAAAAAATAATAATTATAATATTTTATTTT
Found at i:7966693 original size:31 final size:28
Alignment explanation
Indices: 7966656--7966739 Score: 89
Period size: 31 Copynumber: 2.8 Consensus size: 28
7966646 ATAAAAATAA
7966656 AAAATATAATTTATAATAATTTTATTTTAAT
1 AAAATATAATTTATAAT-ATTTTA-TTT-AT
*
7966687 AAAATATAATAATTATAATTTTTTATTTAT
1 AAAATATAAT--TTATAATATTTTATTTAT
*
7966717 AAAATTATAA-ATATAATATTTTA
1 AAAA-TATAATTTATAATATTTTA
7966740 ATAATAATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
28 11 0.23
30 6 0.13
31 18 0.38
32 5 0.11
33 7 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (28 bp):
AAAATATAATTTATAATATTTTATTTAT
Found at i:7966738 original size:28 final size:32
Alignment explanation
Indices: 7966667--7966739 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 32
7966657 AAATATAATT
*
7966667 TATAATAATTTTATTTTAATAAAATATAATAAT
1 TATAAT-ATTTTATTTTAATAAAATATAATAAA
*
7966700 TATAATTTTTTA-TTT-ATAAAAT-T-ATAAA
1 TATAATATTTTATTTTAATAAAATATAATAAA
7966728 TATAATATTTTA
1 TATAATATTTTA
7966740 ATAATAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 15 0.41
29 1 0.03
30 7 0.19
31 3 0.08
32 5 0.14
33 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (32 bp):
TATAATATTTTATTTTAATAAAATATAATAAA
Found at i:7966746 original size:14 final size:14
Alignment explanation
Indices: 7966664--7966765 Score: 57
Period size: 14 Copynumber: 7.2 Consensus size: 14
7966654 AAAAAATATA
**
7966664 ATTTATAATAATTTT
1 ATTT-TAATAATAAT
7966679 ATTTTAATAA-AAT
1 ATTTTAATAATAAT
** *
7966692 ATAATAATTATAAT
1 ATTTTAATAATAAT
* * * *
7966706 TTTTTATTTATAAA
1 ATTTTAATAATAAT
*
7966720 ATTATAA-ATATAAT
1 ATTTTAATA-ATAAT
7966734 ATTTTAATAATAAT
1 ATTTTAATAATAAT
7966748 A-TTTACATAAATAAT
1 ATTTTA-AT-AATAAT
7966763 ATT
1 ATT
7966766 AAATAAATTA
Statistics
Matches: 65, Mismatches: 16, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
13 12 0.18
14 40 0.62
15 12 0.18
16 1 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTAATAATAAT
Found at i:7966746 original size:28 final size:28
Alignment explanation
Indices: 7966678--7966746 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
7966668 ATAATAATTT
* *
7966678 TATTTTAATAA-AATATAATAATTATAA
1 TATTTTAATAATAAAATAATAAATATAA
* * * *
7966705 TTTTTTATTTATAAAATTATAAATATAA
1 TATTTTAATAATAAAATAATAAATATAA
7966733 TATTTTAATAATAA
1 TATTTTAATAATAA
7966747 TATTTACATA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (28 bp):
TATTTTAATAATAAAATAATAAATATAA
Found at i:7966771 original size:14 final size:15
Alignment explanation
Indices: 7966729--7966773 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
7966719 AATTATAAAT
*
7966729 ATAATATTTTAAT-A
1 ATAATATTTAAATAA
*
7966743 ATAATATTTACATAA
1 ATAATATTTAAATAA
7966758 ATAATA-TTAAATAA
1 ATAATATTTAAATAA
7966772 AT
1 AT
7966774 TATTCTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATTTAAATAA
Found at i:7966833 original size:24 final size:24
Alignment explanation
Indices: 7966782--7966833 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
7966772 ATTATTCTAA
7966782 TATT-TTAAAAATAATATTATTAT
1 TATTGTTAAAAATAATATTATTAT
*
7966805 T-TTGTTAATAAATAATATTGTT-T
1 TATTGTTAA-AAATAATATTATTAT
7966828 TATTGT
1 TATTGT
7966834 ATTTGATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 2 0.08
23 7 0.28
24 16 0.64
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (24 bp):
TATTGTTAAAAATAATATTATTAT
Found at i:7967114 original size:23 final size:23
Alignment explanation
Indices: 7967088--7967137 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
7967078 ATCTATTTTA
*
7967088 TTATATAAGCACTACCTATTACG
1 TTATATAAGCACTACCTAATACG
* *
7967111 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCACTACCTAATACG
7967134 TTAT
1 TTAT
7967138 TGTGCTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (23 bp):
TTATATAAGCACTACCTAATACG
Found at i:7967218 original size:87 final size:87
Alignment explanation
Indices: 7967072--7967271 Score: 310
Period size: 87 Copynumber: 2.3 Consensus size: 87
7967062 ACAAATTAAA
* * *
7967072 TAATTAATCTATTTTATTATATAAGCACTACCTATTACGTTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGTACTACCTATTACATTATATAAGCGCTACCTAATATGTTA
* *
7967137 TTGTGCTTGATAATATTTCTAG
66 TTATGCTTGATAATATTTCCAG
* *
7967159 TAATTAACCTATTTTATTATATAAGTTCTACCTATTACATTATATAAGCGGTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGTACTACCTATTACATTATATAAGCGCTACCTAATATGTTA
* *
7967224 TTATGTTTGATAATGTTTCCAG
66 TTATGCTTGATAATATTTCCAG
*
7967246 TAATTAACATATTTTATTATATAAGT
1 TAATTAACCTATTTTATTATATAAGT
7967272 GGTACCTAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 103 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.45
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGTACTACCTATTACATTATATAAGCGCTACCTAATATGTTA
TTATGCTTGATAATATTTCCAG
Found at i:7967270 original size:64 final size:64
Alignment explanation
Indices: 7967197--7967336 Score: 219
Period size: 64 Copynumber: 2.2 Consensus size: 64
7967187 TACCTATTAC
*
7967197 ATTATATAAGCGGTACCTAATATGTTATTATG-TTTGATAATGTTTCCAGTAATTAACATATTTT
1 ATTATATAAGCGGTACCTAATATGTTATTATGCATT-ATAATGTTTCCAGTAATTAACATATTTT
* * * *
7967261 ATTATATAAGTGGTACCTAATATGTTATTGTGCATTATAATGTTTCTAGTAATTAACCTATTTT
1 ATTATATAAGCGGTACCTAATATGTTATTATGCATTATAATGTTTCCAGTAATTAACATATTTT
7967325 ATTATATAAGCG
1 ATTATATAAGCG
7967337 CTAACTATTA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
64 67 0.97
65 2 0.03
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (64 bp):
ATTATATAAGCGGTACCTAATATGTTATTATGCATTATAATGTTTCCAGTAATTAACATATTTT
Found at i:7967469 original size:62 final size:62
Alignment explanation
Indices: 7967392--7967516 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
7967382 ATCCTTTTTA
*
7967392 TAAAAATGATCGATACTTTCAACATATCAGGTAACATTATGATAAAACCGATAAAATTTACC
1 TAAAAAGGATCGATACTTTCAACATATCAGGTAACATTATGATAAAACCGATAAAATTTACC
*
7967454 TAAAAAGGATCGATACTTTCAACATATCAGGTAACATTATGATAAAACCGGTAAAATTTACC
1 TAAAAAGGATCGATACTTTCAACATATCAGGTAACATTATGATAAAACCGATAAAATTTACC
7967516 T
1 T
7967517 GATATGTTGA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (62 bp):
TAAAAAGGATCGATACTTTCAACATATCAGGTAACATTATGATAAAACCGATAAAATTTACC
Found at i:7970818 original size:16 final size:16
Alignment explanation
Indices: 7970797--7970849 Score: 106
Period size: 16 Copynumber: 3.3 Consensus size: 16
7970787 GATGGTGCTG
7970797 TGTCGGTGAACGTCTC
1 TGTCGGTGAACGTCTC
7970813 TGTCGGTGAACGTCTC
1 TGTCGGTGAACGTCTC
7970829 TGTCGGTGAACGTCTC
1 TGTCGGTGAACGTCTC
7970845 TGTCG
1 TGTCG
7970850 ACGTCGTGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (16 bp):
TGTCGGTGAACGTCTC
Found at i:7972443 original size:9 final size:9
Alignment explanation
Indices: 7972429--7972462 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7972419 TAAGTAAAAT
7972429 ATTAAATAA
1 ATTAAATAA
7972438 ATTAAAT-A
1 ATTAAATAA
*
7972446 CTTAAATAA
1 ATTAAATAA
7972455 ATTAAATA
1 ATTAAATA
7972463 CAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:7972461 original size:17 final size:17
Alignment explanation
Indices: 7972425--7972463 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
7972415 TATATAAGTA
7972425 AAATA-TTAAATAAATT
1 AAATACTTAAATAAATT
7972441 AAATACTTAAATAAATT
1 AAATACTTAAATAAATT
7972458 AAATAC
1 AAATAC
7972464 AAAATATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATACTTAAATAAATT
Found at i:7973622 original size:30 final size:31
Alignment explanation
Indices: 7973582--7973652 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
7973572 AGAATATAAT
* *
7973582 ATATGATCACTTTTATTTTTA-TTAATTAAG
1 ATATGGTCACTTTCATTTTTATTTAATTAAG
*
7973612 ATATGGTCACTTTCGTTTTTATTTAATTAAG
1 ATATGGTCACTTTCATTTTTATTTAATTAAG
*
7973643 ATATTGTCAC
1 ATATGGTCAC
7973653 CATGAGTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 18 0.50
31 18 0.50
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (31 bp):
ATATGGTCACTTTCATTTTTATTTAATTAAG
Found at i:7981629 original size:14 final size:15
Alignment explanation
Indices: 7981603--7981631 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7981593 ATAAATACGG
7981603 GTAAAACTAAACTAA
1 GTAAAACTAAACTAA
7981618 GTAAAA-TAAACTAA
1 GTAAAACTAAACTAA
7981632 AATAGTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (15 bp):
GTAAAACTAAACTAA
Found at i:7985582 original size:28 final size:28
Alignment explanation
Indices: 7985542--7985598 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
7985532 TAACTCGTTC
7985542 TCATTTCCATTGAGGAATAGAGATAGGT
1 TCATTTCCATTGAGGAATAGAGATAGGT
7985570 TCATTTCCATTGAGGAATAGAGATAGGT
1 TCATTTCCATTGAGGAATAGAGATAGGT
7985598 T
1 T
7985599 GTAATAATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
TCATTTCCATTGAGGAATAGAGATAGGT
Found at i:7989581 original size:14 final size:15
Alignment explanation
Indices: 7989555--7989583 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7989545 ATAAATACGG
7989555 GTAAAACTAAACTAA
1 GTAAAACTAAACTAA
7989570 GTAAAA-TAAACTAA
1 GTAAAACTAAACTAA
7989584 AATAGTTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (15 bp):
GTAAAACTAAACTAA
Found at i:7997622 original size:17 final size:19
Alignment explanation
Indices: 7997602--7997636 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
7997592 TCTCCGGGAA
7997602 TTTAAAA-AAAA-ACTTTG
1 TTTAAAACAAAATACTTTG
7997619 TTTAAAACAAAATACTTT
1 TTTAAAACAAAATACTTT
7997637 AATTTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.37
Consensus pattern (19 bp):
TTTAAAACAAAATACTTTG
Found at i:7997983 original size:22 final size:22
Alignment explanation
Indices: 7997943--7997984 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7997933 GCATATATAT
*
7997943 ATATATATATATATTTCATGAC
1 ATATATATATATATGTCATGAC
7997965 ATATATATA-ATCATGTCATG
1 ATATATATATAT-ATGTCATG
7997985 CACACATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (22 bp):
ATATATATATATATGTCATGAC
Found at i:7998520 original size:14 final size:15
Alignment explanation
Indices: 7998493--7998521 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7998483 ATCATATATA
7998493 TCTTATGTTTTATGC
1 TCTTATGTTTTATGC
7998508 TCTTATG-TTTATGC
1 TCTTATGTTTTATGC
7998522 ATATCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (15 bp):
TCTTATGTTTTATGC
Found at i:7998904 original size:19 final size:20
Alignment explanation
Indices: 7998868--7998905 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7998858 TTTCATTTAG
7998868 GGGGGAATCGATATCCCCCA
1 GGGGGAATCGATATCCCCCA
7998888 GGGGGAATCGATA-CCCCC
1 GGGGGAATCGATATCCCCC
7998906 TGGACATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.13
Consensus pattern (20 bp):
GGGGGAATCGATATCCCCCA
Found at i:8001878 original size:17 final size:19
Alignment explanation
Indices: 8001858--8001892 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
8001848 TCCCCGGGAA
8001858 TTTAAAA-AAAA-ACTTTG
1 TTTAAAACAAAATACTTTG
8001875 TTTAAAACAAAATACTTT
1 TTTAAAACAAAATACTTT
8001893 AATTTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.51, C:0.09, G:0.03, T:0.37
Consensus pattern (19 bp):
TTTAAAACAAAATACTTTG
Done.