Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 41 of 55
Found at i:8215034 original size:22 final size:20
Alignment explanation
Indices: 8214984--8215062 Score: 90
Period size: 22 Copynumber: 3.8 Consensus size: 20
8214974 AGAATGCTCG
8214984 AATGGTATCGATACCCCC-C
1 AATGGTATCGATACCCCCTC
8215003 -ATAGGTATCGATACCCCCATGC
1 AAT-GGTATCGATACCCCC-T-C
8215025 AATGGTATCGATACCCCTCTC
1 AATGGTATCGATACCCC-CTC
*
8215046 AGATGGTACCGATACCC
1 A-ATGGTATCGATACCC
8215063 TAAGGCATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 11
0.81 0.02 0.17
Matches are distributed among these distances:
18 2 0.04
19 15 0.29
21 2 0.04
22 30 0.58
23 3 0.06
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.23
Consensus pattern (20 bp):
AATGGTATCGATACCCCCTC
Found at i:8218084 original size:21 final size:21
Alignment explanation
Indices: 8218058--8218100 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8218048 TCACAGACTC
*
8218058 AGTGAGATATGAAATGAACAT
1 AGTGAGATATAAAATGAACAT
*
8218079 AGTGAGGTATAAAATGAACAT
1 AGTGAGATATAAAATGAACAT
8218100 A
1 A
8218101 TAACAATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.23, T:0.23
Consensus pattern (21 bp):
AGTGAGATATAAAATGAACAT
Found at i:8230041 original size:23 final size:23
Alignment explanation
Indices: 8229997--8230041 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
8229987 GTTTGTTAAA
* *
8229997 CGTTCATGAACATGTTTATTTAG
1 CGTTCACGAACATGTCTATTTAG
* *
8230020 CGTTCACGAATATGTCTGTTTA
1 CGTTCACGAACATGTCTATTTA
8230042 TATGTTCACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (23 bp):
CGTTCACGAACATGTCTATTTAG
Found at i:8230055 original size:24 final size:22
Alignment explanation
Indices: 8230021--8230092 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 22
8230011 TTTATTTAGC
*
8230021 GTTCACGAATATGTCTGTTTATAT
1 GTTCACAAATAT-T-TGTTTATAT
8230045 GTTCACAAATATATTTGTTTA-AT
1 GTTCAC-AA-ATATTTGTTTATAT
*
8230068 GTTAACGAACATATTTGTTTATAT
1 GTTCAC-AA-ATATTTGTTTATAT
8230092 G
1 G
8230093 CTCGTCAACG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 20 0.49
24 15 0.37
25 2 0.05
26 4 0.10
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.46
Consensus pattern (22 bp):
GTTCACAAATATTTGTTTATAT
Found at i:8230081 original size:23 final size:24
Alignment explanation
Indices: 8230036--8230092 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
8230026 CGAATATGTC
* *
8230036 TGTTTATATGTTCACAAATATATT
1 TGTTTATATGTTAACAAACATATT
*
8230060 TGTTTA-ATGTTAACGAACATATT
1 TGTTTATATGTTAACAAACATATT
8230083 TGTTTATATG
1 TGTTTATATG
8230093 CTCGTCAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (24 bp):
TGTTTATATGTTAACAAACATATT
Found at i:8230804 original size:13 final size:13
Alignment explanation
Indices: 8230786--8230811 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8230776 TATTTCGATC
8230786 ATAAAGATCATTA
1 ATAAAGATCATTA
8230799 ATAAAGATCATTA
1 ATAAAGATCATTA
8230812 TCTGATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
ATAAAGATCATTA
Found at i:8232536 original size:37 final size:36
Alignment explanation
Indices: 8232461--8232536 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
8232451 TTTTTATATT
*
8232461 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
8232497 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
8232534 TTT
1 TTT
8232537 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:8232720 original size:20 final size:20
Alignment explanation
Indices: 8232684--8232721 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8232674 ATCATATTCT
**
8232684 CTGATAATCTTTTATTCCCA
1 CTGATAATCTTACATTCCCA
8232704 CTGATAATCTTACATTCC
1 CTGATAATCTTACATTCC
8232722 GTGAACCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (20 bp):
CTGATAATCTTACATTCCCA
Found at i:8234235 original size:30 final size:31
Alignment explanation
Indices: 8234174--8234244 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
8234164 AAGTTTTAAA
* * *
8234174 TGTAACAAATTAGTCACTAAAATTATTGATT
1 TGTAACAAAATGGTCACTAAAATTATCGATT
* **
8234205 T-TAATAAAATGGTCACTAATGTTATCGATT
1 TGTAACAAAATGGTCACTAAAATTATCGATT
8234235 TGTAACAAAA
1 TGTAACAAAA
8234245 CGGTGACTCC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (31 bp):
TGTAACAAAATGGTCACTAAAATTATCGATT
Found at i:8235778 original size:29 final size:29
Alignment explanation
Indices: 8235736--8235794 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8235726 ATTTTCACCT
8235736 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
8235765 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
8235794 A
1 A
8235795 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:8240463 original size:29 final size:29
Alignment explanation
Indices: 8240421--8240479 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8240411 ATTTTCACCT
8240421 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
8240450 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
8240479 A
1 A
8240480 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:8243588 original size:22 final size:22
Alignment explanation
Indices: 8243563--8243605 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8243553 TACAATATTT
*
8243563 AATC-GAAATTAATTGATTAATA
1 AATCAGAAATCAA-TGATTAATA
*
8243585 AATCAGATATCAATGATTAAT
1 AATCAGAAATCAATGATTAAT
8243606 TCAAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (22 bp):
AATCAGAAATCAATGATTAATA
Found at i:8257500 original size:20 final size:19
Alignment explanation
Indices: 8257472--8257519 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
8257462 TACTGTTCAT
* * *
8257472 TACTGTTCACACAGTATCG
1 TACTATTCACACAATATAG
*
8257491 ATACTATTCATACAATATAG
1 -TACTATTCACACAATATAG
8257511 TACTATTCA
1 TACTATTCA
8257520 TAAAAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (19 bp):
TACTATTCACACAATATAG
Found at i:8258726 original size:2 final size:2
Alignment explanation
Indices: 8258719--8258748 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8258709 AAAATTCTAA
*
8258719 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8258749 TTGAGACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8260850 original size:13 final size:13
Alignment explanation
Indices: 8260812--8260853 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
8260802 ATTCTCTTTA
*
8260812 TTTTTTATAATGAT
1 TTTTTTAT-ATTAT
8260826 TTTTTTATTATTAT
1 TTTTTTA-TATTAT
8260840 TTTTTTATATTAT
1 TTTTTTATATTAT
8260853 T
1 T
8260854 CTCGGATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 7 0.27
14 18 0.69
15 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTTTATATTAT
Found at i:8261275 original size:79 final size:78
Alignment explanation
Indices: 8261191--8261338 Score: 181
Period size: 78 Copynumber: 1.9 Consensus size: 78
8261181 CGCAACACGA
* * * **
8261191 TTTTCAAATTTACAACGCG-ATTCTCCAAATTCGCAACGCTAATTACTGATATAGGTAAACACAA
1 TTTTCAAATTCACAACGCGAAGT-T-CAAATTCGCAACACTAATTACCAATATAGGTAAACACAA
*
8261255 TTATTCACCACTCAG
64 CTATTCACCACTCAG
* ***
8261270 TTTTCAAATTCGCAACGCGAAGTTCGTTTTCGCAACACTAATTACCAATATAGGTAAACACAACT
1 TTTTCAAATTCACAACGCGAAGTTCAAATTCGCAACACTAATTACCAATATAGGTAAACACAACT
8261335 ATTC
66 ATTC
8261339 GCAACGCGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
78 38 0.66
79 18 0.31
80 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (78 bp):
TTTTCAAATTCACAACGCGAAGTTCAAATTCGCAACACTAATTACCAATATAGGTAAACACAACT
ATTCACCACTCAG
Found at i:8261735 original size:20 final size:20
Alignment explanation
Indices: 8261710--8261779 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
8261700 GGTAATTAGC
8261710 GTTGCGAATTTGAAAACTGA
1 GTTGCGAATTTGAAAACTGA
* *
8261730 GTTGCGAATTTGGAGAA-TCGT
1 GTTGCGAATTT-GAAAACT-GA
8261751 GTTGCGAATTTGAAAACTGA
1 GTTGCGAATTTGAAAACTGA
8261771 GTTGCGAAT
1 GTTGCGAAT
8261780 AGTTGTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
20 26 0.60
21 17 0.40
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (20 bp):
GTTGCGAATTTGAAAACTGA
Found at i:8261854 original size:99 final size:99
Alignment explanation
Indices: 8261646--8261878 Score: 285
Period size: 99 Copynumber: 2.4 Consensus size: 99
8261636 ATTAGTAAAA
* * * *
8261646 AATCTCGTTGCGAATTTGAAAACTGAGTTGTGAATAGTTGTGTTTACCTATATCGGTAATTAGCG
1 AATCGCGTTGCGAATTTGAAAACTGAGTTGCGAATAGTTGTATTTACATATATCGGTAATTAGCG
****
8261711 TTGCGAATTTGAAAACTGAGTTGCGAATTTGGAG
66 TTGCGAATTTGAAAACTGAGTTGCGAAAAACGAG
*
8261745 AATCGTGTTGCGAATTTGAAAACTGAGTTGCGAATAGTTGTATTTACATATATCGGTAATTAGCG
1 AATCGCGTTGCGAATTTGAAAACTGAGTTGCGAATAGTTGTATTTACATATATCGGTAATTAGCG
*
8261810 TTGCGAATTTGGAAAA-TCGCGTTGC-AAAAACGA-
66 TTGCGAATTT-GAAAACT-GAGTTGCGAAAAACGAG
* * *
8261843 AATTTGCGTTGCGAATTT-AGAAATTGTGTTGCGAAT
1 AA-TCGCGTTGCGAATTTGA-AAACTGAGTTGCGAAT
8261879 TTGGAGTTCG
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
98 3 0.03
99 102 0.88
100 11 0.09
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.34
Consensus pattern (99 bp):
AATCGCGTTGCGAATTTGAAAACTGAGTTGCGAATAGTTGTATTTACATATATCGGTAATTAGCG
TTGCGAATTTGAAAACTGAGTTGCGAAAAACGAG
Found at i:8261920 original size:19 final size:20
Alignment explanation
Indices: 8261850--8261919 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
8261840 CGAAATTTGC
* * *
8261850 GTTGCGAATTTAGAAATTGT
1 GTTGCGAATTTAGAGATCGA
* * *
8261870 GTTGCGAATTTGGAGTTCGC
1 GTTGCGAATTTAGAGATCGA
8261890 GTTGCGAATTT-GAGATCGA
1 GTTGCGAATTTAGAGATCGA
8261909 GTTGCGAATTT
1 GTTGCGAATTT
8261920 GTTGGTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 17 0.40
20 26 0.60
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.37
Consensus pattern (20 bp):
GTTGCGAATTTAGAGATCGA
Found at i:8262116 original size:18 final size:16
Alignment explanation
Indices: 8262093--8262127 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8262083 TCAAATTTAT
8262093 TATTTAATCTAAAATAAA
1 TATTTAAT-T-AAATAAA
8262111 TATTTAATTAAATAAA
1 TATTTAATTAAATAAA
8262127 T
1 T
8262128 TTCTAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 1 0.06
18 8 0.47
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTAATTAAATAAA
Found at i:8263904 original size:22 final size:24
Alignment explanation
Indices: 8263879--8263922 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8263869 TAAAGTAATT
8263879 GTATT-ATAT-TATATTTTAAAGA
1 GTATTAATATATATATTTTAAAGA
*
8263901 GTATTAATTTATATATTTTAAA
1 GTATTAATATATATATTTTAAA
8263923 TGTCTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 3 0.16
24 11 0.58
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (24 bp):
GTATTAATATATATATTTTAAAGA
Found at i:8264089 original size:29 final size:28
Alignment explanation
Indices: 8264052--8264163 Score: 86
Period size: 29 Copynumber: 3.9 Consensus size: 28
8264042 TAATAATTTA
8264052 TTATATATTATTAAAATAAAAATATAATAT
1 TTAT-TATTA-TAAAATAAAAATATAATAT
* * *
8264082 TTATTATTATTAAAA-AATAAT-TGA-GT
1 TTATTATTA-TAAAATAAAAATATAATAT
* *
8264108 GTATTATTATAATATAAAAATATAATAT
1 TTATTATTATAAAATAAAAATATAATAT
*
8264136 AATATTATTATAAATATTAATAAATATA
1 -TTATTATTATAAA-A-TAA-AAATATA
8264164 TTTTAAATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
25 4 0.06
26 14 0.22
27 4 0.06
28 6 0.09
29 22 0.34
30 5 0.08
31 3 0.05
32 7 0.11
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (28 bp):
TTATTATTATAAAATAAAAATATAATAT
Found at i:8264098 original size:26 final size:26
Alignment explanation
Indices: 8264053--8264147 Score: 79
Period size: 26 Copynumber: 3.5 Consensus size: 26
8264043 AATAATTTAT
*
8264053 TATATATTATTA-AAATAAAAATATAA
1 TATATATTATTATATA-AAAAATATAA
* *
8264079 TATTTATTATTAT-TAAAAAATA-AT
1 TATATATTATTATATAAAAAATATAA
*
8264103 TGAGTGTATTATTATAATATAAAAATATAA
1 T-A-TATATTATTAT-ATA-AAAAATATAA
8264133 TATAATATTATTATA
1 TAT-ATATTATTATA
8264148 AATATTAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
24 2 0.04
25 8 0.15
26 22 0.40
28 4 0.07
29 17 0.31
30 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (26 bp):
TATATATTATTATATAAAAAATATAA
Found at i:8264152 original size:22 final size:20
Alignment explanation
Indices: 8264125--8264173 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
8264115 TATAATATAA
8264125 AAATATAATATAATATTATTAT
1 AAATATAATA-AATA-TATTAT
*
8264147 AAATATTAATAAATATATTTT
1 AAATA-TAATAAATATATTAT
8264168 AAATAT
1 AAATAT
8264174 TTAAATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 10 0.40
22 9 0.36
23 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATAATAAATATATTAT
Found at i:8264158 original size:26 final size:26
Alignment explanation
Indices: 8264129--8264191 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 26
8264119 ATATAAAAAT
8264129 ATAATATAATATTATTATAAATA-TT-A
1 ATAATATAATATT-TT-TAAATATTTAA
8264155 ATAA-AT-ATA-TTTTAAATATTTAA
1 ATAATATAATATTTTTAAATATTTAA
8264178 ATAAT-TAATATTTT
1 ATAATATAATATTTT
8264192 GATTAAAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
21 6 0.19
22 4 0.12
23 7 0.22
24 6 0.19
25 5 0.16
26 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (26 bp):
ATAATATAATATTTTTAAATATTTAA
Found at i:8264165 original size:21 final size:22
Alignment explanation
Indices: 8264109--8264182 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
8264099 TAATTGAGTG
*
8264109 TATTATTATAATATA--A-AAA
1 TATTAATATAATATATTATAAA
8264128 TA-TAATATAATATTATTATAAA
1 TATTAATATAATA-TATTATAAA
*
8264150 TATTAATA-AATATATTTTAAA
1 TATTAATATAATATATTATAAA
8264171 TATTTAA-ATAAT
1 TA-TTAATATAAT
8264183 TAATATTTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.20
19 4 0.09
21 12 0.26
22 16 0.35
23 5 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TATTAATATAATATATTATAAA
Found at i:8264431 original size:6 final size:6
Alignment explanation
Indices: 8264420--8264457 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
8264410 AACAAATGCT
8264420 TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG TG
1 TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG TG
8264458 TAACTAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.00, G:0.50, T:0.34
Consensus pattern (6 bp):
TGAGTG
Found at i:8270746 original size:13 final size:14
Alignment explanation
Indices: 8270712--8270743 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8270702 CCAAACACTG
*
8270712 AAAAATATTTTTTA
1 AAAAATATTTTCTA
8270726 AAAAATATTTTCTA
1 AAAAATATTTTCTA
8270740 AAAA
1 AAAA
8270744 TATAATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAAATATTTTCTA
Found at i:8275607 original size:18 final size:20
Alignment explanation
Indices: 8275571--8275608 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8275561 CACAGAATGT
8275571 AAGATTACCAGTGGGAATAA
1 AAGATTACCAGTGGGAATAA
8275591 AAGATTACCA-T-GGAATAA
1 AAGATTACCAGTGGGAATAA
8275609 GATTACTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (20 bp):
AAGATTACCAGTGGGAATAA
Found at i:8275746 original size:18 final size:18
Alignment explanation
Indices: 8275723--8275770 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
8275713 AAAATGTCCT
*
8275723 TATTATATATTTGTATAA
1 TATTATATATTTGTAAAA
*
8275741 TATTATA-AATTGTAAAA
1 TATTATATATTTGTAAAA
8275758 TATTTATATATTT
1 TA-TTATATATTT
8275771 TCTTTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 10 0.40
18 12 0.48
19 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TATTATATATTTGTAAAA
Found at i:8279949 original size:20 final size:20
Alignment explanation
Indices: 8279924--8279963 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8279914 TCATATCCCA
8279924 CTTTCTTTTTTGTTTTTCTT
1 CTTTCTTTTTTGTTTTTCTT
8279944 CTTTCTTTTTTGTTTTTCTT
1 CTTTCTTTTTTGTTTTTCTT
8279964 AATTTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (20 bp):
CTTTCTTTTTTGTTTTTCTT
Found at i:8290416 original size:229 final size:228
Alignment explanation
Indices: 8289987--8290481 Score: 895
Period size: 229 Copynumber: 2.2 Consensus size: 228
8289977 GTTATATTGT
* * *
8289987 AAAGTATTTATCCTTTATATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
* *
8290052 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATTAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
8290117 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
8290182 AAAAATTGAAACATAAATTACATAACTTTAGAAA
196 AAAAATTGAAACATAAATTACATAACTTTA-AAA
8290216 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAATATA-TTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATTTATTATT
8290280 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAACAATCA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAAACAATCA
8290345 AATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT
129 AATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT
8290410 -AAAAAATTGAAACATAAATTACATAACTTTAAAA
194 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
8290444 AAAGTATATATCATTTTTATAAAAGTGTCTATACTTAT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
8290482 AAAAGTAGGT
Statistics
Matches: 258, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
228 40 0.16
229 135 0.52
230 83 0.32
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (228 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:8290837 original size:161 final size:162
Alignment explanation
Indices: 8290605--8290944 Score: 486
Period size: 161 Copynumber: 2.1 Consensus size: 162
8290595 ACCGGTATAG
* * *
8290605 AAATGATAAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATC
1 AAATGATAAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATC
* *
8290670 GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTAAAAAA
66 GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAA
* ** *
8290735 TGTATCGATCCAGTACGATATACCAGGT-AACA
131 TATATCGATCCACAACGATATAACAGGTGAA-A
* * * *
8290767 AAATGATAAAACCGGTAAAACGTTACCTGATATATTGAACGTGTCGATACTTT-ATATAAGGATC
1 AAATGATAAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATC
* ** *
8290831 GACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAAAAAAA
66 GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAA
*
8290896 TATATCGATCCACAACGATATAACATGTGAAA
131 TATATCGATCCACAACGATATAACAGGTGAAA
*
8290928 ATATGATAAAACCGGTA
1 AAATGATAAAACCGGTA
8290945 TCAAAATAAT
Statistics
Matches: 158, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
161 110 0.70
162 48 0.30
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (162 bp):
AAATGATAAAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTAATATAAGGATC
GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAAAAAAA
TATATCGATCCACAACGATATAACAGGTGAAA
Found at i:8291139 original size:24 final size:24
Alignment explanation
Indices: 8291112--8291166 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
8291102 TGTATCGATT
8291112 AAATATAA-ATAACATATCCGATGA
1 AAATATAAGATAA-ATATCCGATGA
* **
8291136 AAATATAAGCTAAATATCCTCTGA
1 AAATATAAGATAAATATCCGATGA
8291160 AAATATA
1 AAATATA
8291167 TAGAACGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (24 bp):
AAATATAAGATAAATATCCGATGA
Found at i:8293215 original size:21 final size:21
Alignment explanation
Indices: 8293189--8293253 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
8293179 AAGACAATCA
*
8293189 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
8293210 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
8293231 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
8293252 AG
1 AG
8293254 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:8293329 original size:33 final size:33
Alignment explanation
Indices: 8293287--8293352 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
8293277 AAATAGATGG
*
8293287 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
8293320 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
8293353 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:8295167 original size:19 final size:19
Alignment explanation
Indices: 8295143--8295191 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
8295133 AATGTAGGGT
8295143 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
8295162 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
8295181 TAATTTTGTAT
1 TAATTTTGTAT
8295192 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:8295628 original size:200 final size:200
Alignment explanation
Indices: 8295284--8296168 Score: 1680
Period size: 200 Copynumber: 4.4 Consensus size: 200
8295274 ATACACATTA
* *
8295284 AGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAAGTGTCGATCCCAAAAATATCGAAAACC
1 AGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAAACATCGAAAACC
8295349 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGA
*
8295414 ATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTATCGATAGTTTTGGTCCAGAATGAATG
130 ATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATG
8295479 GAAAAC
195 GAAAAC
8295485 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
8295550 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
8295615 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
8295680 AAAAC
196 AAAAC
8295685 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
*
8295750 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGATTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
*
8295815 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
8295880 AAAAC
196 AAAAC
* *
8295885 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACAA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
8295950 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
8296015 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
131 TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
8296080 AAAAC
196 AAAAC
*
8296085 AGGGTGCAACCATAAAGTGTCGATCCATATATACAAAGTGTCGATCCCAAAAACATCGAAAACCA
1 AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
8296150 AAAGTATAATGTAATATGT
66 AAAGTATAATGTAATATGT
8296169 TTCTGATCAG
Statistics
Matches: 674, Mismatches: 10, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
200 643 0.95
201 31 0.05
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (200 bp):
AGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAACCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAA
TATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAGTTTTGGTCCAGAATGAATGG
AAAAC
Found at i:8296764 original size:25 final size:25
Alignment explanation
Indices: 8296736--8296800 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
8296726 TTATCATTAA
8296736 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
8296761 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
8296786 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
8296801 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:8297179 original size:23 final size:23
Alignment explanation
Indices: 8297148--8297220 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
8297138 ATAGGTAAAA
*
8297148 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8297171 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8297194 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8297217 ATAT
1 ATAT
8297221 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8297612 original size:23 final size:23
Alignment explanation
Indices: 8297581--8297653 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
8297571 ATAGGTAAAA
*
8297581 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8297604 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8297627 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
8297650 ATAT
1 ATAT
8297654 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8298043 original size:23 final size:23
Alignment explanation
Indices: 8298012--8298084 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
8298002 ATAGGTAAAA
*
8298012 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8298035 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8298058 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8298081 ATAT
1 ATAT
8298085 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8298237 original size:431 final size:431
Alignment explanation
Indices: 8296941--8298250 Score: 2462
Period size: 433 Copynumber: 3.0 Consensus size: 431
8296931 CTTTGGTTAA
*
8296941 TATTATTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
8297005 TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATT-AAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTGA
* *
8297069 AACATAAATTACATAACTTTAAAAGAAGTATCAATCCTTTTTGTAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
8297134 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
* *
8297199 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATTCTTTTTATAAAAGTGTCCATACTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
*
8297264 CACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
8297329 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
8297370 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
8297435 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTGA
*
8297500 AACATAAATTACATAACTTTAAAAGAAGTATCGATCTTTTTTTATAAAAAAGTATGGACACTTTC
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATC-CTTTTTAT-AAAAAGTATGGACACTTTC
8297565 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
194 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATA
*
8297630 TAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTT
259 TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTT
8297695 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
324 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAA
8297760 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
389 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
8297803 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
8297868 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTGA
8297933 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
131 AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
*
8297998 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATA
196 TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
*
8298063 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAATTGTCTATACTTTTTT
261 ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
*
8298128 CACTGTGGAAAACATTAATTTAAGGTTATATTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
326 CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
8298193 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
8298234 TATTATTAAATTAAAAA
1 TATTATTAAATTAAAAA
8298251 CAATAAACAT
Statistics
Matches: 860, Mismatches: 17, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
429 12 0.01
430 103 0.12
431 315 0.37
432 13 0.02
433 417 0.48
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (431 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTGA
AACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
TATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATA
ATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTT
CACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATT
ATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
Found at i:8304763 original size:30 final size:30
Alignment explanation
Indices: 8304702--8304766 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
8304692 CAAACACTTT
* * *
8304702 TGATATCTTTTATAGGCCCATGTACGGTAC
1 TGATATCTTTTATAAGCCCATGAACAGTAC
* *
8304732 TGATATCTTTTATAAGCCTATGAACATTAC
1 TGATATCTTTTATAAGCCCATGAACAGTAC
8304762 TGATA
1 TGATA
8304767 ACTAAAGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (30 bp):
TGATATCTTTTATAAGCCCATGAACAGTAC
Found at i:8304917 original size:35 final size:35
Alignment explanation
Indices: 8304830--8305064 Score: 285
Period size: 35 Copynumber: 6.7 Consensus size: 35
8304820 CTCGTATAAA
*
8304830 CTGTGTCCCGAAGGACCTATCATCTCGAAGGATGTCAT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATG---T
* * *
8304868 CTGTATCCCAAAGGACCTATTATCCCGAAGGATGT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
* * *
8304903 CTGTGTCCCGAAGGACCAATCATTCCGAAGGA--C
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
** * * *
8304936 CAATCATCCCGAAGGACCAATCATCCTGAAGGATGT
1 CTGT-GTCCCGAAGGACCTATCATCCCGAAGGATGT
*
8304972 CTGTGTCCCGAAGGACCTATCATCTCGAAGGATGT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
8305007 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
* *
8305042 CTATGTCCCGAAAGACCTATCAT
1 CTGTGTCCCGAAGGACCTATCAT
8305065 ATGTCTCGAA
Statistics
Matches: 169, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
33 2 0.01
34 25 0.15
35 110 0.65
36 2 0.01
38 30 0.18
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (35 bp):
CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
Found at i:8304986 original size:18 final size:18
Alignment explanation
Indices: 8304963--8305053 Score: 73
Period size: 18 Copynumber: 5.2 Consensus size: 18
8304953 CAATCATCCT
*
8304963 GAAGGATGTCTGTGTCCC
1 GAAGGATGTCTATGTCCC
* * *
8304981 GAAGGA--CCTATCATCTC
1 GAAGGATGTCTAT-GTCCC
*
8304998 GAAGGATGTCTGTGTCCC
1 GAAGGATGTCTATGTCCC
* *
8305016 GAAGGA--CCTATCATCCC
1 GAAGGATGTCTAT-GTCCC
8305033 GAAGGATGTCTATGTCCC
1 GAAGGATGTCTATGTCCC
8305051 GAA
1 GAA
8305054 AGACCTATCA
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
16 6 0.11
17 19 0.35
18 22 0.41
19 7 0.13
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.24
Consensus pattern (18 bp):
GAAGGATGTCTATGTCCC
Found at i:8305018 original size:104 final size:105
Alignment explanation
Indices: 8304835--8305038 Score: 304
Period size: 104 Copynumber: 1.9 Consensus size: 105
8304825 ATAAACTGTG
* *
8304835 TCCCGAAGGACCTATCATCTCGAAGGATGTCATCTGTATCCCAAAGGACCTATTATCCCGAAGGA
1 TCCCGAAGGACCAATCATCTCGAAGGATG--ATCTGTATCCCAAAGGACCTATCATCCCGAAGGA
*
8304900 TGTCTGTGTCCCGAAGGACCAATCATTCCGAAGGACCAATCA
64 TGTCTGTGTCCCGAAGGACCAATCATCCCGAAGGACCAATCA
* * *
8304942 TCCCGAAGGACCAATCATC-CTGAAGGATG-TCTGTGTCCCGAAGGACCTATCATCTCGAAGGAT
1 TCCCGAAGGACCAATCATCTC-GAAGGATGATCTGTATCCCAAAGGACCTATCATCCCGAAGGAT
*
8305005 GTCTGTGTCCCGAAGGACCTATCATCCCGAAGGA
65 GTCTGTGTCCCGAAGGACCAATCATCCCGAAGGA
8305039 TGTCTATGTC
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
104 62 0.70
106 1 0.01
107 26 0.29
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (105 bp):
TCCCGAAGGACCAATCATCTCGAAGGATGATCTGTATCCCAAAGGACCTATCATCCCGAAGGATG
TCTGTGTCCCGAAGGACCAATCATCCCGAAGGACCAATCA
Found at i:8305034 original size:17 final size:17
Alignment explanation
Indices: 8304835--8305038 Score: 117
Period size: 17 Copynumber: 11.6 Consensus size: 17
8304825 ATAAACTGTG
8304835 TCCCGAAGGACCTATCA
1 TCCCGAAGGACCTATCA
* **
8304852 TCTCGAAGGATGTCATCTGTA
1 TCCCGAAGGACCT-ATC---A
* *
8304873 TCCCAAAGGACCTATTA
1 TCCCGAAGGACCTATCA
* * *
8304890 TCCCGAAGGATGTCTGT-G
1 TCCCGAAGGA--CCTATCA
*
8304908 TCCCGAAGGACCAATCA
1 TCCCGAAGGACCTATCA
* *
8304925 TTCCGAAGGACCAATCA
1 TCCCGAAGGACCTATCA
*
8304942 TCCCGAAGGACCAATCA
1 TCCCGAAGGACCTATCA
* * * *
8304959 TCCTGAAGGATGTCTGT-G
1 TCCCGAAGGA--CCTATCA
8304977 TCCCGAAGGACCTATCA
1 TCCCGAAGGACCTATCA
* * * *
8304994 TCTCGAAGGATGTCTGT-G
1 TCCCGAAGGA--CCTATCA
8305012 TCCCGAAGGACCTATCA
1 TCCCGAAGGACCTATCA
8305029 TCCCGAAGGA
1 TCCCGAAGGA
8305039 TGTCTATGTC
Statistics
Matches: 139, Mismatches: 35, Indels: 26
0.69 0.17 0.13
Matches are distributed among these distances:
16 8 0.06
17 80 0.58
18 31 0.22
19 8 0.06
20 2 0.01
21 10 0.07
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (17 bp):
TCCCGAAGGACCTATCA
Found at i:8306717 original size:13 final size:13
Alignment explanation
Indices: 8306693--8306736 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
8306683 TTTAGTAATT
8306693 TTAAGATTTTGAAA
1 TTAAG-TTTTGAAA
8306707 TTAAGTTTTGAAA
1 TTAAGTTTTGAAA
**
8306720 TTACTCTTTTGAAA
1 TTA-AGTTTTGAAA
8306734 TTA
1 TTA
8306737 CTCCCCCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (13 bp):
TTAAGTTTTGAAA
Found at i:8306729 original size:14 final size:14
Alignment explanation
Indices: 8306699--8306739 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
8306689 AATTTTAAGA
**
8306699 TTTTGAAATTA-AG
1 TTTTGAAATTACTC
8306712 TTTTGAAATTACTC
1 TTTTGAAATTACTC
8306726 TTTTGAAATTACTC
1 TTTTGAAATTACTC
8306740 CCCCTTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (14 bp):
TTTTGAAATTACTC
Found at i:8306833 original size:66 final size:66
Alignment explanation
Indices: 8306707--8306833 Score: 213
Period size: 66 Copynumber: 1.9 Consensus size: 66
8306697 GATTTTGAAA
8306707 TTAAGTTTTGAAATTACTCTTTTGAAATTACTCCCCCTTACTTTAACACTTCTCCCATTTAGTAA
1 TTAAGTTTTGAAATTACTCTTTTGAAATTAC-CCCCCTTACTTTAACACTTCTCCCATTTAGTAA
8306772 TT
65 TT
8306774 TTAAGATTTTGAAATTACTCTTTTGAAATTA-CCCCCTTACTTTAACACTTC-CCTCATTTA
1 TTAAG-TTTTGAAATTACTCTTTTGAAATTACCCCCCTTACTTTAACACTTCTCC-CATTTA
8306834 TCATTTAAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
65 2 0.03
66 26 0.45
67 5 0.09
68 25 0.43
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.44
Consensus pattern (66 bp):
TTAAGTTTTGAAATTACTCTTTTGAAATTACCCCCCTTACTTTAACACTTCTCCCATTTAGTAAT
T
Found at i:8317123 original size:29 final size:30
Alignment explanation
Indices: 8317091--8317164 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
8317081 AAATTACCAT
*
8317091 TTTGGTTC-CTAAACTTT-TAAAGT-TTATAC
1 TTTGG-TCACTAAACTTTATAAA-TATTATAA
*
8317120 TTTGGTCACCAAACTTTATAAATATTATAA
1 TTTGGTCACTAAACTTTATAAATATTATAA
8317150 TTTGGTCACTAAACT
1 TTTGGTCACTAAACT
8317165 AAATCCATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.05
29 14 0.36
30 23 0.59
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (30 bp):
TTTGGTCACTAAACTTTATAAATATTATAA
Found at i:8317837 original size:6 final size:6
Alignment explanation
Indices: 8317825--8317872 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
8317815 TTTTTTCATT
* * *
8317825 TTTTTC TTCTTC TTCTTC TTTTTC TTATTTC TTTTTC TTATTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC TTTTT
8317873 TTAGTTCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:8317870 original size:12 final size:13
Alignment explanation
Indices: 8317840--8317881 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
8317830 CTTCTTCTTC
*
8317840 TTCTTTTTCTTAT
1 TTCTTTTTCTTAG
8317853 TTCTTTTTCTTA-
1 TTCTTTTTCTTAG
8317865 TTCTTTTT-TTAG
1 TTCTTTTTCTTAG
8317877 TTCTT
1 TTCTT
8317882 ATGCCTTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 3 0.11
12 13 0.46
13 12 0.43
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.76
Consensus pattern (13 bp):
TTCTTTTTCTTAG
Found at i:8321541 original size:21 final size:21
Alignment explanation
Indices: 8321499--8321541 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8321489 TTTCTGGGCT
* *
8321499 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
8321520 AGGGGAATCGATTCCCCCTCA
1 AGGGGAATCGATACCCACTCA
8321541 A
1 A
8321542 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8322228 original size:23 final size:23
Alignment explanation
Indices: 8322196--8322257 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
8322186 TTATTATATA
8322196 GCACTACGGTGAAATTCTACACG
1 GCACTACGGTGAAATTCTACACG
* * **
8322219 GCACTCCGGTGTAATTCTACGTG
1 GCACTACGGTGAAATTCTACACG
* *
8322242 GCACTTCGGTGCAATT
1 GCACTACGGTGAAATT
8322258 ATACGAGCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (23 bp):
GCACTACGGTGAAATTCTACACG
Found at i:8322262 original size:23 final size:23
Alignment explanation
Indices: 8322218--8322262 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8322208 AATTCTACAC
* *
8322218 GGCACTCCGGTGTAATTCTACGT
1 GGCACTCCGGTGCAATTATACGT
*
8322241 GGCACTTCGGTGCAATTATACG
1 GGCACTCCGGTGCAATTATACG
8322263 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (23 bp):
GGCACTCCGGTGCAATTATACGT
Found at i:8324883 original size:24 final size:21
Alignment explanation
Indices: 8324834--8324883 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 21
8324824 AGCTCCGAAA
*
8324834 GAATTGCAAGAGTTAAAGAAT
1 GAATTGCAAGAGTTAAAGAAG
*
8324855 CAATTGCAAGAGCTGTTAAAGAAG
1 GAATTGCAAGA---GTTAAAGAAG
8324879 GAATT
1 GAATT
8324884 TATTCGACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 10 0.43
24 13 0.57
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (21 bp):
GAATTGCAAGAGTTAAAGAAG
Found at i:8328338 original size:21 final size:21
Alignment explanation
Indices: 8328296--8328338 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8328286 TTTCTGGGCT
* *
8328296 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
* *
8328317 AGGGGAATCGATTCCCCCTCA
1 AGGGGAATCGATACCCACTCA
8328338 A
1 A
8328339 ACGAATATGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.19
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:8329026 original size:23 final size:23
Alignment explanation
Indices: 8328986--8329031 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8328976 CATTATTATA
* * *
8328986 TGGCACTACGGTGTAATTCTACG
1 TGGCACTACAGTGCAATTATACG
*
8329009 TGGCACTTCAGTGCAATTATACG
1 TGGCACTACAGTGCAATTATACG
8329032 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (23 bp):
TGGCACTACAGTGCAATTATACG
Found at i:8330644 original size:30 final size:30
Alignment explanation
Indices: 8330583--8330647 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
8330573 CAAACACTTT
* * * *
8330583 TGATATCTTTTATAGGCCCATGTACGGTAC
1 TGATATATTTTATAAGCCCATGAACAGTAC
*
8330613 TGATATATTTTATAAGCCCATGAACATTAC
1 TGATATATTTTATAAGCCCATGAACAGTAC
8330643 TGATA
1 TGATA
8330648 ACTCAAGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (30 bp):
TGATATATTTTATAAGCCCATGAACAGTAC
Found at i:8330801 original size:35 final size:35
Alignment explanation
Indices: 8330711--8330841 Score: 183
Period size: 35 Copynumber: 3.7 Consensus size: 35
8330701 CTCGTATAAA
8330711 CTGTG-CCTCGAAGGACCTATCATCCCGAAGGATGTCAT
1 CTGTGTCC-CGAAGGACCTATCATCCCGAAGGATG---T
* *
8330749 CTGTGTCCCAAAGGACCTATCATCCCAAAGGATGT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
*
8330784 CTGTGTCCCGAATGACCTATCATCCCGAAGGATGT
1 CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
*
8330819 CTGTGTCCCGAATGACCTATCAT
1 CTGTGTCCCGAAGGACCTATCAT
8330842 ATGTCTCGAA
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
35 56 0.64
38 29 0.33
39 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (35 bp):
CTGTGTCCCGAAGGACCTATCATCCCGAAGGATGT
Found at i:8330829 original size:18 final size:18
Alignment explanation
Indices: 8330771--8330830 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
8330761 GGACCTATCA
*
8330771 TCCCAAAGGATGTCTGTG
1 TCCCGAAGGATGTCTGTG
* * * *
8330789 TCCCGAATGA--CCTATCA
1 TCCCGAAGGATGTCTGT-G
8330806 TCCCGAAGGATGTCTGTG
1 TCCCGAAGGATGTCTGTG
8330824 TCCCGAA
1 TCCCGAA
8330831 TGACCTATCA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
18 15 0.50
19 3 0.10
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (18 bp):
TCCCGAAGGATGTCTGTG
Found at i:8333020 original size:30 final size:30
Alignment explanation
Indices: 8332984--8333058 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
8332974 AAATTACTAT
** *
8332984 TTTGGTCCCTAAACTTTTCAAAGT-TTATAC
1 TTTGGTCCCTAAACTTCACAAA-TCTTATAA
8333014 TTTGGTCACC-AAACTTCACAAATCTTATAA
1 TTTGGTC-CCTAAACTTCACAAATCTTATAA
*
8333044 TTTGGTCACTAAACT
1 TTTGGTCCCTAAACT
8333059 AAATCCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
29 2 0.05
30 34 0.89
31 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (30 bp):
TTTGGTCCCTAAACTTCACAAATCTTATAA
Found at i:8339174 original size:36 final size:37
Alignment explanation
Indices: 8339065--8339167 Score: 167
Period size: 35 Copynumber: 2.9 Consensus size: 37
8339055 CAACTTTGAA
8339065 AAAAATGG-TTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTTCAAAGTTTGGTAAATGTTTCTTTG
*
8339101 -AAAATGATTTTT-AAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTTCAAAGTTTGGTAAATGTTTCTTTG
*
8339136 AAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 AAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
8339168 GTTGAAATAT
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
35 29 0.48
36 15 0.25
37 17 0.28
ACGTcount: A:0.31, C:0.04, G:0.19, T:0.46
Consensus pattern (37 bp):
AAAAATGGTTTTTCAAAGTTTGGTAAATGTTTCTTTG
Found at i:8339603 original size:16 final size:17
Alignment explanation
Indices: 8339577--8339610 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8339567 ATTCATTACT
*
8339577 ATTTACGTGAATGGTAA
1 ATTTACGTGAATAGTAA
8339594 ATTT-CGTGAATAGTAA
1 ATTTACGTGAATAGTAA
8339610 A
1 A
8339611 AATTTTGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (17 bp):
ATTTACGTGAATAGTAA
Found at i:8343701 original size:21 final size:21
Alignment explanation
Indices: 8343677--8343737 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
8343667 AACTTTGAAA
8343677 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
8343698 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
8343712 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
8343733 AAATG
1 AAATG
8343738 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:8343784 original size:36 final size:36
Alignment explanation
Indices: 8343669--8343777 Score: 184
Period size: 35 Copynumber: 3.0 Consensus size: 36
8343659 TGGCAACCAA
8343669 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
8343706 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
8343741 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
8343778 ATTGAAATAT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
35 35 0.51
36 7 0.10
37 27 0.39
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:8349185 original size:17 final size:19
Alignment explanation
Indices: 8349163--8349205 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
8349153 GAAACATCAA
*
8349163 ATGCACT-TGA-TGCATCG
1 ATGCACTCTGAGTGCACCG
*
8349180 ATGCACTCTTAGTGCACCG
1 ATGCACTCTGAGTGCACCG
8349199 ATGCACT
1 ATGCACT
8349206 AAGGGTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 2 0.09
19 13 0.59
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (19 bp):
ATGCACTCTGAGTGCACCG
Found at i:8356578 original size:21 final size:21
Alignment explanation
Indices: 8356536--8356579 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8356526 ACTCCGGGAG
* *
8356536 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
8356557 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
8356578 CT
1 CT
8356580 CCTCCAGCTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:8357689 original size:65 final size:64
Alignment explanation
Indices: 8357620--8357778 Score: 198
Period size: 65 Copynumber: 2.5 Consensus size: 64
8357610 AATTAAATTG
* *
8357620 AACATCGAATGCATTTCATGCATCGATGCACATA-CCATACACCGATGCACTGAGGAT-TTTATG
1 AACATCGAATGCATTTAATGCATCGATGCACA-AGCCATACACCGATGCACTCAGGATATTT-TG
8357683 AA
64 -A
* * * *
8357685 AACATCGAATGCATTTAATGCATCGATGCACAAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTAATGCATCGATGCACAAGCCATACACCGATGCACTCAGGATATTTTGA
* *
8357749 AACATCGAATGCACTTGATGCATCG-TGCAC
1 AACATCGAATGCATTTAATGCATCGATGCAC
8357779 TCTTAGTGCA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
63 5 0.06
64 25 0.30
65 51 0.61
66 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (64 bp):
AACATCGAATGCATTTAATGCATCGATGCACAAGCCATACACCGATGCACTCAGGATATTTTGA
Found at i:8361390 original size:24 final size:24
Alignment explanation
Indices: 8361326--8361383 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 24
8361316 TGAACGACCT
*
8361326 GTTTTTTTACCGGATTAAAAACCG
1 GTTTTTTTACCGGATAAAAAACCG
8361350 GTTTTTTTCAAACCGGATAAAAAACCG
1 GTTTTTTT---ACCGGATAAAAAACCG
8361377 GTTTTTT
1 GTTTTTT
8361384 ATCCGGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 8 0.27
27 22 0.73
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (24 bp):
GTTTTTTTACCGGATAAAAAACCG
Found at i:8368905 original size:29 final size:32
Alignment explanation
Indices: 8368873--8368939 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 32
8368863 TTTCTTAATA
8368873 TTAAAA-AATAA-ATAAAT-ATTAATAAAACG
1 TTAAAATAATAATATAAATAATTAATAAAACG
* *
8368902 TTAAAATAATAATATATATAATTTATAAAA-G
1 TTAAAATAATAATATAAATAATTAATAAAACG
8368933 -TAAAATA
1 TTAAAATA
8368940 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 6 0.18
30 12 0.36
31 6 0.18
32 9 0.27
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (32 bp):
TTAAAATAATAATATAAATAATTAATAAAACG
Found at i:8368929 original size:19 final size:19
Alignment explanation
Indices: 8368907--8368970 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 19
8368897 AAACGTTAAA
8368907 ATAATAATATATATAATTT
1 ATAATAATATATATAATTT
* *
8368926 ATAA-AAGTAAAATATTTATTT
1 ATAATAA-T-ATATA-TAATTT
*
8368947 AAAAATAATATATATAATTT
1 -ATAATAATATATATAATTT
8368967 ATAA
1 ATAA
8368971 AAGCAAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
18 2 0.06
19 8 0.24
20 9 0.26
21 9 0.26
22 4 0.12
23 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATAATAATATATATAATTT
Found at i:8368939 original size:24 final size:23
Alignment explanation
Indices: 8368903--8368981 Score: 80
Period size: 24 Copynumber: 3.6 Consensus size: 23
8368893 AATAAAACGT
8368903 TAAAATAATAATATATATAATTTA
1 TAAAATAA-AATATATATAATTTA
8368927 TAAAAGTAAAATAT-T-T-ATTTA
1 TAAAA-TAAAATATATATAATTTA
8368948 -AAAAT--AATATATATAATTTA
1 TAAAATAAAATATATATAATTTA
*
8368968 TAAAAGCAAAATAT
1 TAAAA-TAAAATAT
8368982 TTATTTATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 16
0.73 0.02 0.25
Matches are distributed among these distances:
17 5 0.11
18 1 0.02
19 2 0.04
20 9 0.20
21 9 0.20
22 1 0.02
23 1 0.02
24 15 0.33
25 3 0.07
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (23 bp):
TAAAATAAAATATATATAATTTA
Found at i:8368987 original size:21 final size:21
Alignment explanation
Indices: 8368922--8368994 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
8368912 AATATATATA
8368922 ATTTATAAAAGTAAAATATTT
1 ATTTATAAAAGTAAAATATTT
* *
8368943 ATTTA-AAAA-TAATATATATA
1 ATTTATAAAAGTAAAATAT-TT
*
8368963 ATTTATAAAAGCAAAATATTT
1 ATTTATAAAAGTAAAATATTT
8368984 ATTTATTAAAA
1 ATTTA-TAAAA
8368995 ATATCAGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
19 7 0.16
20 10 0.23
21 15 0.35
22 11 0.26
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (21 bp):
ATTTATAAAAGTAAAATATTT
Found at i:8368998 original size:41 final size:41
Alignment explanation
Indices: 8368909--8368988 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
8368899 ACGTTAAAAT
*
8368909 AATAATATATATAATTTATAAAAGTAAAATATTTATTTAAA
1 AATAATATATATAATTTATAAAAGCAAAATATTTATTTAAA
8368950 AATAATATATATAATTTATAAAAGCAAAATATTTATTTA
1 AATAATATATATAATTTATAAAAGCAAAATATTTATTTA
8368989 TTAAAAATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (41 bp):
AATAATATATATAATTTATAAAAGCAAAATATTTATTTAAA
Found at i:8369209 original size:22 final size:22
Alignment explanation
Indices: 8369182--8369233 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
8369172 TAGAAATAGA
* *
8369182 ATAAAATTGTATTAAATAAT-G
1 ATAAAATAGCATTAAATAATGG
*
8369203 ACTAAAATAGCATTTAATAATGG
1 A-TAAAATAGCATTAAATAATGG
8369226 ATAAAATA
1 ATAAAATA
8369234 AAAGGAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.33
Consensus pattern (22 bp):
ATAAAATAGCATTAAATAATGG
Found at i:8370856 original size:3 final size:3
Alignment explanation
Indices: 8370850--8370897 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
8370840 TTTTATTTAG
*
8370850 TAA TAA TAG T-A TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8370895 TAA
1 TAA
8370898 AAGTAATCTG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 1 0.02
3 37 0.90
4 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8371292 original size:73 final size:73
Alignment explanation
Indices: 8371063--8371385 Score: 610
Period size: 73 Copynumber: 4.4 Consensus size: 73
8371053 TCTTTCACTA
*
8371063 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGACGGCTTTTTGAAAACA
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
8371128 TCATGCAC
66 TCATGCAC
* *
8371136 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAAGCTCCCGAAGGCTTTTTGAAAAC
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGAT-CAAAAAGCTCCCGAAGGCTTTTTGAAAAC
8371201 ATCATGCAC
65 ATCATGCAC
8371210 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
8371275 TCATGCAC
66 TCATGCAC
8371283 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
8371348 TCATGCAC
66 TCATGCAC
8371356 TGTAGGTCTTACAGATGACCCTGAGGCTTT
1 TGTAGGTCTTACAGATGACCCTGAGGCTTT
8371386 TTGAAAACAT
Statistics
Matches: 244, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
73 174 0.71
74 70 0.29
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (73 bp):
TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
TCATGCAC
Found at i:8371401 original size:47 final size:47
Alignment explanation
Indices: 8371332--8371432 Score: 193
Period size: 47 Copynumber: 2.1 Consensus size: 47
8371322 AAGCTCCCGA
8371332 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
*
8371379 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTG
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
8371426 AGGCTTT
1 AGGCTTT
8371433 AAGATCAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (47 bp):
AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
Found at i:8371421 original size:120 final size:120
Alignment explanation
Indices: 8371259--8371505 Score: 458
Period size: 120 Copynumber: 2.1 Consensus size: 120
8371249 AAGCTCCCGA
8371259 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
8371324 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
*
8371379 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
* *
8371444 GCTCCTGAAGGCTTTTTGAAAACATCATGCATTGTAGGTCTTACAGATGACCCTG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
*
8371499 AGTCTTT
1 AGGCTTT
8371506 AAGATCAAAA
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 123 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (120 bp):
AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
Found at i:8371456 original size:73 final size:73
Alignment explanation
Indices: 8371379--8371785 Score: 706
Period size: 73 Copynumber: 5.6 Consensus size: 73
8371369 GATGACCCTG
*
8371379 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
*
8371444 GCTCCTGA
66 GCTCCCGA
* *
8371452 AGGCTTTTTGAAAACATCATGCATTGTAGGTCTTACAGATGACCCTGAGTCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATC-AAAA
*
8371517 AGCTACCGA
65 AGCTCCCGA
*
8371526 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
8371591 GCTCCCGA
66 GCTCCCGA
* *
8371599 AGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
8371664 GCTCCCGA
66 GCTCCCGA
*
8371672 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
8371737 GCTCCCGA
66 GCTCCCGA
* *
8371745 AGGCTTTTTGAAAACATCATGCACTATAGGTCTTATAGATG
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATG
8371786 TTGGAAATAG
Statistics
Matches: 316, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
73 248 0.78
74 68 0.22
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (73 bp):
AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
GCTCCCGA
Found at i:8371515 original size:193 final size:194
Alignment explanation
Indices: 8371186--8371576 Score: 730
Period size: 193 Copynumber: 2.0 Consensus size: 194
8371176 AAGCTCCCGA
8371186 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
8371251 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
*
8371316 ATC-AAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
131 ATCAAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
*
8371379 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
* * *
8371444 GCTCCTGAAGGCTTTTTGAAAACATCATGCATTGTAGGTCTTACAGATGACCCTGAGTCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
8371509 ATCAAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
131 ATCAAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
8371573 AGGC
1 AGGC
8371577 ATTAAGATCA
Statistics
Matches: 192, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
193 129 0.67
194 63 0.33
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (194 bp):
AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
ATCAAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTG
Found at i:8371588 original size:267 final size:267
Alignment explanation
Indices: 8371113--8371652 Score: 974
Period size: 267 Copynumber: 2.0 Consensus size: 267
8371103 AGCTCCCGAC
8371113 GGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAA
1 GGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAA
8371178 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
*
8371243 ATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAG
131 ATCAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAG
* * *
8371308 GCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATG
196 GCATTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATG
8371373 ACCCTGA
261 ACCCTGA
* * *
8371380 GGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTGAGGCTTTAAGAT-CAAAAA
1 GGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAA
* * *
8371444 GCTCCTGAAGGCTTTTTGAAAACATCATGCATTGTAGGTCTTACAGATGACCCTGAGTCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
8371509 ATCAAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGA
131 ATC-AAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGA
8371574 GGCATTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGAT
195 GGCATTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGAT
8371639 GACCCTGA
260 GACCCTGA
8371647 GGCTTT
1 GGCTTT
8371653 AAGATCAAAA
Statistics
Matches: 262, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
266 70 0.27
267 192 0.73
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (267 bp):
GGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAA
GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
ATCAAAAAGCTACCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAG
GCATTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATG
ACCCTGA
Found at i:8371646 original size:147 final size:146
Alignment explanation
Indices: 8371379--8371785 Score: 706
Period size: 147 Copynumber: 2.8 Consensus size: 146
8371369 GATGACCCTG
*
8371379 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTATAGATGACCCTGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
* * *
8371444 GCTCCTGAAGGCTTTTTGAAAACATCATGCATTGTAGGTCTTACAGATGACCCTGAGTCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
8371509 ATCAAAAAAGCTACCGA
131 ATC-AAAAAGCTACCGA
*
8371526 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
* *
8371591 GCTCCCGAAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
*
8371656 ATCAAAAAGCTCCCGA
131 ATCAAAAAGCTACCGA
*
8371672 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTTAAGATCAAAAA
1 AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
* *
8371737 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTATAGGTCTTATAGATG
66 GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATG
8371786 TTGGAAATAG
Statistics
Matches: 246, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
146 120 0.49
147 126 0.51
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (146 bp):
AGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAA
GCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAG
ATCAAAAAGCTACCGA
Found at i:8371683 original size:340 final size:340
Alignment explanation
Indices: 8371063--8371725 Score: 1218
Period size: 340 Copynumber: 1.9 Consensus size: 340
8371053 TCTTTCACTA
*
8371063 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGACGGCTTTTTGAAAACA
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
*
8371128 TCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAAGCTCCCGAAGGCTTT
66 TCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAAGCTACCGAAGGCTTT
*
8371193 TTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCG
131 TTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAAGCTCCCG
* *
8371258 AAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAA
196 AAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAGATCAAAA
*
8371323 AGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTTT
261 AGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTTTT
8371388 GAAAACATCATGCAC
326 GAAAACATCATGCAC
* *
8371403 TGTAGGTCTTATAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCTGAAGGCTTTTTGAAAACA
1 TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
* * * *
8371468 TCATGCATTGTAGGTCTTACAGATGACCCTGAGTCTTTAAGATCAAAAAAGCTACCGAAGGCTTT
66 TCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAAGCTACCGAAGGCTTT
8371533 TTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAAGCTCCCG
131 TTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAAGCTCCCG
8371598 AAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAGATCAAAA
196 AAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAGATCAAAA
8371663 AGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTT
261 AGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTT
8371726 AAGATCAAAA
Statistics
Matches: 311, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
340 311 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (340 bp):
TGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTTTTTGAAAACA
TCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAAATAAAAAAAGCTACCGAAGGCTTT
TTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCATTAAGATCAAAAAGCTCCCG
AAGGCTTTTTGAAAACATCATACACTGTAGATCTTACAGATGACCCTGAGGCTTTAAGATCAAAA
AGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCAGAGGCTTTTT
GAAAACATCATGCAC
Found at i:8386508 original size:21 final size:24
Alignment explanation
Indices: 8386467--8386523 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
8386457 TGGTGCAGAG
*
8386467 GGAATCGA-TCCCCCTCATGAA-A
1 GGAACCGATTCCCCCTCATGAAGA
*
8386489 -GAACCGATTCCCCCT-TTGAAGA
1 GGAACCGATTCCCCCTCATGAAGA
*
8386511 GGAACTGATTCCC
1 GGAACCGATTCCC
8386524 TCCACAGGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 10 0.34
22 8 0.28
23 11 0.38
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (24 bp):
GGAACCGATTCCCCCTCATGAAGA
Found at i:8386947 original size:24 final size:24
Alignment explanation
Indices: 8386909--8386956 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
8386899 AGAATTTCCC
*
8386909 AAAAAATTTTAAATTTTCGAAATTA
1 AAAAAATGTTAAATTTTC-AAATTA
8386934 AAAAAATGTT-AATTTTCAAATTA
1 AAAAAATGTTAAATTTTCAAATTA
8386957 TTGTGTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 7 0.32
25 9 0.41
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
AAAAAATGTTAAATTTTCAAATTA
Found at i:8391863 original size:21 final size:21
Alignment explanation
Indices: 8391839--8391904 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
8391829 AAAACGTTAA
8391839 AAAATAATATTTATAATTTAT
1 AAAATAATATTTATAATTTAT
*
8391860 AAAAGTAAAATATT-T-ATTTA-
1 AAAA-TAATAT-TTATAATTTAT
*
8391880 AAAATAATATATATAATTTAT
1 AAAATAATATTTATAATTTAT
8391901 AAAA
1 AAAA
8391905 GTAAAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
18 1 0.03
19 6 0.16
20 9 0.24
21 13 0.35
22 6 0.16
23 2 0.05
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAATAATATTTATAATTTAT
Found at i:8391871 original size:24 final size:24
Alignment explanation
Indices: 8391844--8391917 Score: 90
Period size: 24 Copynumber: 3.4 Consensus size: 24
8391834 GTTAAAAAAT
8391844 AATATTTATAATTTATAAAAGTAA
1 AATATTTATAATTTATAAAAGTAA
8391868 AATA-TT-T-ATTTA-AAAA-T--
1 AATATTTATAATTTATAAAAGTAA
*
8391885 AATATATATAATTTATAAAAGTAA
1 AATATTTATAATTTATAAAAGTAA
8391909 AATATTTAT
1 AATATTTAT
8391918 TTATTAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
19 2 0.05
20 9 0.22
21 9 0.22
22 2 0.05
23 2 0.05
24 12 0.29
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (24 bp):
AATATTTATAATTTATAAAAGTAA
Found at i:8391876 original size:17 final size:17
Alignment explanation
Indices: 8391854--8391917 Score: 56
Period size: 17 Copynumber: 3.4 Consensus size: 17
8391844 AATATTTATA
8391854 ATTTATAAAAGTAAAAT
1 ATTTATAAAAGTAAAAT
*
8391871 ATTTATTTAAAAATAATATATAT
1 ATTTA--TAAAAGT-A-A-A-AT
8391894 AATTTATAAAAGTAAAAT
1 -ATTTATAAAAGTAAAAT
8391912 ATTTAT
1 ATTTAT
8391918 TTATTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
17 11 0.29
18 2 0.05
19 7 0.18
20 2 0.05
21 2 0.05
22 7 0.18
23 2 0.05
24 5 0.13
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATTTATAAAAGTAAAAT
Found at i:8391883 original size:41 final size:41
Alignment explanation
Indices: 8391838--8391920 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
8391828 TAAAACGTTA
*
8391838 AAAAATAATATTTATAATTTATAAAAGTAAAATATTTATTT
1 AAAAATAATATATATAATTTATAAAAGTAAAATATTTATTT
8391879 AAAAATAATATATATAATTTATAAAAGTAAAATATTTATTT
1 AAAAATAATATATATAATTTATAAAAGTAAAATATTTATTT
8391920 A
1 A
8391921 TTAAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (41 bp):
AAAAATAATATATATAATTTATAAAAGTAAAATATTTATTT
Found at i:8391913 original size:20 final size:20
Alignment explanation
Indices: 8391850--8391913 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 20
8391840 AAATAATATT
8391850 TATAATTTATAAAAGTAAAA
1 TATAATTTATAAAAGTAAAA
*
8391870 TATTTATTTA-AAAA-TAATATA
1 TA-TAATTTATAAAAGTAA-A-A
8391891 TATAATTTATAAAAGTAAAA
1 TATAATTTATAAAAGTAAAA
8391911 TAT
1 TAT
8391914 TTATTTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 3 0.08
20 17 0.46
21 14 0.38
22 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
TATAATTTATAAAAGTAAAA
Found at i:8391919 original size:21 final size:21
Alignment explanation
Indices: 8391854--8391926 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
8391844 AATATTTATA
8391854 ATTTATAAAAGTAAAATATTT
1 ATTTATAAAAGTAAAATATTT
* *
8391875 ATTTA-AAAA-TAATATATATA
1 ATTTATAAAAGTAAAATAT-TT
8391895 ATTTATAAAAGTAAAATATTT
1 ATTTATAAAAGTAAAATATTT
8391916 ATTTATTAAAA
1 ATTTA-TAAAA
8391927 AAAATCAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
19 7 0.16
20 10 0.23
21 15 0.34
22 12 0.27
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
ATTTATAAAAGTAAAATATTT
Found at i:8392143 original size:22 final size:22
Alignment explanation
Indices: 8392117--8392167 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
8392107 AGAAATAGAA
* *
8392117 TAAAATTGTATTAAATAATGAC
1 TAAAATAGCATTAAATAATGAC
* *
8392139 TAAAATAGCATTTAATAATGGC
1 TAAAATAGCATTAAATAATGAC
8392161 TAAAATA
1 TAAAATA
8392168 AAAGGAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (22 bp):
TAAAATAGCATTAAATAATGAC
Found at i:8393687 original size:24 final size:24
Alignment explanation
Indices: 8393655--8393709 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
8393645 TGGCAGCTGA
* *
8393655 AGCTTGGAGGCAGCGACGGCTGGG
1 AGCTAGGAGACAGCGACGGCTGGG
* *
8393679 AGTTAGGAGACAGCGGCGGCTGGG
1 AGCTAGGAGACAGCGACGGCTGGG
8393703 AGCTAGG
1 AGCTAGG
8393710 GTTTAAAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.18, G:0.49, T:0.13
Consensus pattern (24 bp):
AGCTAGGAGACAGCGACGGCTGGG
Found at i:8393820 original size:3 final size:3
Alignment explanation
Indices: 8393814--8393866 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
8393804 TTTTATTTAG
* *
8393814 TAA TAA TAG TATA TAA T-A TATA TATA TAA TAT TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA
8393861 TAA TAA
1 TAA TAA
8393867 AAGTAATCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
2 2 0.05
3 32 0.74
4 9 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:8393839 original size:13 final size:14
Alignment explanation
Indices: 8393814--8393845 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8393804 TTTTATTTAG
8393814 TAATA-ATAGTATA
1 TAATATATAGTATA
8393827 TAATATATA-TATA
1 TAATATATAGTATA
8393840 TAATAT
1 TAATAT
8393846 TAATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 15 0.83
14 3 0.17
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (14 bp):
TAATATATAGTATA
Found at i:8394052 original size:39 final size:40
Alignment explanation
Indices: 8393994--8394072 Score: 115
Period size: 39 Copynumber: 2.0 Consensus size: 40
8393984 ACAACAAAAA
* * *
8393994 AATTGTTCATTTTGTAGTTGCAGAAAGTCCCC-AGTGTAG
1 AATTGTACATTTTGGAGTTGCAGAAAGGCCCCTAGTGTAG
*
8394033 AATTGTACATTTTGGAGTTGCATAAAGGCCCCTAGTGTAG
1 AATTGTACATTTTGGAGTTGCAGAAAGGCCCCTAGTGTAG
8394073 GTGTCAACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 28 0.80
40 7 0.20
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (40 bp):
AATTGTACATTTTGGAGTTGCAGAAAGGCCCCTAGTGTAG
Found at i:8394096 original size:2 final size:2
Alignment explanation
Indices: 8394089--8394123 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8394079 ACTATTCAGG
8394089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8394124 GGCATTTCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8394774 original size:21 final size:21
Alignment explanation
Indices: 8394745--8394797 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8394735 ATTCTGACTA
8394745 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
8394766 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
8394787 TCGCAATGCGA
1 TCGCATTGCGA
8394798 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:8394812 original size:20 final size:20
Alignment explanation
Indices: 8394787--8394860 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
8394777 TTTTCCTAAT
8394787 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
8394807 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
*
8394828 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
*
8394848 TCGCATTGCGAAT
1 TCGCAATGCGAAT
8394861 CTGACTATCG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:8394833 original size:41 final size:40
Alignment explanation
Indices: 8394787--8394878 Score: 121
Period size: 41 Copynumber: 2.3 Consensus size: 40
8394777 TTTTCCTAAT
*
8394787 TCGCAATGCGAATACGTAAATCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCT-GAAAA
* ** **
8394828 TCGCAATGCGATTACGTAAATCGCATTGCGAATCTGACTA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
8394868 TCGCAATGCGA
1 TCGCAATGCGA
8394879 TTTACATAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
40 14 0.31
41 31 0.69
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
Found at i:8395080 original size:22 final size:22
Alignment explanation
Indices: 8395055--8395115 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 22
8395045 GCGACATCCA
8395055 TCCCCATCTCCGACGAAATCAG
1 TCCCCATCTCCGACGAAATCAG
8395077 TCCCCA----CGACGATAA-CAG
1 TCCCCATCTCCGACGA-AATCAG
* *
8395095 TCTCCATCTCCGGCGAAATCA
1 TCCCCATCTCCGACGAAATCA
8395116 TTCACGGTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
18 14 0.45
19 2 0.06
21 2 0.06
22 13 0.42
ACGTcount: A:0.28, C:0.39, G:0.15, T:0.18
Consensus pattern (22 bp):
TCCCCATCTCCGACGAAATCAG
Found at i:8395472 original size:20 final size:20
Alignment explanation
Indices: 8395447--8395495 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
8395437 CAACGAGTGA
8395447 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
8395467 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
8395487 ATCGCAACG
1 ATCGCAACG
8395496 AGAGAATCGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:8395587 original size:20 final size:20
Alignment explanation
Indices: 8395539--8395588 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
8395529 CGATTCTTGC
**
8395539 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
8395559 GTTGCGATTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
8395579 GTTGCGATTT
1 GTTGCGATTT
8395589 AAAGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.14, G:0.24, T:0.50
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:8395596 original size:20 final size:20
Alignment explanation
Indices: 8395553--8395596 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
8395543 CGATAGTCAT
** *
8395553 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTAAAG
8395573 TTTCGTGTTGCGATTTAAAG
1 TTTCGTGTTGCGATTTAAAG
8395593 TTTC
1 TTTC
8395597 AGAAACTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTAAAG
Found at i:8397480 original size:20 final size:20
Alignment explanation
Indices: 8397455--8397558 Score: 121
Period size: 20 Copynumber: 5.5 Consensus size: 20
8397445 AGAATAGTTT
*
8397455 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATACGAAAATG
8397475 ACTATCGCAATACGAAAATG
1 ACTATCGCAATACGAAAATG
*
8397495 ACTATCGC-A-ACG-AGA-G
1 ACTATCGCAATACGAAAATG
*
8397511 A--ATCGCAATGCGAAAATG
1 ACTATCGCAATACGAAAATG
**
8397529 ACTATCGCAATACGAATTTG
1 ACTATCGCAATACGAAAATG
8397549 ACTATCGCAA
1 ACTATCGCAA
8397559 CAAAAGAATC
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.07
15 1 0.01
16 4 0.06
17 4 0.06
18 5 0.07
19 1 0.01
20 51 0.72
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.20
Consensus pattern (20 bp):
ACTATCGCAATACGAAAATG
Found at i:8397540 original size:54 final size:54
Alignment explanation
Indices: 8397458--8397579 Score: 208
Period size: 54 Copynumber: 2.3 Consensus size: 54
8397448 ATAGTTTACT
* *
8397458 ATCGCAATGCGAAAATGACTATCGCAATACGAAAATGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAAATGACTATCGCAATACGAAAATGACTATCGCAACAAAAGA
**
8397512 ATCGCAATGCGAAAATGACTATCGCAATACGAATTTGACTATCGCAACAAAAGA
1 ATCGCAATGCGAAAATGACTATCGCAATACGAAAATGACTATCGCAACAAAAGA
8397566 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
8397580 TAAAAATCGC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (54 bp):
ATCGCAATGCGAAAATGACTATCGCAATACGAAAATGACTATCGCAACAAAAGA
Found at i:8397630 original size:20 final size:20
Alignment explanation
Indices: 8397605--8397651 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8397595 GATTCTCTCG
8397605 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
8397625 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
8397645 TTGCGAT
1 TTGCGAT
8397652 TTTGTTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:8397682 original size:33 final size:34
Alignment explanation
Indices: 8397628--8397721 Score: 118
Period size: 33 Copynumber: 2.8 Consensus size: 34
8397618 ATTCGCATTG
* *
8397628 CGATAGTCATTTTCGCGTTGCGATTTTGTTGTTA
1 CGATAGTCATTTTCGCGTTGCGATTTTCTCGTTA
** * * *
8397662 CGATTTTCA-TTTCGCATTGCGATTCTCTCGTTG
1 CGATAGTCATTTTCGCGTTGCGATTTTCTCGTTA
8397695 CGATAGTCATTTTCGCGTTGCGATTTT
1 CGATAGTCATTTTCGCGTTGCGATTTT
8397722 AAGTTTCAGA
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
33 26 0.54
34 22 0.46
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.46
Consensus pattern (34 bp):
CGATAGTCATTTTCGCGTTGCGATTTTCTCGTTA
Found at i:8398243 original size:18 final size:19
Alignment explanation
Indices: 8398204--8398245 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
8398194 CTCACCTGTC
8398204 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
8398225 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
8398243 ATC
1 ATC
8398246 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:8398299 original size:42 final size:42
Alignment explanation
Indices: 8398199--8398309 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
8398189 CCCGACTCAC
* * * *
8398199 CTGTCATCGTTCAAGAGGCCTCC-CCTATCGTTCAAGAGGCCC
1 CTGTCATCGTTCAAGAGTCC-CCTCCCACCGTTCAAGAGGCCA
* ** *
8398241 CTATCATCCCTCAAGAGTCCCCTCCCACCGTTCAATAGGCCA
1 CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
*
8398283 CTGTCATCGTTGAAGAGGT-CCCTCCCA
1 CTGTCATCGTTCAAGA-GTCCCCTCCCA
8398310 ACATTCTAGA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.04
42 51 0.93
43 2 0.04
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (42 bp):
CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
Found at i:8399682 original size:14 final size:14
Alignment explanation
Indices: 8399663--8399698 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8399653 ATTGTTTAAT
8399663 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
8399677 TGATTTGTAAACGT
1 TGATTTGTAAAAGA
8399691 TGATTTGT
1 TGATTTGT
8399699 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:8399921 original size:19 final size:19
Alignment explanation
Indices: 8399856--8399942 Score: 103
Period size: 19 Copynumber: 4.8 Consensus size: 19
8399846 TCGCAACAAG
* *
8399856 TTTCGCGTTGCGATTTTTA
1 TTTCGCATTGCGATTTTCA
8399875 TTTTCGCATTGCGA--TTCA
1 -TTTCGCATTGCGATTTTCA
*
8399893 -CTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
8399909 TTTCGCATTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
8399928 TTTCGCATTGCGATT
1 TTTCGCATTGCGATT
8399943 CTCTCGTTGC
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
14 6 0.10
16 7 0.12
17 3 0.05
18 3 0.05
19 27 0.47
20 12 0.21
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:8399943 original size:52 final size:54
Alignment explanation
Indices: 8399856--8399975 Score: 190
Period size: 52 Copynumber: 2.3 Consensus size: 54
8399846 TCGCAACAAG
* *
8399856 TTTCGCGTTGCGATTTTTATTTTCGCATTGCGATTCACTCGTTGCGATTTTCA-
1 TTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATTGTCAT
* *
8399909 TTTCGCATTGCGATTTTCA-TTTCGCATTGCGATTCTCTCGTTGCGATTGTCAT
1 TTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATTGTCAT
8399962 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
8399976 AGTCAATTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 31 0.51
53 30 0.49
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (54 bp):
TTTCGCGTTGCGATTTTCATTTTCGCATTGCGATTCACTCGTTGCGATTGTCAT
Found at i:8399970 original size:20 final size:19
Alignment explanation
Indices: 8399895--8400036 Score: 107
Period size: 20 Copynumber: 7.5 Consensus size: 19
8399885 GCGATTCACT
*
8399895 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTGTCATTTCG
* *
8399914 CATTGCGATTTTCATTTCG
1 CGTTGCGATTGTCATTTCG
* *
8399933 CATTGCGA-T-TC---TCT
1 CGTTGCGATTGTCATTTCG
8399947 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCA-TTTCG
* *
8399967 CGTTGCGATAGTCAATTC-
1 CGTTGCGATTGTCATTTCG
*
8399985 CGAATTGCGATAGTCATTTCCG
1 CG--TTGCGATTGTCATTT-CG
* *
8400007 TGTTGCGATAGTCATATTCG
1 CGTTGCGATTGTCAT-TTCG
8400027 CGTTGCGATT
1 CGTTGCGATT
8400037 TCCGCGTTGC
Statistics
Matches: 102, Mismatches: 10, Indels: 21
0.77 0.08 0.16
Matches are distributed among these distances:
14 9 0.09
15 1 0.01
16 2 0.02
17 2 0.02
18 3 0.03
19 29 0.28
20 52 0.51
21 3 0.03
22 1 0.01
ACGTcount: A:0.16, C:0.21, G:0.22, T:0.41
Consensus pattern (19 bp):
CGTTGCGATTGTCATTTCG
Found at i:8399994 original size:40 final size:41
Alignment explanation
Indices: 8399949--8400025 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
8399939 GATTCTCTCG
* *
8399949 TTGCGATTGTCATTTTCGCGTTGCGATAGTCA-ATTCCGAA
1 TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCCGAA
*
8399989 TTGCGATAGTCATTTCCGTGTTGCGATAGTCATATTC
1 TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTC
8400026 GCGTTGCGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.39
Consensus pattern (41 bp):
TTGCGATAGTCATTTCCGCGTTGCGATAGTCATATTCCGAA
Found at i:8402503 original size:24 final size:24
Alignment explanation
Indices: 8402469--8402522 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8402459 CTGAAAAATC
8402469 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
8402493 ATCAAAGTCCGGGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
8402517 ATCAAA
1 ATCAAA
8402523 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Done.