Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11160956
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 42 of 55
Found at i:8403396 original size:20 final size:20
Alignment explanation
Indices: 8403373--8403431 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
8403363 TTGCGATAGT
* *
8403373 CAGAATCTCGTTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
8403393 CAGATTCGCATTGCGATTTA
1 CAGAATCGCATTGCGATTTA
*
8403413 C-GTAATCGCTTTGCGATTT
1 CAG-AATCGCATTGCGATTT
8403432 TTCAAATTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
CAGAATCGCATTGCGATTTA
Found at i:8403452 original size:41 final size:40
Alignment explanation
Indices: 8403383--8403469 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
8403373 CAGAATCTCG
* *
8403383 TTGCGATTTACAGATTCGCATTGCGATTTACGTAATCGCT
1 TTGCGATTTACAAATTCGCATTGCGATTTACGTAATCGCA
* * * *
8403423 TTGCGATTTTTCAAATTCGCGTTGTGATTTACGTATTCGCA
1 TTGCGA-TTTACAAATTCGCATTGCGATTTACGTAATCGCA
8403464 TTGCGA
1 TTGCGA
8403470 ATTAGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 6 0.15
41 34 0.85
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (40 bp):
TTGCGATTTACAAATTCGCATTGCGATTTACGTAATCGCA
Found at i:8403462 original size:20 final size:20
Alignment explanation
Indices: 8403381--8403469 Score: 81
Period size: 20 Copynumber: 4.4 Consensus size: 20
8403371 GTCAGAATCT
8403381 CGTTGCGATTTACAG-ATTCG
1 CGTTGCGATTTAC-GTATTCG
* *
8403401 CATTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
* * **
8403421 CTTTGCGATTTTTCAAATTCG
1 CGTTGCGA-TTTACGTATTCG
*
8403442 CGTTGTGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
8403462 CATTGCGA
1 CGTTGCGA
8403470 ATTAGAAAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
19 1 0.02
20 38 0.72
21 14 0.26
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (20 bp):
CGTTGCGATTTACGTATTCG
Found at i:8403490 original size:21 final size:21
Alignment explanation
Indices: 8403466--8403511 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
8403456 TATTCGCATT
8403466 GCGAATTAGAAAAATCGCAAC
1 GCGAATTAGAAAAATCGCAAC
* ** *
8403487 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGAAAAATCGCAAC
8403508 GCGA
1 GCGA
8403512 TAGTCAGAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTAGAAAAATCGCAAC
Found at i:8407055 original size:13 final size:14
Alignment explanation
Indices: 8407038--8407095 Score: 59
Period size: 13 Copynumber: 4.3 Consensus size: 14
8407028 AATAAACATA
8407038 ATAATTAATAATAT
1 ATAATTAATAATAT
*
8407052 -TAATTATTAA-AT
1 ATAATTAATAATAT
*
8407064 ATAATAAATAAT-T
1 ATAATTAATAATAT
*
8407077 AAAATATAATAATAT
1 ATAAT-TAATAATAT
8407092 ATAA
1 ATAA
8407096 ATATAGTAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
12 2 0.06
13 22 0.65
14 6 0.18
15 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAATTAATAATAT
Found at i:8407077 original size:17 final size:17
Alignment explanation
Indices: 8407017--8407100 Score: 65
Period size: 17 Copynumber: 5.2 Consensus size: 17
8407007 AAAATTATAT
*
8407017 TATAATAAATAAATAAA
1 TATAATAAATAATTAAA
* *
8407034 CATAATAATTAA-T-AA
1 TATAATAAATAATTAAA
*
8407049 TAT--T-AATTATTAAA
1 TATAATAAATAATTAAA
8407063 TATAATAAATAATTAAAA
1 TATAATAAATAATT-AAA
8407081 TATAAT-AAT-ATATAAA
1 TATAATAAATAAT-TAAA
8407097 TATA
1 TATA
8407101 GTAATTAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
12 3 0.06
13 2 0.04
14 5 0.09
15 4 0.07
16 11 0.20
17 20 0.37
18 9 0.17
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAATAAATAATTAAA
Found at i:8407099 original size:16 final size:16
Alignment explanation
Indices: 8407013--8407141 Score: 62
Period size: 16 Copynumber: 8.3 Consensus size: 16
8407003 AAACAAAATT
* *
8407013 ATATTATAATAAATAA
1 ATATAATAATATATAA
* *
8407029 ATAAACATAATA-ATTA
1 ATATA-ATAATATATAA
*
8407045 ATAATATTAAT-TATTAA
1 AT-ATAATAATATA-TAA
8407062 ATATAATAA-ATAATTAAA
1 ATATAATAATAT-A-T-AA
8407080 ATATAATAATATATAA
1 ATATAATAATATATAA
*
8407096 ATATAGTAAT-TA-AA
1 ATATAATAATATATAA
* *
8407110 ATAT-ATATTTTATAA
1 ATATAATAATATATAA
8407125 A-A-AATAAT-TAT-A
1 ATATAATAATATATAA
8407137 ATATA
1 ATATA
8407142 TTTTGTAAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 28
0.70 0.09 0.22
Matches are distributed among these distances:
12 2 0.02
13 7 0.08
14 14 0.16
15 5 0.06
16 31 0.35
17 16 0.18
18 12 0.13
19 2 0.02
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.39
Consensus pattern (16 bp):
ATATAATAATATATAA
Found at i:8407106 original size:50 final size:44
Alignment explanation
Indices: 8407017--8407114 Score: 108
Period size: 46 Copynumber: 2.1 Consensus size: 44
8407007 AAAATTATAT
8407017 TATAATAAATAAATAAACATAATAATTAATAATATTAATTATTAAA
1 TATAATAAATAAATAAACATAATAATTAATAATATTAATTA--AAA
* *
8407063 TATAATAAATAATTAAAATATAATAA-TATATAAATATAGTAATTAAAA
1 TATAATAAATAAAT-AAACATAATAATTA-AT-AATAT--TAATTAAAA
8407111 TATA
1 TATA
8407115 TATTTTATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
46 15 0.33
47 12 0.27
48 12 0.27
50 6 0.13
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (44 bp):
TATAATAAATAAATAAACATAATAATTAATAATATTAATTAAAA
Found at i:8407250 original size:14 final size:14
Alignment explanation
Indices: 8407227--8407259 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
8407217 TATTAAATAT
8407227 AATA-AATAATTAA
1 AATATAATAATTAA
8407240 AATATAATAATTAA
1 AATATAATAATTAA
8407254 AATATA
1 AATATA
8407260 TATTTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AATATAATAATTAA
Found at i:8407286 original size:18 final size:18
Alignment explanation
Indices: 8407218--8407284 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
8407208 ATTATTTTAT
*
8407218 ATTA-AATATAATAAATA
1 ATTATAATATAATAAAAA
*
8407235 ATTAAAATATAATAATTAAA
1 ATTATAATATAATAA--AAA
* * *
8407255 ATATATATTTTATTAAAAA
1 AT-TATAATATAATAAAAA
8407274 ATTATAATATA
1 ATTATAATATA
8407285 TTTTGAAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
17 4 0.10
18 17 0.44
19 5 0.13
20 4 0.10
21 9 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTATAATATAATAAAAA
Found at i:8409725 original size:117 final size:116
Alignment explanation
Indices: 8409520--8409747 Score: 377
Period size: 117 Copynumber: 2.0 Consensus size: 116
8409510 AAAAAAACTC
*
8409520 GTTCAAAAAGTATTCCCAAACGAAGTCTAATCCTTTTTTATCCAAAGTGTTTTTAACCAATAAAT
1 GTTCAAAAAGTATTCCCAAACGAAGTCTAATCCTTTTTTATCCAAAGTGATTTTAACCAATAAAT
* *
8409585 CCTAAAAAGTATGGTTTTTTTATTAATCTAGGGAGATGACTGGTAGCATTT
66 CCAAAAAAGTATGGTTTTTTTATTAATCCAGGGAGATGACTGGTAGCATTT
* *
8409636 GTTCAAAATGTATTCCCAAACGAAGTCTAATCTTTTTTTTATCCAAAGTGATTTTAACCAATAAA
1 GTTCAAAAAGTATTCCCAAACGAAGTCTAATC-CTTTTTTATCCAAAGTGATTTTAACCAATAAA
*
8409701 TCCAAAAAAGTTAT-GTTTTTTTATTAATCCAGGGAGATTACTGGTAG
65 TCCAAAAAAG-TATGGTTTTTTTATTAATCCAGGGAGATGACTGGTAG
8409748 TATGTGTTAT
Statistics
Matches: 104, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
116 31 0.30
117 70 0.67
118 3 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (116 bp):
GTTCAAAAAGTATTCCCAAACGAAGTCTAATCCTTTTTTATCCAAAGTGATTTTAACCAATAAAT
CCAAAAAAGTATGGTTTTTTTATTAATCCAGGGAGATGACTGGTAGCATTT
Found at i:8417909 original size:43 final size:43
Alignment explanation
Indices: 8417850--8417933 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
8417840 TTTTGAGGCG
8417850 TTTTTTTTTACCTTTAACAGCGTTTATAAGCGCCGTTAAAAGT
1 TTTTTTTTTACCTTTAACAGCGTTTATAAGCGCCGTTAAAAGT
8417893 TTTTTTTTTACCTTTAACAGCGTTTATAAGCGCCGTTAAAA
1 TTTTTTTTTACCTTTAACAGCGTTTATAAGCGCCGTTAAAA
8417934 ACACATGCGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (43 bp):
TTTTTTTTTACCTTTAACAGCGTTTATAAGCGCCGTTAAAAGT
Found at i:8418181 original size:42 final size:43
Alignment explanation
Indices: 8418036--8418207 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 43
8418026 TAGGTATTGA
*
8418036 TCACACAAACGCCGCAATAGGTGTTGATATTTAGCGGTGTTTT
1 TCACACAAACGCCGCAATAGGTGTTGATGTTTAGCGGTGTTTT
* * *
8418079 TTAGACAAACGCCGCAATAGGT-TATGATGTTTAGCGGCGTTTT
1 TCACACAAACGCCGCAATAGGTGT-TGATGTTTAGCGGTGTTTT
* * * *
8418122 TCTCATAAACGCCGCAGTAGGTGTTGATGTTTTGCGGTG-TTT
1 TCACACAAACGCCGCAATAGGTGTTGATGTTTAGCGGTGTTTT
* * * * * *
8418164 TCCCACAAACGCTGCAGTAGGTATTGATGTTTTGCGGTATTTT
1 TCACACAAACGCCGCAATAGGTGTTGATGTTTAGCGGTGTTTT
8418207 T
1 T
8418208 GCTAAAAACG
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 38 0.35
43 71 0.65
44 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.35
Consensus pattern (43 bp):
TCACACAAACGCCGCAATAGGTGTTGATGTTTAGCGGTGTTTT
Found at i:8418217 original size:85 final size:86
Alignment explanation
Indices: 8418042--8418220 Score: 211
Period size: 85 Copynumber: 2.1 Consensus size: 86
8418032 TTGATCACAC
* *
8418042 AAACGCCGCAATAGGTGTTGATATTTAGCGGTGTTTTTTAGACAAACGCCGCAATAGGTTATGAT
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGTGTTTTTCACACAAACGCCGCAATAGGTTATGAT
* *
8418107 GTTTAGCGGCGTTTTTCTCAT
66 GTTTAGCGGCATTTTTCTCAA
* * * * * *
8418128 AAACGCCGCAGTAGGTGTTGATGTTTTGCGGTG-TTTTCCCACAAACGCTGCAGTAGG-TATTGA
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGTGTTTTTCACACAAACGCCGCAATAGGTTA-TGA
* *
8418191 TGTTTTGCGGTATTTTTGCT-AA
65 TGTTTAGCGGCATTTTT-CTCAA
8418213 AAACGCCG
1 AAACGCCG
8418221 GTAAAGGTAT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 45 0.57
86 32 0.41
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (86 bp):
AAACGCCGCAATAGGTGTTGATATTTAGCGGTGTTTTTCACACAAACGCCGCAATAGGTTATGAT
GTTTAGCGGCATTTTTCTCAA
Found at i:8418674 original size:23 final size:21
Alignment explanation
Indices: 8418619--8418678 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
8418609 CTGCTGATAT
8418619 GTTGCTTCTCTCTGTGCTACA
1 GTTGCTTCTCTCTGTGCTACA
* * *
8418640 GCTGCTTCTCTCTGTGCTGCC
1 GTTGCTTCTCTCTGTGCTACA
* *
8418661 GTTGCTTCTTTCTCTGCT
1 GTTGCTTCTCTCTGTGCT
8418679 TTCGCTGTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.03, C:0.32, G:0.20, T:0.45
Consensus pattern (21 bp):
GTTGCTTCTCTCTGTGCTACA
Found at i:8427033 original size:189 final size:188
Alignment explanation
Indices: 8426624--8427060 Score: 477
Period size: 189 Copynumber: 2.3 Consensus size: 188
8426614 TGTTTCTTGC
** * * *
8426624 CAAAACGCCACTAATGTACGAATAATTTGCGGCATTTGTTACTAAAACGTCGCTATATGTGAACC
1 CAAAACGCCACTAAAATACGAATTATTTGCGGCATTTGTTACAAAAACGCCGCTATATGTGAACC
** * * * *
8426689 ATATTACGATGTTTTTGTCAAAACGCCGCTAAAGTTCTAATTTGTGCGGCGTTTATTAAAAACGC
66 ATATTACGACATTTTTGTCAAAACGCCACTAAAGTACTAATCTGTGCGGCATTTATTAAAAACGC
* *
8426754 ACCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATATACGGCGTTTTTTTGT
131 ACCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATATACGACGTTTTTTTGA
* * ** * *
8426812 CAAAACACCACTAATGATTTGAA-TATTTTGCGGCATTTGTTACCAAAACACCGCTATATGTGAA
1 CAAAACGCCACTAA-AATACGAATTA-TTTGCGGCATTTGTTACAAAAACGCCGCTATATGTGAA
* * ** * * ** *
8426876 CCCTCTTGTGGCATTTTT-TCAAAACGTCACTGTAGTACTAATCTGTTGTGGCATTTATTAAAAA
64 CCATATTACGACATTTTTGTCAAAACGCCACTAAAGTACTAATCTG-TGCGGCATTTATT-AAAA
* *** * * * *
8426940 ATGCTGTTATATGTCTAAAGTTAATGGCGTTTAAATAAAGAACATTTACGACGTTTTTTTGA
127 ACGCACCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATATACGACGTTTTTTTGA
8427002 CAAAACGCCACTAAAATACGAATTATTTGCGGC-TTTGTGT-CAAAAACGCCGCTATATGT
1 CAAAACGCCACTAAAATACGAATTATTTGCGGCATTTGT-TACAAAAACGCCGCTATATGT
8427061 ATAAAGTTAG
Statistics
Matches: 203, Mismatches: 40, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
188 57 0.28
189 75 0.37
190 71 0.35
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (188 bp):
CAAAACGCCACTAAAATACGAATTATTTGCGGCATTTGTTACAAAAACGCCGCTATATGTGAACC
ATATTACGACATTTTTGTCAAAACGCCACTAAAGTACTAATCTGTGCGGCATTTATTAAAAACGC
ACCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATATACGACGTTTTTTTGA
Found at i:8428533 original size:303 final size:301
Alignment explanation
Indices: 8427929--8428533 Score: 1192
Period size: 301 Copynumber: 2.0 Consensus size: 301
8427919 AGGATAGATA
8427929 CTGCTTTTGCAATTGAAGATTCTTTCAACGCCACAGAGTTACCCAATTCGGTTCTAAACATCGAG
1 CTGCTTTTGCAATTGAAGATTCTTTCAACGCCACAGAGTTACCCAATTCGGTTCTAAACATCGAG
8427994 TATTTATCCACTCCTCTATCATCATTCTCAATAAGCTTCGAAGATCCTACATGCGTACGATCTAT
66 TATTTATCCACTCCTCTATCATCATTCTCAATAAGCTTCGAAGATCCTACATGCGTACGATCTAT
8428059 GAAATTTTATGACCATAGAAAAATAGTATATAGGGCTTAAAGATTTATAAATTATTACCTTCAAG
131 GAAATTTTATGACCATAGAAAAATAGTATATAGGGCTTAAAGATTTATAAATTATTACCTTCAAG
8428124 TAGGAGATCGGCCATGGAAGGGTATGGAGCAATAGAATTTTCTTTCGGGTCATCATCGAGTTTCG
196 TAGGAGATCGGCCATGGAAGGGTATGGAGCAATAGAATTTTCTTTCGGGTCATCATCGAGTTTCG
8428189 ACGGCGAGATCGGACCGATAGCCTCCTAACGATAATTTGAT
261 ACGGCGAGATCGGACCGATAGCCTCCTAACGATAATTTGAT
8428230 CTGCTTTTGCAATTGAAGATTCTTTCAACGCCACAGAGTTACCCAATTCGGTTCTAAACATCGAG
1 CTGCTTTTGCAATTGAAGATTCTTTCAACGCCACAGAGTTACCCAATTCGGTTCTAAACATCGAG
8428295 TATTTATCCACTCCTCTATCATCATTCTCAATAAGCTTCGAAGATCCTACATGCGTACGATCTAT
66 TATTTATCCACTCCTCTATCATCATTCTCAATAAGCTTCGAAGATCCTACATGCGTACGATCTAT
8428360 GAAATTTTAGTGACCATAGAAAAATAGTATATAGCGGCTTAAAGATTTATAAATTATTACCTTCA
131 GAAATTTTA-TGACCATAGAAAAATAGTATATAG-GGCTTAAAGATTTATAAATTATTACCTTCA
8428425 AGTAGGAGATCGGCCATGGAAGGGTATGGAGCAATAGAATTTTCTTTCGGGTCATCATCGAGTTT
194 AGTAGGAGATCGGCCATGGAAGGGTATGGAGCAATAGAATTTTCTTTCGGGTCATCATCGAGTTT
8428490 CGACGGCGAGATCGGACCGATAGCCTCCTAACGATAATTTGAT
259 CGACGGCGAGATCGGACCGATAGCCTCCTAACGATAATTTGAT
8428533 C
1 C
8428534 CATCGTAGAG
Statistics
Matches: 302, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
301 139 0.46
302 24 0.08
303 139 0.46
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (301 bp):
CTGCTTTTGCAATTGAAGATTCTTTCAACGCCACAGAGTTACCCAATTCGGTTCTAAACATCGAG
TATTTATCCACTCCTCTATCATCATTCTCAATAAGCTTCGAAGATCCTACATGCGTACGATCTAT
GAAATTTTATGACCATAGAAAAATAGTATATAGGGCTTAAAGATTTATAAATTATTACCTTCAAG
TAGGAGATCGGCCATGGAAGGGTATGGAGCAATAGAATTTTCTTTCGGGTCATCATCGAGTTTCG
ACGGCGAGATCGGACCGATAGCCTCCTAACGATAATTTGAT
Found at i:8431052 original size:91 final size:90
Alignment explanation
Indices: 8430897--8431078 Score: 310
Period size: 91 Copynumber: 2.0 Consensus size: 90
8430887 ATTTCATAAA
* * *
8430897 ACTATTCTTAGTTTTGACTTTATTGTTAATGGAGCTGACAAATGTATTTACTCAAAAATGTTCGG
1 ACTATTCTTAGTTTTGACTTAATTGTTAATAGAACTGACAAATGTATTTACTCAAAAATGTTCGG
*
8430962 TTCTGATTGTGTAATTATTAGTCTAT
66 -TATGATTGTGTAATTATTAGTCTAT
*
8430988 ACTATTCTTAGTTTTGACTTAATTGTTAATAGAACTGACACATGTATTTACTCAAAAATGTTCGG
1 ACTATTCTTAGTTTTGACTTAATTGTTAATAGAACTGACAAATGTATTTACTCAAAAATGTTCGG
8431053 TATGATTGTGTAATTATTAGTCTAT
66 TATGATTGTGTAATTATTAGTCTAT
8431078 A
1 A
8431079 TGTGGACGAC
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
90 25 0.29
91 61 0.71
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (90 bp):
ACTATTCTTAGTTTTGACTTAATTGTTAATAGAACTGACAAATGTATTTACTCAAAAATGTTCGG
TATGATTGTGTAATTATTAGTCTAT
Found at i:8434193 original size:13 final size:14
Alignment explanation
Indices: 8434175--8434207 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8434165 AATTTCAACT
8434175 ATTATTAT-ATTAA
1 ATTATTATCATTAA
8434188 ATTATTATCATTAA
1 ATTATTATCATTAA
*
8434202 TTTATT
1 ATTATT
8434208 TAATATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTATTATCATTAA
Found at i:8436877 original size:19 final size:19
Alignment explanation
Indices: 8436853--8436889 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8436843 AAAAGAAGGT
*
8436853 TTTCAAAGTTTAGGTGTTA
1 TTTCAAAATTTAGGTGTTA
*
8436872 TTTCAAAATTTATGTGTT
1 TTTCAAAATTTAGGTGTT
8436890 TTCTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (19 bp):
TTTCAAAATTTAGGTGTTA
Found at i:8442257 original size:10 final size:10
Alignment explanation
Indices: 8442239--8442274 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8442229 TTTCATCACA
8442239 TCAAATTCTC
1 TCAAATTCTC
*
8442249 TCAATTTCTC
1 TCAAATTCTC
*
8442259 TCAACTTCTC
1 TCAAATTCTC
8442269 TCAAAT
1 TCAAAT
8442275 AGGCATATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.42
Consensus pattern (10 bp):
TCAAATTCTC
Found at i:8442340 original size:9 final size:9
Alignment explanation
Indices: 8442328--8442361 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8442318 TAATATTTTG
8442328 TATTTAATT
1 TATTTAATT
*
8442337 TATTTAA-G
1 TATTTAATT
8442345 TATTTAATT
1 TATTTAATT
8442354 TATTTAAT
1 TATTTAAT
8442362 ATTTTACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TATTTAATT
Found at i:8442367 original size:17 final size:17
Alignment explanation
Indices: 8442327--8442365 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
8442317 TTAATATTTT
8442327 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
8442344 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
8442361 -TATTT
1 GTATTT
8442366 TACTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:8442372 original size:16 final size:17
Alignment explanation
Indices: 8442327--8442372 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
8442317 TTAATATTTT
*
8442327 GTATTTAATTTATTTAA
1 GTATTTAACTTATTTAA
*
8442344 GTATTTAATTTATTTAA
1 GTATTTAACTTATTTAA
*
8442361 -TATTTTACTTAT
1 GTATTTAACTTAT
8442373 ATTTTGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (17 bp):
GTATTTAACTTATTTAA
Found at i:8450747 original size:4 final size:4
Alignment explanation
Indices: 8450746--8451430 Score: 1025
Period size: 4 Copynumber: 174.0 Consensus size: 4
8450736 AACATGCATG
* * *
8450746 CATA CATA CATA CATA CATG CATA CATA CATG CATA CATA CATG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * *
8450794 CATA CATG CATA CATA CATG CATA CATA CATG CATG CAT- -ATA TATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
8450840 CATA CATA CATA CATA CATA CATA CATA CATG CATA CATA CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * *
8450888 CATA CATA CATA CATA CATA CATG CATG CATG CATG CATG CATG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8450936 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8450984 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8451032 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8451080 CATA CATA CATA CATA CATA CATA CA-A CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8451127 CATA C--A CATA CATA C-TA C-TA C-TA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
8451170 CATA CATA CATA -ACA CATA C-TA CATA CATA CATA CAT- CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8451215 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8451263 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
8451311 CATA CATA CATA CATA CATA CATA CATA CATA CAT- CTATA CATC CATC
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA C-ATA CATA CATA
* * * * * * *
8451359 CATC CATC CATC CATA CATC CATA CATA CATC CATC CATC CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
8451407 CATA CATC CATA CATC CATA CATA
1 CATA CATA CATA CATA CATA CATA
8451431 TACATATGCA
Statistics
Matches: 640, Mismatches: 30, Indels: 22
0.92 0.04 0.03
Matches are distributed among these distances:
2 4 0.01
3 21 0.03
4 614 0.96
5 1 0.00
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:8451442 original size:6 final size:6
Alignment explanation
Indices: 8451427--8451654 Score: 115
Period size: 6 Copynumber: 36.8 Consensus size: 6
8451417 TACATCCATA
* ** **
8451427 CATATA CATATG CATATG C---TG CATACA CATATG CATACA CATATG
1 CATATG CATATG CATATG CATATG CATATG CATATG CATATG CATATG
** ** ** **
8451472 CATACA CATATG CATACA CATATG CATACA CATATG CATACACA CATATG
1 CATATG CATATG CATATG CATATG CATATG CATATG CAT--ATG CATATG
** ** *
8451522 CATACA CATATG CATACACA CATATG CATA-- CACATG CATATACG CATATG
1 CATATG CATATG CAT--ATG CATATG CATATG CATATG CATAT--G CATATG
* * *
8451572 CATATA CATATG CAAATACG CATATG CATATACG CATATG CATATA CATATG
1 CATATG CATATG C--ATATG CATATG CATAT--G CATATG CATATG CATATG
*
8451624 CATATACG CATATG CATATA CATATG CATAT
1 CATAT--G CATATG CATATG CATATG CATAT
8451655 ACACATACAC
Statistics
Matches: 162, Mismatches: 43, Indels: 34
0.68 0.18 0.14
Matches are distributed among these distances:
3 3 0.02
4 3 0.02
6 125 0.77
8 31 0.19
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (6 bp):
CATATG
Found at i:8451523 original size:26 final size:26
Alignment explanation
Indices: 8451446--8451727 Score: 224
Period size: 26 Copynumber: 10.8 Consensus size: 26
8451436 ATGCATATGC
8451446 TGCATACACATATGCAT--ACACATA
1 TGCATACACATATGCATACACACATA
8451470 TGCATACACATATGCAT--ACACATA
1 TGCATACACATATGCATACACACATA
8451494 TGCATACACATATGCATACACACATA
1 TGCATACACATATGCATACACACATA
8451520 TGCATACACATATGCATACACACATA
1 TGCATACACATATGCATACACACATA
* *
8451546 TGCATACAC--ATGCATATACGCATA
1 TGCATACACATATGCATACACACATA
* * * *
8451570 TGCATATACATATGCAAATACGCATA
1 TGCATACACATATGCATACACACATA
* *
8451596 TGCATATACGCATATGCAT--ATACATA
1 TGC--ATACACATATGCATACACACATA
* *
8451622 TGCATATACGCATATGCAT--ATACATA
1 TGC--ATACACATATGCATACACACATA
** *
8451648 TGCATATACACATACACATACATATACATA
1 TGC--ATACACATATGCATAC--ACACATA
* * * *
8451678 TGTATATACACATACATACACATACATA
1 TGCATACACATATGCATACAC--ACATA
* * *
8451706 TACATACATATATACATACACA
1 TGCATACACATATGCATACACA
8451728 TACACATACA
Statistics
Matches: 224, Mismatches: 22, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
24 62 0.28
26 108 0.48
28 45 0.20
30 9 0.04
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (26 bp):
TGCATACACATATGCATACACACATA
Found at i:8452311 original size:9 final size:8
Alignment explanation
Indices: 8452286--8456221 Score: 1074
Period size: 8 Copynumber: 483.6 Consensus size: 8
8452276 ACAGATACAG
8452286 ATACACATC
1 ATACACA-C
*
8452295 ATATACACC
1 ATACACA-C
8452304 ATACACAC
1 ATACACAC
*
8452312 ATACACAT
1 ATACACAC
* *
8452320 ACACTATAC
1 ATAC-ACAC
*
8452329 ATACACAT
1 ATACACAC
* *
8452337 ACACATACC
1 ATACACA-C
8452346 ATACACATAC
1 ATACAC--AC
*
8452356 ACTACACAT
1 A-TACACAC
*
8452365 ACACATCAC
1 ATACA-CAC
8452374 ATA-ACAC
1 ATACACAC
8452381 ATACATATCAC
1 ATAC--A-CAC
8452392 ATACACATAC
1 ATACAC--AC
* *
8452402 ACATACAC
1 ATACACAC
8452410 ATACACAC
1 ATACACAC
*
8452418 ACACACAAC
1 ATACAC-AC
* *
8452427 ACATACAC
1 ATACACAC
*
8452435 ATACACAT
1 ATACACAC
*
8452443 ACACTACAC
1 ATAC-ACAC
*
8452452 ATACACAT
1 ATACACAC
* *
8452460 ACACATAC
1 ATACACAC
* *
8452468 ACATACAC
1 ATACACAC
8452476 ATACACAC
1 ATACACAC
*
8452484 ACA-ACAC
1 ATACACAC
*
8452491 -TACACAT
1 ATACACAC
* *
8452498 ACACATAC
1 ATACACAC
* *
8452506 ACATACAC
1 ATACACAC
8452514 ATACACTAC
1 ATACAC-AC
* *
8452523 ACATACAC
1 ATACACAC
*
8452531 ATACACAT
1 ATACACAC
* *
8452539 ACACATAC
1 ATACACAC
*
8452547 ATACACAT
1 ATACACAC
* *
8452555 ACACATAAC
1 ATACA-CAC
*
8452564 ATACACAT
1 ATACACAC
*
8452572 ACACTACAC
1 ATAC-ACAC
8452581 ATACACATAC
1 ATACAC--AC
* *
8452591 ACATACAC
1 ATACACAC
*
8452599 ATACACAT
1 ATACACAC
*
8452607 ACACACAC
1 ATACACAC
8452615 ATACATACAC
1 ATAC--ACAC
*
8452625 ATACACAT
1 ATACACAC
* *
8452633 ACACATAC
1 ATACACAC
8452641 ATACACAACC
1 ATACAC-A-C
*
8452651 ATACACAT
1 ATACACAC
* *
8452659 ACACATAC
1 ATACACAC
8452667 ATACACCAC
1 ATACA-CAC
8452676 AT--ACAC
1 ATACACAC
8452682 ATACACAC
1 ATACACAC
*
8452690 ATACACAT
1 ATACACAC
*
8452698 ATACATAC
1 ATACACAC
* *
8452706 ACATACAC
1 ATACACAC
*
8452714 ATAC-CAT
1 ATACACAC
* *
8452721 ACACATAC
1 ATACACAC
*
8452729 ATAACATACC
1 AT-ACACA-C
*
8452739 ATACACAT
1 ATACACAC
*
8452747 ACACACTAC
1 ATACAC-AC
* *
8452756 ACATACAC
1 ATACACAC
8452764 ATACACA-
1 ATACACAC
* *
8452771 TTACACAT
1 ATACACAC
* *
8452779 ACATACAC
1 ATACACAC
*
8452787 ATACACAT
1 ATACACAC
* *
8452795 ACACATAAC
1 ATACA-CAC
8452804 ATACACAC
1 ATACACAC
** *
8452812 CCATACAC
1 ATACACAC
8452820 ATACACAC
1 ATACACAC
* *
8452828 ACATACAC
1 ATACACAC
*
8452836 ATACACAT
1 ATACACAC
*
8452844 ATACCATAC
1 ATA-CACAC
* *
8452853 ACATACAC
1 ATACACAC
8452861 AT--ACAC
1 ATACACAC
8452867 ATACACCAC
1 ATACA-CAC
8452876 AT--ACAC
1 ATACACAC
*
8452882 ATACACAT
1 ATACACAC
*
8452890 ACACCTACAC
1 ATA-C-ACAC
*
8452900 ATACAATAC
1 ATAC-ACAC
* *
8452909 ACATACAC
1 ATACACAC
*
8452917 ATACACAT
1 ATACACAC
* *
8452925 ACACATAC
1 ATACACAC
* *
8452933 ACATACAC
1 ATACACAC
8452941 ATACACATC
1 ATACACA-C
*
8452950 -TACATAC
1 ATACACAC
* *
8452957 ACATACAC
1 ATACACAC
*
8452965 ATACAATAC
1 ATAC-ACAC
* *
8452974 ACATACAC
1 ATACACAC
*
8452982 ATACACAT
1 ATACACAC
* *
8452990 ACATACAC
1 ATACACAC
*
8452998 ATACATAC
1 ATACACAC
* *
8453006 ACATACAC
1 ATACACAC
8453014 AT--ACAC
1 ATACACAC
*
8453020 ATATACAC
1 ATACACAC
*
8453028 ATACCATAC
1 ATA-CACAC
*
8453037 ATACACAT
1 ATACACAC
* *
8453045 ACCATACAC
1 A-TACACAC
*
8453054 ATACACAT
1 ATACACAC
* *
8453062 ACACATAC
1 ATACACAC
* *
8453070 ACATACAC
1 ATACACAC
*
8453078 ATACACAT
1 ATACACAC
* *
8453086 ACACATAC
1 ATACACAC
* *
8453094 ACATACAC
1 ATACACAC
*
8453102 ATACACAT
1 ATACACAC
* *
8453110 ACACATAGC
1 ATACACA-C
*
8453119 ACACACAC
1 ATACACAC
*
8453127 ACACACAC
1 ATACACAC
*
8453135 ACACACAC
1 ATACACAC
8453143 ATACACAC
1 ATACACAC
8453151 --ACACAC
1 ATACACAC
8453157 A-ACACAC
1 ATACACAC
*
8453164 ACACACAC
1 ATACACAC
*
8453172 ACACACAC
1 ATACACAC
*
8453180 ACACACAC
1 ATACACAC
*
8453188 ACACACAC
1 ATACACAC
8453196 A-ACACA-
1 ATACACAC
*
8453202 ACACACAC
1 ATACACAC
*
8453210 -CACACAC
1 ATACACAC
*
8453217 ACACACAC
1 ATACACAC
*
8453225 ACACACAC
1 ATACACAC
*
8453233 ACACACAC
1 ATACACAC
*
8453241 ATACCATAC
1 ATA-CACAC
* *
8453250 ACATACAC
1 ATACACAC
8453258 AT--ACAC
1 ATACACAC
*
8453264 ATACACAT
1 ATACACAC
* *
8453272 ACACATAC
1 ATACACAC
* *
8453280 ACATACAC
1 ATACACAC
*
8453288 ATACACAT
1 ATACACAC
* *
8453296 ACACATACC
1 ATACACA-C
*
8453305 ATACACAT
1 ATACACAC
* *
8453313 ACACATAC
1 ATACACAC
* *
8453321 ACATACAC
1 ATACACAC
8453329 ATACACAACC
1 ATACAC-A-C
*
8453339 ATACACAT
1 ATACACAC
*
8453347 ACACACAC
1 ATACACAC
8453355 ATACACATAC
1 ATACAC--AC
* *
8453365 ACATACAC
1 ATACACAC
8453373 ATACACAC
1 ATACACAC
*
8453381 ATACACAT
1 ATACACAC
* *
8453389 ACACATAC
1 ATACACAC
* *
8453397 ACATACAC
1 ATACACAC
*
8453405 ATACACAT
1 ATACACAC
* *
8453413 ACACATAC
1 ATACACAC
* *
8453421 ACATACAC
1 ATACACAC
*
8453429 ATACACAT
1 ATACACAC
* *
8453437 ACACATAC
1 ATACACAC
* *
8453445 ACATACAC
1 ATACACAC
8453453 ATACACAC
1 ATACACAC
*
8453461 ATACACAT
1 ATACACAC
* *
8453469 ACCATACAC
1 A-TACACAC
*
8453478 ATACACAT
1 ATACACAC
* *
8453486 ACACATAC
1 ATACACAC
* *
8453494 ACATACAC
1 ATACACAC
*
8453502 ATACACAT
1 ATACACAC
* *
8453510 ACACATAC
1 ATACACAC
* *
8453518 ACATACAC
1 ATACACAC
8453526 ATACAC-C
1 ATACACAC
8453533 -TACACATAC
1 ATACAC--AC
* *
8453542 ACATACAC
1 ATACACAC
*
8453550 ATACACAT
1 ATACACAC
* *
8453558 ACACATAC
1 ATACACAC
8453566 ATACACATAC
1 ATACAC--AC
* *
8453576 ACATACAC
1 ATACACAC
*
8453584 ATACACAT
1 ATACACAC
* *
8453592 ACACATAC
1 ATACACAC
* *
8453600 ACATACAC
1 ATACACAC
*
8453608 ATACCATAC
1 ATA-CACAC
* *
8453617 ACATACAC
1 ATACACAC
*
8453625 ATACACAG
1 ATACACAC
* *
8453633 ACATACAC
1 ATACACAC
8453641 ATACAC-C
1 ATACACAC
8453648 ATACACATAC
1 ATACAC--AC
* *
8453658 ACATACAC
1 ATACACAC
8453666 ATACCACAC
1 ATA-CACAC
8453675 A-ACACAC
1 ATACACAC
*
8453682 ACACACAC
1 ATACACAC
*
8453690 ACACACAC
1 ATACACAC
*
8453698 AACACACAC
1 -ATACACAC
*
8453707 ACACACAC
1 ATACACAC
*
8453715 ACACACAC
1 ATACACAC
*
8453723 ACACACAC
1 ATACACAC
8453731 ATACACAC
1 ATACACAC
*
8453739 ACACACAC
1 ATACACAC
*
8453747 ACACACAC
1 ATACACAC
*
8453755 ACACACAC
1 ATACACAC
*
8453763 ACACACAC
1 ATACACAC
*
8453771 ACACACAC
1 ATACACAC
*
8453779 ATACACAT
1 ATACACAC
* *
8453787 ACACATACC
1 ATACACA-C
8453796 ATACACATAC
1 ATACAC--AC
* *
8453806 ACATACAC
1 ATACACAC
*
8453814 ATACACAT
1 ATACACAC
* *
8453822 ACCATACAC
1 A-TACACAC
*
8453831 ATACACAT
1 ATACACAC
*
8453839 A-ACATAC
1 ATACACAC
* *
8453846 ACATACAC
1 ATACACAC
*
8453854 ATACACAT
1 ATACACAC
* *
8453862 ACACATAC
1 ATACACAC
8453870 ATACACATACC
1 ATACAC--A-C
*
8453881 ATACACAT
1 ATACACAC
* *
8453889 ACCATACAC
1 A-TACACAC
8453898 ATACACAAC
1 ATACAC-AC
* *
8453907 ACATACAC
1 ATACACAC
8453915 ATACACAC
1 ATACACAC
*
8453923 ATACACAT
1 ATACACAC
* *
8453931 ACACAGAC
1 ATACACAC
*
8453939 ATACAATAC
1 ATAC-ACAC
* *
8453948 ACATACAC
1 ATACACAC
8453956 ATACCAACAC
1 ATA-C-ACAC
8453966 ATACCATACAC
1 ATA-C--ACAC
*
8453977 ATACACAT
1 ATACACAC
* *
8453985 ACACATAC
1 ATACACAC
* *
8453993 ACATACAC
1 ATACACAC
8454001 ATACACAC
1 ATACACAC
8454009 --ACACAC
1 ATACACAC
8454015 AT--AC-C
1 ATACACAC
*
8454020 ATACACAT
1 ATACACAC
*
8454028 ACACTACAC
1 ATAC-ACAC
*
8454037 ATACATAC
1 ATACACAC
* *
8454045 ACATACAC
1 ATACACAC
8454053 AT--ACAC
1 ATACACAC
*
8454059 ATACACAT
1 ATACACAC
* *
8454067 ACACATAC
1 ATACACAC
* *
8454075 ACATACAC
1 ATACACAC
8454083 ATACACTAC
1 ATACAC-AC
8454092 --ACTACAC
1 ATAC-ACAC
*
8454099 ATACACAT
1 ATACACAC
*
8454107 ACACTACAC
1 ATAC-ACAC
8454116 ATACACACC
1 ATACACA-C
8454125 AT--ACAC
1 ATACACAC
*
8454131 ATACACAT
1 ATACACAC
* *
8454139 ACACATAC
1 ATACACAC
* *
8454147 ACATACAC
1 ATACACAC
*
8454155 ATACACAT
1 ATACACAC
* *
8454163 ACACATAC
1 ATACACAC
* *
8454171 ACATACAC
1 ATACACAC
*
8454179 ATACACAT
1 ATACACAC
*
8454187 ACACACAC
1 ATACACAC
*
8454195 ATACACAT
1 ATACACAC
*
8454203 ACACAACAC
1 ATAC-ACAC
*
8454212 ATACCATACC
1 ATA-CACA-C
8454222 ATACACATAC
1 ATACAC--AC
* *
8454232 ACATACAC
1 ATACACAC
8454240 ATACACATAC
1 ATACAC--AC
* *
8454250 ACATACAC
1 ATACACAC
8454258 ATACACAAC
1 ATACAC-AC
* *
8454267 ACATACAC
1 ATACACAC
*
8454275 ATACACAT
1 ATACACAC
* *
8454283 ACATACAC
1 ATACACAC
*
8454291 ATACACAT
1 ATACACAC
* *
8454299 ACACATAC
1 ATACACAC
* *
8454307 ACATACAC
1 ATACACAC
8454315 ATACACAC
1 ATACACAC
* *
8454323 ACATACAC
1 ATACACAC
8454331 ATACTACAC
1 ATAC-ACAC
8454340 AT--ACAC
1 ATACACAC
8454346 ATACACACC
1 ATACACA-C
* *
8454355 ACATACAC
1 ATACACAC
*
8454363 ATACACAT
1 ATACACAC
* *
8454371 ACACATAC
1 ATACACAC
* *
8454379 ACATACAC
1 ATACACAC
*
8454387 ATACACAT
1 ATACACAC
* *
8454395 ACACATAC
1 ATACACAC
* *
8454403 ACATACAC
1 ATACACAC
*
8454411 ATACACAT
1 ATACACAC
* *
8454419 ACACATAC
1 ATACACAC
* *
8454427 ACATACAC
1 ATACACAC
8454435 ATACACAC
1 ATACACAC
8454443 --ACTACAC
1 ATAC-ACAC
*
8454450 ATACCATAC
1 ATA-CACAC
* *
8454459 ACATACAC
1 ATACACAC
8454467 ATACACAC
1 ATACACAC
8454475 AT--ACAC
1 ATACACAC
8454481 AT--ACAC
1 ATACACAC
*
8454487 ATACCCAC
1 ATACACAC
8454495 ATACACATAC
1 ATACAC--AC
* *
8454505 ACAGACAC
1 ATACACAC
8454513 ATAC-CAC
1 ATACACAC
8454520 --ACACAC
1 ATACACAC
8454526 ATACACAAC
1 ATACAC-AC
*
8454535 ACACACAC
1 ATACACAC
*
8454543 ACACACAC
1 ATACACAC
8454551 AT--AC-C
1 ATACACAC
8454556 ATACACAC
1 ATACACAC
8454564 ATACAC-C
1 ATACACAC
8454571 -TACACAAC
1 ATACAC-AC
*
8454579 ACACACACC
1 ATACACA-C
8454588 AT--ACAC
1 ATACACAC
8454594 ATACACAC
1 ATACACAC
* *
8454602 ACATACAC
1 ATACACAC
8454610 AT--ACAC
1 ATACACAC
8454616 ATACACACC
1 ATACACA-C
*
8454625 ACACACAC
1 ATACACAC
*
8454633 ACACACAC
1 ATACACAC
* *
8454641 ACATACAC
1 ATACACAC
*
8454649 ATACACAT
1 ATACACAC
*
8454657 ACACCTACAC
1 ATA-C-ACAC
*
8454667 ATACACAT
1 ATACACAC
*
8454675 ACACAACAC
1 ATAC-ACAC
8454684 ATACACATAC
1 ATACAC--AC
* *
8454694 ACATACAC
1 ATACACAC
8454702 ATACACA-
1 ATACACAC
*
8454709 ACACACAC
1 ATACACAC
8454717 ATACCTACAC
1 ATA-C-ACAC
8454727 ATACA-AC
1 ATACACAC
8454734 AT--ACAC
1 ATACACAC
*
8454740 ATACATAC
1 ATACACAC
* *
8454748 ACATACAC
1 ATACACAC
*
8454756 ATACACAG
1 ATACACAC
* *
8454764 ACACATAC
1 ATACACAC
* *
8454772 ACATACAC
1 ATACACAC
8454780 ATACACAC
1 ATACACAC
8454788 --ACACAC
1 ATACACAC
8454794 ATACACAC
1 ATACACAC
*
8454802 ACACACAC
1 ATACACAC
*
8454810 ACACACACC
1 ATACACA-C
*
8454819 ACACACAC
1 ATACACAC
*
8454827 A-CCACAC
1 ATACACAC
*
8454834 ACACACAC
1 ATACACAC
8454842 A-ACACAC
1 ATACACAC
8454849 --ACACAC
1 ATACACAC
*
8454855 ATACACAT
1 ATACACAC
*
8454863 ACACATCAC
1 ATACA-CAC
8454872 ATACACATAC
1 ATACAC--AC
* *
8454882 ACATACAC
1 ATACACAC
8454890 ATACACATACC
1 ATACAC--A-C
*
8454901 ATACACAT
1 ATACACAC
*
8454909 ACACATCAC
1 ATACA-CAC
8454918 ATACACAAC
1 ATACAC-AC
* *
8454927 ACATACAC
1 ATACACAC
8454935 ATACCATACAC
1 ATA-C--ACAC
8454946 ATACCATACAC
1 ATA-C--ACAC
8454957 A-ACACAC
1 ATACACAC
8454964 ATACACATACC
1 ATACAC--A-C
*
8454975 ATACATAC
1 ATACACAC
* *
8454983 ACATACAC
1 ATACACAC
8454991 ATACACATC
1 ATACACA-C
* *
8455000 -CACATAC
1 ATACACAC
* *
8455007 ACAGACAC
1 ATACACAC
8455015 ATACACAC
1 ATACACAC
8455023 AT--ACAC
1 ATACACAC
*
8455029 ATACCATAC
1 ATA-CACAC
* *
8455038 ACATACAC
1 ATACACAC
*
8455046 ATACACAT
1 ATACACAC
8455054 A-ACATACAC
1 ATAC--ACAC
8455063 AT-C-CAC
1 ATACACAC
*
8455069 ATACACAT
1 ATACACAC
* *
8455077 ACACATAC
1 ATACACAC
* *
8455085 ACATACAC
1 ATACACAC
*
8455093 ATACACAT
1 ATACACAC
* *
8455101 ACACATAC
1 ATACACAC
* *
8455109 ACATACAC
1 ATACACAC
8455117 ATACACTAC
1 ATACAC-AC
* *
8455126 ACATACAC
1 ATACACAC
8455134 AT--ACAC
1 ATACACAC
*
8455140 ATACACAT
1 ATACACAC
* *
8455148 ACATACAC
1 ATACACAC
8455156 ATACACAACC
1 ATACAC-A-C
*
8455166 ATACACAT
1 ATACACAC
* *
8455174 ACATACAC
1 ATACACAC
*
8455182 ATACACAT
1 ATACACAC
* *
8455190 ACACATACC
1 ATACACA-C
*
8455199 ATACACAT
1 ATACACAC
* *
8455207 ACACATAC
1 ATACACAC
* *
8455215 ACATACAC
1 ATACACAC
8455223 ATACACAC
1 ATACACAC
8455231 -T--ACAC
1 ATACACAC
*
8455236 ATACACAT
1 ATACACAC
* *
8455244 ACACATACC
1 ATACACA-C
8455253 ATACACAC
1 ATACACAC
*
8455261 ACACACTAC
1 ATACAC-AC
* *
8455270 ACATACAC
1 ATACACAC
8455278 ATACACATCC
1 ATACACA--C
* *
8455288 ACATACAC
1 ATACACAC
*
8455296 ATACACAT
1 ATACACAC
*
8455304 ACACACAC
1 ATACACAC
*
8455312 ATACACAT
1 ATACACAC
* *
8455320 ACACATAC
1 ATACACAC
* *
8455328 ACATACAC
1 ATACACAC
*
8455336 ATACCATAC
1 ATA-CACAC
* *
8455345 ACATACAC
1 ATACACAC
8455353 ATACTACAC
1 ATAC-ACAC
*
8455362 ATACACAT
1 ATACACAC
* *
8455370 ACACATAC
1 ATACACAC
* *
8455378 ACATACAC
1 ATACACAC
8455386 ATACACAC
1 ATACACAC
8455394 AT--ACAC
1 ATACACAC
8455400 ATCACTACAC
1 AT-AC-ACAC
8455410 ATAC-CAC
1 ATACACAC
8455417 ATACACAC
1 ATACACAC
8455425 AT--ACAC
1 ATACACAC
*
8455431 ATACACAT
1 ATACACAC
* *
8455439 ACACATACC
1 ATACACA-C
*
8455448 ATACACAT
1 ATACACAC
* *
8455456 ACACATAC
1 ATACACAC
* *
8455464 ACATACAC
1 ATACACAC
*
8455472 ATACACAT
1 ATACACAC
* *
8455480 ACACATAC
1 ATACACAC
* *
8455488 ACATACAC
1 ATACACAC
*
8455496 ATACACAT
1 ATACACAC
* *
8455504 ACACATAC
1 ATACACAC
8455512 AATACACATAAC
1 -ATACAC---AC
8455524 ATACACTAC
1 ATACAC-AC
* *
8455533 ACATACAC
1 ATACACAC
8455541 ATACACATC
1 ATACACA-C
* *
8455550 ACATACAC
1 ATACACAC
8455558 AT--ACAC
1 ATACACAC
*
8455564 ATACACAT
1 ATACACAC
* *
8455572 ACACATAC
1 ATACACAC
* *
8455580 ACATACAC
1 ATACACAC
*
8455588 ATACACAT
1 ATACACAC
* *
8455596 ACACATAC
1 ATACACAC
*
8455604 ATACACAT
1 ATACACAC
* *
8455612 ACACATAC
1 ATACACAC
* *
8455620 ACATACAC
1 ATACACAC
8455628 ATACAC-C
1 ATACACAC
*
8455635 -TCACATAC
1 AT-ACACAC
* *
8455643 ACATACAC
1 ATACACAC
*
8455651 ATACACAT
1 ATACACAC
* *
8455659 ACACATAC
1 ATACACAC
* *
8455667 ACATACAC
1 ATACACAC
*
8455675 ATACACAT
1 ATACACAC
*
8455683 ACACACAC
1 ATACACAC
8455691 ATACACAAAC
1 ATACAC--AC
* *
8455701 ACATACAC
1 ATACACAC
8455709 ATACATCAC
1 ATACA-CAC
8455718 ATACACAC
1 ATACACAC
* *
8455726 ACATACAC
1 ATACACAC
8455734 ATACACATAC
1 ATACAC--AC
* *
8455744 ACATACAC
1 ATACACAC
*
8455752 ATACACAT
1 ATACACAC
* *
8455760 ACCATACAC
1 A-TACACAC
*
8455769 ATACACAT
1 ATACACAC
*
8455777 ACACTACAC
1 ATAC-ACAC
*
8455786 ATACACAT
1 ATACACAC
* *
8455794 ACCATACAC
1 A-TACACAC
8455803 ATACAACAC
1 ATAC-ACAC
8455812 ATACACAC
1 ATACACAC
*
8455820 ATACACAT
1 ATACACAC
* *
8455828 ACACATAC
1 ATACACAC
* *
8455836 ACATACAC
1 ATACACAC
8455844 ATACACAC
1 ATACACAC
* *
8455852 ACACATAC
1 ATACACAC
* *
8455860 ACATACAC
1 ATACACAC
*
8455868 ATACACAT
1 ATACACAC
*
8455876 ACACACAC
1 ATACACAC
8455884 ATACACATAC
1 ATACAC--AC
* *
8455894 ACATACAC
1 ATACACAC
*
8455902 ATACACAT
1 ATACACAC
* *
8455910 ACACATAC
1 ATACACAC
* *
8455918 ACATACAC
1 ATACACAC
*
8455926 ATACACAT
1 ATACACAC
*
8455934 ACCACTACAC
1 A-TAC-ACAC
8455944 ATACACATC
1 ATACACA-C
* *
8455953 ACATACAC
1 ATACACAC
*
8455961 ATACACAT
1 ATACACAC
* *
8455969 ACACATAC
1 ATACACAC
* *
8455977 ACATACAC
1 ATACACAC
*
8455985 ATACACAT
1 ATACACAC
* *
8455993 ACACATAC
1 ATACACAC
* *
8456001 ACATACAC
1 ATACACAC
8456009 ATACACTAC
1 ATACAC-AC
* *
8456018 ACATACAC
1 ATACACAC
8456026 ATACACAAC
1 ATACAC-AC
* *
8456035 ACATACAC
1 ATACACAC
*
8456043 ATACACAT
1 ATACACAC
* *
8456051 AAACATAC
1 ATACACAC
* *
8456059 ACATACAC
1 ATACACAC
8456067 AT--ACAC
1 ATACACAC
*
8456073 ATACACAT
1 ATACACAC
* *
8456081 ACACATAC
1 ATACACAC
8456089 ATACATACAC
1 ATAC--ACAC
*
8456099 ATACCCAC
1 ATACACAC
8456107 AT--ACAC
1 ATACACAC
*
8456113 ATACACAT
1 ATACACAC
* *
8456121 ACACATAC
1 ATACACAC
* *
8456129 ACATACAC
1 ATACACAC
*
8456137 ATACACAT
1 ATACACAC
* *
8456145 ACACATAC
1 ATACACAC
* *
8456153 ACATACAC
1 ATACACAC
*
8456161 ATACACAT
1 ATACACAC
* *
8456169 ACACATAC
1 ATACACAC
* *
8456177 ACATACAC
1 ATACACAC
*
8456185 ATACACAT
1 ATACACAC
* *
8456193 ACACATAC
1 ATACACAC
* *
8456201 ACATACAC
1 ATACACAC
*
8456209 ATACATAC
1 ATACACAC
8456217 ATACA
1 ATACA
8456222 TATACATATC
Statistics
Matches: 2798, Mismatches: 889, Indels: 481
0.67 0.21 0.12
Matches are distributed among these distances:
5 13 0.00
6 161 0.06
7 135 0.05
8 1819 0.65
9 425 0.15
10 179 0.06
11 64 0.02
12 2 0.00
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (8 bp):
ATACACAC
Found at i:8456236 original size:11 final size:10
Alignment explanation
Indices: 8450747--8456243 Score: 973
Period size: 10 Copynumber: 547.0 Consensus size: 10
8450737 ACATGCATGC
8450747 ATACATAC--
1 ATACATACAT
8450755 ATACATACAT
1 ATACATACAT
8450765 GCATACATACAT
1 --ATACATACAT
8450777 GCATACATACAT
1 --ATACATACAT
8450789 GCATACATACAT
1 --ATACATACAT
8450801 GCATACATACAT
1 --ATACATACAT
8450813 GCATACATACAT
1 --ATACATACAT
* *
8450825 GCATGCATATAT
1 --ATACATACAT
8450837 ATACATACAT
1 ATACATACAT
8450847 ACATACATACAT
1 --ATACATACAT
8450859 ACATACATACAT
1 --ATACATACAT
8450871 GCATACATAC--
1 --ATACATACAT
*
8450881 ATACATGCAT
1 ATACATACAT
8450891 ACATACATACAT
1 --ATACATACAT
*
8450903 ACATACATGCAT
1 --ATACATACAT
* *
8450915 GCATGCATGCAT
1 --ATACATACAT
*
8450927 GCATGCATACAT
1 --ATACATACAT
8450939 ACATACATACAT
1 --ATACATACAT
8450951 ACATACATACAT
1 --ATACATACAT
8450963 ACATACATACAT
1 --ATACATACAT
8450975 ACATACATACAT
1 --ATACATACAT
8450987 ACATACATACAT
1 --ATACATACAT
8450999 ACATACATACAT
1 --ATACATACAT
8451011 ACATACATACAT
1 --ATACATACAT
8451023 ACATACATACAT
1 --ATACATACAT
8451035 ACATACATACAT
1 --ATACATACAT
8451047 ACATACATACAT
1 --ATACATACAT
8451059 ACATACATACAT
1 --ATACATACAT
8451071 ACATACATACAT
1 --ATACATACAT
8451083 ACATACATACAT
1 --ATACATACAT
*
8451095 ACATACATACAAC
1 --ATACATAC-AT
8451108 ATACATACAT
1 ATACATACAT
8451118 ACATACATACAT
1 --ATACATACAT
*
8451130 ACACATACAT
1 ATACATACAT
*
8451140 ACTAC-TACTAC
1 A-TACATAC-AT
8451151 ATACATAC--
1 ATACATACAT
8451159 ATACATACAT
1 ATACATACAT
8451169 ACATACATACAT
1 --ATACATACAT
8451181 A-AC--ACAT
1 ATACATACAT
8451188 ACTACATAC--
1 A-TACATACAT
8451197 ATACATACAT
1 ATACATACAT
8451207 CATACATAC--
1 -ATACATACAT
8451216 ATACATACAT
1 ATACATACAT
8451226 ACATACATACAT
1 --ATACATACAT
8451238 ACATACATACAT
1 --ATACATACAT
8451250 ACATACATACAT
1 --ATACATACAT
8451262 ACATACATACAT
1 --ATACATACAT
8451274 ACATACATACAT
1 --ATACATACAT
8451286 ACATACATACAT
1 --ATACATACAT
8451298 ACATACATACAT
1 --ATACATACAT
8451310 ACATACATACAT
1 --ATACATACAT
8451322 ACATACATACAT
1 --ATACATACAT
8451334 ACATACATACATCT
1 --ATACATACA--T
*
8451348 ATACATCCAT
1 ATACATACAT
* *
8451358 CCATCCATCCAT
1 --ATACATACAT
*
8451370 CCATACATCCAT
1 --ATACATACAT
*
8451382 ACATACATCCAT
1 --ATACATACAT
*
8451394 CCATCCATACAT
1 --ATACATACAT
*
8451406 ACATACATCCAT
1 --ATACATACAT
*
8451418 ACATCCATACAT
1 --ATACATACAT
8451430 ATACATATGCAT
1 ATACATA--CAT
* *
8451442 ATGC-TGCAT
1 ATACATACAT
*
8451451 ACACATATGCAT
1 ATACATA--CAT
*
8451463 ACACATATGCAT
1 ATACATA--CAT
*
8451475 ACACATATGCAT
1 ATACATA--CAT
*
8451487 ACACATATGCAT
1 ATACATA--CAT
* ***
8451499 ACACATATGC
1 ATACATACAT
*
8451509 ATACACACAT
1 ATACATACAT
*
8451519 ATGCATACACAT
1 ATACAT--ACAT
* *
8451531 ATGCATACAC
1 ATACATACAT
* * *
8451541 ACATATGCAT
1 ATACATACAT
* *
8451551 ACACATGCAT
1 ATACATACAT
8451561 ATACGCATATGCAT
1 ATA--CATA--CAT
*
8451575 ATACATATGCAA
1 ATACATA--CAT
8451587 ATACGCATATGCAT
1 ATA--CATA--CAT
8451601 ATACGCATATGCAT
1 ATA--CATA--CAT
8451615 ATACATATGCAT
1 ATACATA--CAT
8451627 ATACGCATATGCAT
1 ATA--CATA--CAT
8451641 ATACATATGCAT
1 ATACATA--CAT
8451653 ATAC--ACAT
1 ATACATACAT
*
8451661 ACACATACAT
1 ATACATACAT
*
8451671 ATACATATGTAT
1 ATACATA--CAT
8451683 ATACACATACAT
1 AT--ACATACAT
*
8451695 ACACATACAT
1 ATACATACAT
8451705 ATACATACAT
1 ATACATACAT
8451715 AT--ATACAT
1 ATACATACAT
* *
8451723 ACACATACAC
1 ATACATACAT
8451733 ATAC--ACAT
1 ATACATACAT
*
8451741 ACACATACACAT
1 ATACAT--ACAT
*
8451753 ACACATACACAT
1 ATACAT--ACAT
*
8451765 ACACATACAT
1 ATACATACAT
8451775 ATACAT--AT
1 ATACATACAT
*
8451783 ACACATACAT
1 ATACATACAT
8451793 ATACACATACAT
1 AT--ACATACAT
8451805 ATACACATACAT
1 AT--ACATACAT
8451817 ATACACATACAT
1 AT--ACATACAT
8451829 ATAC--ACAT
1 ATACATACAT
* *
8451837 ACACATACAC
1 ATACATACAT
*
8451847 ATACATACAC
1 ATACATACAT
* * *
8451857 ACATATACAC
1 ATACATACAT
8451867 ATAC--ACAT
1 ATACATACAT
* *
8451875 ACACATACAC
1 ATACATACAT
*
8451885 ATACACTACAC
1 ATACA-TACAT
8451896 ATAC--ACAT
1 ATACATACAT
*
8451904 ACACATACAT
1 ATACATACAT
*
8451914 ACACATACAT
1 ATACATACAT
* *
8451924 ACACATACAC
1 ATACATACAT
8451934 ATAC--ACAT
1 ATACATACAT
*
8451942 ACACATACCAT
1 ATACATA-CAT
* *
8451953 ACACAACACAT
1 ATAC-ATACAT
* *
8451964 ACACATACAC
1 ATACATACAT
8451974 ATAC--ACAT
1 ATACATACAT
* *
8451982 ACACATACAC
1 ATACATACAT
8451992 ATAC--ACAT
1 ATACATACAT
*
8452000 ACACATACCAT
1 ATACATA-CAT
*
8452011 ACACATACACAT
1 ATACAT--ACAT
* *
8452023 ACACATACAC
1 ATACATACAT
8452033 ATACATACAT
1 ATACATACAT
8452043 ATACATATACAT
1 ATAC--ATACAT
*
8452055 ATACATATAT
1 ATACATACAT
* *
8452065 ACATATACAT
1 ATACATACAT
* *
8452075 ATACATATAC
1 ATACATACAT
8452085 ATACATAACAT
1 ATACAT-ACAT
8452096 ATACATATACAT
1 ATAC--ATACAT
8452108 ATACATATACAT
1 ATAC--ATACAT
8452120 ATACATACAT
1 ATACATACAT
8452130 ATACATATACAT
1 ATAC--ATACAT
*
8452142 ATATA-ACAT
1 ATACATACAT
8452151 ATACATAC--
1 ATACATACAT
8452159 AT--A-ACAT
1 ATACATACAT
8452166 ATACATACAT
1 ATACATACAT
8452176 ATACTATACAT
1 ATAC-ATACAT
8452187 ATACATACAT
1 ATACATACAT
8452197 ATACATATACCAT
1 ATAC--ATA-CAT
* *
8452210 ACACATACAC
1 ATACATACAT
8452220 AT--ATACAT
1 ATACATACAT
8452228 ATACATATACAT
1 ATAC--ATACAT
8452240 ATACATATACAT
1 ATAC--ATACAT
8452252 ATACATATACAT
1 ATAC--ATACAT
*
8452264 ACACATACAT
1 ATACATACAT
*
8452274 ATACAGATACAG
1 ATAC--ATACAT
*
8452286 ATACACATCAT
1 ATACATA-CAT
*
8452297 ATAC--AC-C
1 ATACATACAT
*
8452304 ATACACACAT
1 ATACATACAT
*
8452314 ACACATACACT
1 ATACATACA-T
8452325 ATACATACACAT
1 ATACAT--ACAT
*
8452337 ACACATACCAT
1 ATACATA-CAT
*
8452348 ACACATACACT
1 ATACATACA-T
* *
8452359 ACACATACAC
1 ATACATACAT
*
8452369 ATCACATAACAC
1 AT-ACAT-ACAT
*
8452381 ATACATATCAC
1 ATACATA-CAT
8452392 ATAC--ACAT
1 ATACATACAT
* *
8452400 ACACATACAC
1 ATACATACAT
* *
8452410 ATACACACAC
1 ATACATACAT
* *
8452420 ACACA-ACAC
1 ATACATACAT
8452429 ATAC--ACAT
1 ATACATACAT
*
8452437 ACACATACACT
1 ATACATACA-T
* *
8452448 ACACATACAC
1 ATACATACAT
8452458 ATAC--ACAT
1 ATACATACAT
* *
8452466 ACACATACAC
1 ATACATACAT
* *
8452476 ATACACACAC
1 ATACATACAT
*
8452486 A-ACACTACAC
1 ATACA-TACAT
8452496 ATAC--ACAT
1 ATACATACAT
* *
8452504 ACACATACAC
1 ATACATACAT
*
8452514 ATACACTACAC
1 ATACA-TACAT
8452525 ATAC--ACAT
1 ATACATACAT
* *
8452533 ACACATACAC
1 ATACATACAT
8452543 ATACATACACAT
1 ATACAT--ACAT
*
8452555 ACACATAACAT
1 ATACAT-ACAT
*
8452566 ACACATACACT
1 ATACATACA-T
* *
8452577 ACACATACAC
1 ATACATACAT
8452587 ATAC--ACAT
1 ATACATACAT
* *
8452595 ACACATACAC
1 ATACATACAT
* *
8452605 ATACACACAC
1 ATACATACAT
*
8452615 ATACATACAC
1 ATACATACAT
8452625 ATAC--ACAT
1 ATACATACAT
*
8452633 ACACATACAT
1 ATACATACAT
*
8452643 ACACA-ACCAT
1 ATACATA-CAT
* *
8452653 ACACATACAC
1 ATACATACAT
8452663 ATACATACA-
1 ATACATACAT
** *
8452672 CCACATACAC
1 ATACATACAT
*
8452682 ATACACACAT
1 ATACATACAT
*
8452692 ACACATATACAT
1 ATAC--ATACAT
* *
8452704 ACACATACAC
1 ATACATACAT
*
8452714 ATACCATACAC
1 ATA-CATACAT
8452725 ATACATAACAT
1 ATACAT-ACAT
* *
8452736 A-CCATACAC
1 ATACATACAT
*
8452745 ATACACAC-T
1 ATACATACAT
* *
8452754 ACACATACAC
1 ATACATACAT
8452764 ATAC--ACATT
1 ATACATACA-T
*
8452773 ACACATACAT
1 ATACATACAT
*
8452783 ACACATACACAT
1 ATACAT--ACAT
*
8452795 ACACATAACAT
1 ATACAT-ACAT
* **
8452806 ACACACCCAT
1 ATACATACAT
* *
8452816 ACACATACAC
1 ATACATACAT
* *
8452826 ACACATACAC
1 ATACATACAT
8452836 ATAC--ACAT
1 ATACATACAT
8452844 ATACCATACACAT
1 ATA-CAT--ACAT
* *
8452857 ACACATACAC
1 ATACATACAT
*
8452867 ATACACCACAT
1 ATACA-TACAT
* *
8452878 ACACATACAC
1 ATACATACAT
*
8452888 ATACACCTACAC
1 ATACA--TACAT
*
8452900 ATACAATACAC
1 ATAC-ATACAT
8452911 ATAC--ACAT
1 ATACATACAT
* *
8452919 ACACATACAC
1 ATACATACAT
8452929 ATAC--ACAT
1 ATACATACAT
* *
8452937 ACACATACAC
1 ATACATACAT
8452947 AT-C-TACAT
1 ATACATACAT
* *
8452955 ACACATACAC
1 ATACATACAT
*
8452965 ATACAATACAC
1 ATAC-ATACAT
8452976 ATAC--ACAT
1 ATACATACAT
*
8452984 ACACATACAT
1 ATACATACAT
*
8452994 ACACATACAT
1 ATACATACAT
* *
8453004 ACACATACAC
1 ATACATACAT
8453014 ATAC--ACAT
1 ATACATACAT
8453022 ATAC--ACAT
1 ATACATACAT
*
8453030 A-CCATACAT
1 ATACATACAT
*
8453039 ACACATACCAT
1 ATACATA-CAT
* *
8453050 ACACATACAC
1 ATACATACAT
8453060 ATAC--ACAT
1 ATACATACAT
* *
8453068 ACACATACAC
1 ATACATACAT
8453078 ATAC--ACAT
1 ATACATACAT
* *
8453086 ACACATACAC
1 ATACATACAT
8453096 ATAC--ACAT
1 ATACATACAT
* *
8453104 ACACATACAC
1 ATACATACAT
*
8453114 ATAGC--ACAC
1 ATA-CATACAT
* * *
8453123 ACACACACAC
1 ATACATACAT
* * *
8453133 ACACACACAC
1 ATACATACAT
* *
8453143 ATACACACAC
1 ATACATACAT
* *
8453153 ACACA-ACAC
1 ATACATACAT
* * *
8453162 ACACACACAC
1 ATACATACAT
* * *
8453172 ACACACACAC
1 ATACATACAT
* * *
8453182 ACACACACAC
1 ATACATACAT
* *
8453192 ACACA-ACAC
1 ATACATACAT
* *
8453201 A-ACACACACC
1 ATACATACA-T
* * *
8453211 ACACACACAC
1 ATACATACAT
* * *
8453221 ACACACACAC
1 ATACATACAT
* * *
8453231 ACACACACAC
1 ATACATACAT
*
8453241 ATACCATACAC
1 ATA-CATACAT
8453252 ATAC--ACAT
1 ATACATACAT
* *
8453260 ACACATACAC
1 ATACATACAT
8453270 ATAC--ACAT
1 ATACATACAT
* *
8453278 ACACATACAC
1 ATACATACAT
8453288 ATAC--ACAT
1 ATACATACAT
*
8453296 ACACATACCAT
1 ATACATA-CAT
* *
8453307 ACACATACAC
1 ATACATACAT
8453317 ATAC--ACAT
1 ATACATACAT
* *
8453325 ACACATACAC
1 ATACATACAT
*
8453335 A-ACCATACAC
1 ATA-CATACAT
* *
8453345 ATACACACAC
1 ATACATACAT
8453355 ATAC--ACAT
1 ATACATACAT
* *
8453363 ACACATACAC
1 ATACATACAT
*
8453373 ATACACACAT
1 ATACATACAT
* *
8453383 ACACATACAC
1 ATACATACAT
8453393 ATAC--ACAT
1 ATACATACAT
* *
8453401 ACACATACAC
1 ATACATACAT
8453411 ATAC--ACAT
1 ATACATACAT
*
8453419 ACACATACACAT
1 ATACAT--ACAT
*
8453431 ACACATACACAT
1 ATACAT--ACAT
* *
8453443 ACACATACAC
1 ATACATACAT
*
8453453 ATACACACAT
1 ATACATACAT
*
8453463 ACACATACCAT
1 ATACATA-CAT
* *
8453474 ACACATACAC
1 ATACATACAT
8453484 ATAC--ACAT
1 ATACATACAT
* *
8453492 ACACATACAC
1 ATACATACAT
8453502 ATAC--ACAT
1 ATACATACAT
*
8453510 ACACATACACAT
1 ATACAT--ACAT
*
8453522 ACACATACACCT
1 ATACATACA--T
* *
8453534 ACACATACAC
1 ATACATACAT
8453544 ATAC--ACAT
1 ATACATACAT
* *
8453552 ACACATACAC
1 ATACATACAT
*
8453562 ATACATACAC
1 ATACATACAT
8453572 ATAC--ACAT
1 ATACATACAT
* *
8453580 ACACATACAC
1 ATACATACAT
8453590 ATAC--ACAT
1 ATACATACAT
* *
8453598 ACACATACAC
1 ATACATACAT
*
8453608 ATACCATACAC
1 ATA-CATACAT
8453619 ATAC--ACAT
1 ATACATACAT
* *
8453627 ACACAGACAT
1 ATACATACAT
* *
8453637 ACACATACACC
1 ATACATACA-T
8453648 ATAC--ACAT
1 ATACATACAT
* *
8453656 ACACATACAC
1 ATACATACAT
* *
8453666 ATAC-CACAC
1 ATACATACAT
* *
8453675 A-ACACACAC
1 ATACATACAT
* * *
8453684 ACACACACAC
1 ATACATACAT
*
8453694 ACACA-AC--
1 ATACATACAT
* * *
8453701 ACACACACAC
1 ATACATACAT
* * *
8453711 ACACACACAC
1 ATACATACAT
* * *
8453721 ACACACACAC
1 ATACATACAT
* *
8453731 ATACACACAC
1 ATACATACAT
* * *
8453741 ACACACACAC
1 ATACATACAT
* * *
8453751 ACACACACAC
1 ATACATACAT
* * *
8453761 ACACACACAC
1 ATACATACAT
* *
8453771 ACACACACAT
1 ATACATACAT
* *
8453781 ACACATACAC
1 ATACATACAT
*
8453791 ATACCATACAC
1 ATA-CATACAT
8453802 ATAC--ACAT
1 ATACATACAT
* *
8453810 ACACATACAC
1 ATACATACAT
*
8453820 ATACCATACAC
1 ATA-CATACAT
8453831 ATAC--ACAT
1 ATACATACAT
*
8453839 A-ACATACAC
1 ATACATACAT
8453848 ATAC--ACAT
1 ATACATACAT
* *
8453856 ACACATACAC
1 ATACATACAT
*
8453866 ATACATACAC
1 ATACATACAT
*
8453876 ATACCATACAC
1 ATA-CATACAT
*
8453887 ATACCATACAC
1 ATA-CATACAT
8453898 ATAC--ACA-
1 ATACATACAT
* *
8453905 ACACATACAC
1 ATACATACAT
*
8453915 ATACACACAT
1 ATACATACAT
* *
8453925 ACACATACAC
1 ATACATACAT
*
8453935 AGACATACA-
1 ATACATACAT
8453944 ATAC--ACAT
1 ATACATACAT
*
8453952 ACACATACCA-
1 ATACATA-CAT
*
8453962 ACACATACCAT
1 ATACATA-CAT
* *
8453973 ACACATACAC
1 ATACATACAT
8453983 ATAC--ACAT
1 ATACATACAT
* *
8453991 ACACATACAC
1 ATACATACAT
* *
8454001 ATACACACAC
1 ATACATACAT
*
8454011 ACACATACCAT
1 ATACATA-CAT
*
8454022 ACACATACACT
1 ATACATACA-T
*
8454033 ACACATACAT
1 ATACATACAT
* *
8454043 ACACATACAC
1 ATACATACAT
8454053 ATAC--ACAT
1 ATACATACAT
*
8454061 ACACATACACAT
1 ATACAT--ACAT
* *
8454073 ACACATACAC
1 ATACATACAT
8454083 ATACACTACACT
1 ATACA-TACA-T
* *
8454095 ACACATACAC
1 ATACATACAT
*
8454105 ATACACTACAC
1 ATACA-TACAT
*
8454116 ATACACACCAT
1 ATACATA-CAT
* *
8454127 ACACATACAC
1 ATACATACAT
8454137 ATAC--ACAT
1 ATACATACAT
* *
8454145 ACACATACAC
1 ATACATACAT
8454155 ATAC--ACAT
1 ATACATACAT
* *
8454163 ACACATACAC
1 ATACATACAT
8454173 ATAC--ACAT
1 ATACATACAT
* *
8454181 ACACATACAC
1 ATACATACAT
* *
8454191 ACACATACAC
1 ATACATACAT
* *
8454201 ATACACAACAC
1 ATACA-TACAT
8454212 ATACCATACCAT
1 ATA-CATA-CAT
* *
8454224 ACACATACAC
1 ATACATACAT
8454234 ATAC--ACAT
1 ATACATACAT
* *
8454242 ACACATACAC
1 ATACATACAT
8454252 ATAC--ACAT
1 ATACATACAT
* *
8454260 ACACAACACAT
1 ATAC-ATACAT
* *
8454271 ACACATACAC
1 ATACATACAT
*
8454281 ATACATACAC
1 ATACATACAT
8454291 ATAC--ACAT
1 ATACATACAT
*
8454299 ACACATACACAT
1 ATACAT--ACAT
* *
8454311 ACACATACAC
1 ATACATACAT
* *
8454321 ACACATACAC
1 ATACATACAT
*
8454331 ATACTACACAT
1 ATAC-ATACAT
* *
8454342 ACACATACAC
1 ATACATACAT
* *
8454352 ACCACATACAC
1 A-TACATACAT
8454363 ATAC--ACAT
1 ATACATACAT
* *
8454371 ACACATACAC
1 ATACATACAT
8454381 ATAC--ACAT
1 ATACATACAT
* *
8454389 ACACATACAC
1 ATACATACAT
8454399 ATAC--ACAT
1 ATACATACAT
* *
8454407 ACACATACAC
1 ATACATACAT
8454417 ATAC--ACAT
1 ATACATACAT
* *
8454425 ACACATACAC
1 ATACATACAT
*
8454435 ATACACACACT
1 ATACATACA-T
*
8454446 ACACATACCAT
1 ATACATA-CAT
* *
8454457 ACACATACAC
1 ATACATACAT
*
8454467 ATACACACAT
1 ATACATACAT
* *
8454477 ACACATACAC
1 ATACATACAT
**
8454487 ATACCCACAT
1 ATACATACAT
* *
8454497 ACACATACAC
1 ATACATACAT
*
8454507 AGAC--ACAT
1 ATACATACAT
* * *
8454515 ACCACACACAC
1 A-TACATACAT
* *
8454526 ATACACAACAC
1 ATACA-TACAT
* * *
8454537 ACACACACAC
1 ATACATACAT
* *
8454547 ACACATAC-C
1 ATACATACAT
*
8454556 ATACACACAT
1 ATACATACAT
* * *
8454566 ACACCTACAC
1 ATACATACAT
* *
8454576 A-ACACACAC
1 ATACATACAT
* *
8454585 A-CCATACAC
1 ATACATACAT
* *
8454594 ATACACACAC
1 ATACATACAT
8454604 ATAC--ACAT
1 ATACATACAT
* *
8454612 ACACATACAC
1 ATACATACAT
* * *
8454622 ACCACACACAC
1 A-TACATACAT
* * *
8454633 ACACACACAC
1 ATACATACAT
8454643 ATAC--ACAT
1 ATACATACAT
*
8454651 ACACATACACCT
1 ATACATACA--T
* *
8454663 ACACATACAC
1 ATACATACAT
8454673 ATAC--ACA-
1 ATACATACAT
* *
8454680 ACACATACAC
1 ATACATACAT
8454690 ATAC--ACAT
1 ATACATACAT
* *
8454698 ACACATACAC
1 ATACATACAT
* *
8454708 A-ACACACAC
1 ATACATACAT
* *
8454717 ATACCTACAC
1 ATACATACAT
8454727 ATACA-ACAT
1 ATACATACAT
*
8454736 ACACATACAT
1 ATACATACAT
* *
8454746 ACACATACAC
1 ATACATACAT
*
8454756 ATAC--ACAG
1 ATACATACAT
*
8454764 ACACATACACAT
1 ATACAT--ACAT
* *
8454776 ACACATACAC
1 ATACATACAT
* *
8454786 ACACACACAT
1 ATACATACAT
* * *
8454796 ACACACACAC
1 ATACATACAT
* * *
8454806 ACACACACAC
1 ATACATACAT
* * *
8454816 ACCACACACAC
1 A-TACATACAT
* * *
8454827 ACCACACACAC
1 A-TACATACAT
* *
8454838 ACACA-ACAC
1 ATACATACAT
* *
8454847 ACACACACAT
1 ATACATACAT
* *
8454857 ACACATACAC
1 ATACATACAT
*
8454867 ATCACATACAC
1 AT-ACATACAT
8454878 ATAC--ACAT
1 ATACATACAT
* *
8454886 ACACATACAC
1 ATACATACAT
*
8454896 ATACCATACAC
1 ATA-CATACAT
8454907 ATAC--ACAT
1 ATACATACAT
* *
8454915 -CACATACACA
1 ATACATACA-T
* *
8454925 ACACATACAC
1 ATACATACAT
*
8454935 ATACCATACAC
1 ATA-CATACAT
*
8454946 ATACCATACAC
1 ATA-CATACAT
*
8454957 A-ACACACAT
1 ATACATACAT
* *
8454966 ACACATAC-C
1 ATACATACAT
*
8454975 ATACATACAC
1 ATACATACAT
8454985 ATAC--ACAT
1 ATACATACAT
*
8454993 ACACATCCACAT
1 ATACAT--ACAT
* * *
8455005 ACACAGACAC
1 ATACATACAT
*
8455015 ATACACACAT
1 ATACATACAT
*
8455025 ACACATACCAT
1 ATACATA-CAT
* *
8455036 ACACATACAC
1 ATACATACAT
8455046 ATAC--ACAT
1 ATACATACAT
*
8455054 A-ACATACAC
1 ATACATACAT
*
8455063 ATCCACATACAC
1 AT--ACATACAT
8455075 ATAC--ACAT
1 ATACATACAT
* *
8455083 ACACATACAC
1 ATACATACAT
8455093 ATAC--ACAT
1 ATACATACAT
*
8455101 ACACATACACAT
1 ATACAT--ACAT
*
8455113 ACACATACACT
1 ATACATACA-T
* *
8455124 ACACATACAC
1 ATACATACAT
8455134 ATAC--ACAT
1 ATACATACAT
*
8455142 ACACATACAT
1 ATACATACAT
* *
8455152 ACACATACAC
1 ATACATACAT
*
8455162 A-ACCATACAC
1 ATA-CATACAT
*
8455172 ATACATACAC
1 ATACATACAT
8455182 ATAC--ACAT
1 ATACATACAT
*
8455190 ACACATACCAT
1 ATACATA-CAT
* *
8455201 ACACATACAC
1 ATACATACAT
8455211 ATAC--ACAT
1 ATACATACAT
* *
8455219 ACACATACAC
1 ATACATACAT
8455229 ACTAC--ACAT
1 A-TACATACAT
* *
8455238 ACACATACAC
1 ATACATACAT
*
8455248 ATACCATACAC
1 ATA-CATACAT
* *
8455259 ACACACAC-T
1 ATACATACAT
* *
8455268 ACACATACAC
1 ATACATACAT
8455278 ATAC--ACAT
1 ATACATACAT
** *
8455286 CCACATACAC
1 ATACATACAT
8455296 ATAC--ACAT
1 ATACATACAT
* *
8455304 ACACACACAT
1 ATACATACAT
* *
8455314 ACACATACAC
1 ATACATACAT
8455324 ATAC--ACAT
1 ATACATACAT
*
8455332 ACACATACCAT
1 ATACATA-CAT
* *
8455343 ACACATACAC
1 ATACATACAT
*
8455353 ATACTACACAT
1 ATAC-ATACAT
*
8455364 ACACATACACAT
1 ATACAT--ACAT
* *
8455376 ACACATACAC
1 ATACATACAT
*
8455386 ATACACACAT
1 ATACATACAT
*
8455396 ACACAT-CACT
1 ATACATACA-T
* *
8455406 ACACATACCAC
1 ATACATA-CAT
*
8455417 ATACACACAT
1 ATACATACAT
*
8455427 ACACATACACAT
1 ATACAT--ACAT
*
8455439 ACACATACCAT
1 ATACATA-CAT
* *
8455450 ACACATACAC
1 ATACATACAT
8455460 ATAC--ACAT
1 ATACATACAT
* *
8455468 ACACATACAC
1 ATACATACAT
8455478 ATAC--ACAT
1 ATACATACAT
* *
8455486 ACACATACAC
1 ATACATACAT
8455496 ATAC--ACAT
1 ATACATACAT
*
8455504 ACACATACA-
1 ATACATACAT
8455513 ATAC--ACAT
1 ATACATACAT
8455521 A-ACATACACT
1 ATACATACA-T
*
8455531 ACACATACACAT
1 ATACAT--ACAT
*
8455543 ACACATCACAT
1 ATACAT-ACAT
* *
8455554 ACACATACAC
1 ATACATACAT
8455564 ATAC--ACAT
1 ATACATACAT
* *
8455572 ACACATACAC
1 ATACATACAT
8455582 ATAC--ACAT
1 ATACATACAT
* *
8455590 ACACATACAC
1 ATACATACAT
*
8455600 ATACATACAC
1 ATACATACAT
8455610 ATAC--ACAT
1 ATACATACAT
* *
8455618 ACACATACAC
1 ATACATACAT
8455628 ATACACCTCACAT
1 ATACA--T-ACAT
* *
8455641 ACACATACAC
1 ATACATACAT
8455651 ATAC--ACAT
1 ATACATACAT
* *
8455659 ACACATACAC
1 ATACATACAT
8455669 ATAC--ACAT
1 ATACATACAT
* *
8455677 ACACATACAC
1 ATACATACAT
* *
8455687 ACACATACACAA
1 ATACAT--ACAT
* *
8455699 ACACATACAC
1 ATACATACAT
8455709 ATACATCACAT
1 ATACAT-ACAT
* *
8455720 ACACACACAT
1 ATACATACAT
* *
8455730 ACACATACAC
1 ATACATACAT
8455740 ATAC--ACAT
1 ATACATACAT
* *
8455748 ACACATACAC
1 ATACATACAT
8455758 ATACCATACACAT
1 ATA-CAT--ACAT
*
8455771 ACACATACACT
1 ATACATACA-T
* *
8455782 ACACATACAC
1 ATACATACAT
*
8455792 ATACCATACAC
1 ATA-CATACAT
*
8455803 ATACA-ACAC
1 ATACATACAT
*
8455812 ATACACACAT
1 ATACATACAT
* *
8455822 ACACATACAC
1 ATACATACAT
8455832 ATAC--ACAT
1 ATACATACAT
*
8455840 ACACATAC--
1 ATACATACAT
* *
8455848 ACACACACAT
1 ATACATACAT
* *
8455858 ACACATACAC
1 ATACATACAT
8455868 ATAC--ACAT
1 ATACATACAT
* *
8455876 ACACACACAT
1 ATACATACAT
* *
8455886 ACACATACAC
1 ATACATACAT
8455896 ATAC--ACAT
1 ATACATACAT
* *
8455904 ACACATACAC
1 ATACATACAT
8455914 ATAC--ACAT
1 ATACATACAT
* *
8455922 ACACATACAC
1 ATACATACAT
*
8455932 ATAC-CAC-T
1 ATACATACAT
* *
8455940 ACACATACAC
1 ATACATACAT
*
8455950 ATCACATACAC
1 AT-ACATACAT
8455961 ATAC--ACAT
1 ATACATACAT
* *
8455969 ACACATACAC
1 ATACATACAT
8455979 ATAC--ACAT
1 ATACATACAT
* *
8455987 ACACATACAC
1 ATACATACAT
8455997 ATAC--ACAT
1 ATACATACAT
*
8456005 ACACATACACT
1 ATACATACA-T
* *
8456016 ACACATACAC
1 ATACATACAT
* *
8456026 ATACACAACAC
1 ATACA-TACAT
8456037 ATAC--ACAT
1 ATACATACAT
*
8456045 ACACATAAACAT
1 ATACAT--ACAT
* *
8456057 ACACATACAC
1 ATACATACAT
8456067 ATAC--ACAT
1 ATACATACAT
* *
8456075 ACACATACAC
1 ATACATACAT
8456085 ATACATACAT
1 ATACATACAT
* *
8456095 ACACATACCCAC
1 ATACATA--CAT
8456107 ATAC--ACAT
1 ATACATACAT
* *
8456115 ACACATACAC
1 ATACATACAT
8456125 ATAC--ACAT
1 ATACATACAT
* *
8456133 ACACATACAC
1 ATACATACAT
8456143 ATAC--ACAT
1 ATACATACAT
* *
8456151 ACACATACAC
1 ATACATACAT
8456161 ATAC--ACAT
1 ATACATACAT
* *
8456169 ACACATACAC
1 ATACATACAT
8456179 ATAC--ACAT
1 ATACATACAT
* *
8456187 ACACATACAC
1 ATACATACAT
8456197 ATAC--ACAT
1 ATACATACAT
*
8456205 ACACATAC--
1 ATACATACAT
8456213 ATACATACAT
1 ATACATACAT
8456223 ATACATATCAT
1 ATACATA-CAT
8456234 ATACATACAT
1 ATACATACAT
8456244 CTTGGGATAT
Statistics
Matches: 4313, Mismatches: 716, Indels: 918
0.73 0.12 0.15
Matches are distributed among these distances:
5 2 0.00
6 1 0.00
7 37 0.01
8 657 0.15
9 215 0.05
10 1650 0.38
11 670 0.16
12 997 0.23
13 35 0.01
14 49 0.01
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (10 bp):
ATACATACAT
Found at i:8456240 original size:6 final size:6
Alignment explanation
Indices: 8451653--8456227 Score: 5967
Period size: 6 Copynumber: 783.8 Consensus size: 6
8451643 ACATATGCAT
* * ** *
8451653 ATACAC ATACAC ATACAT ATACAT ATGTAT ATACAC AT--AC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8451699 AT--AC ATATAC ATACAT ATATAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8451745 ATACAC ATACAC ATACAC ATACAC ATACAT ATACAT ATACAC ATACAT
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8451793 ATACAC ATACAT ATACAC ATACAT ATACAC ATACAT ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* *
8451841 ATACAC ATACATAC ACACAT ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATAC--AC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8451891 -TACAC ATACAC ATACAC AT--AC ATACAC AT--AC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8451934 ATACAC ATACAC ATAC-C ATACAC A-ACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8451980 ATACAC ATACAC ATACAC ATACAC ATAC-C ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * *
8452027 ATACAC AT--AC ATACAT ATACAT ATACAT ATACAT ATATAC ATATAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * *
8452073 ATATAC ATATAC AT--AC ATA-AC ATATAC ATATAC ATATAC ATATAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * *
8452118 ATATAC ATACAT ATACAT ATACAT ATATAAC ATATAC AT--AC ATA-AC
1 ATACAC ATACAC ATACAC ATACAC ATA-CAC ATACAC ATACAC ATACAC
* * * * *
8452164 ATATAC ATACAT ATACTATAC ATATAC ATACAT ATACAT ATAC-C ATACAC
1 ATACAC ATACAC ATAC---AC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * * *
8452214 ATACAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * *
8452262 ATACAC ATACAT ATACAG ATACAG ATACAC AT-CAT ATACACC ATACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACA-C AT--ACAC
*
8452312 ATACAC ATACAC -TATAC ATACAC ATACAC ATAC-C ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8452358 -TACAC ATACAC AT-CAC ATAACAC ATACAT AT-CAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC AT-ACAC ATACAC ATACAC ATACAC ATACAC
* *
8452404 ATACAC ATACAC ACACAC ACAACAC ATACAC ATACAC ATACAC -TACAC
1 ATACAC ATACAC ATACAC A-TACAC ATACAC ATACAC ATACAC ATACAC
*
8452452 ATACAC ATACAC ATACAC ATACAC ATACAC ACACAAC ACTACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATAC-AC A-TACAC ATACAC
8452502 ATACAC ATACAC ATACAC -TACAC ATACAC ATACAC ATACAC AT--AC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8452547 ATACAC ATACAC ATA-AC ATACAC ATACAC -TACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8452593 ATACAC ATACAC ATACAC ACACATAC ATACAC ATACAC ATACAC AT--AC
1 ATACAC ATACAC ATACAC ATAC--AC ATACAC ATACAC ATACAC ATACAC
* *
8452641 ATACAC A-AC-C ATACAC ATACAC ATACAT ACACCAC ATACAC ATACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATA-CAC ATACAC AT--ACAC
*
8452690 ATACAC ATATAC ATACAC ATACAC ATAC-C ATACAC AT--AC ATA-AC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8452734 ATAC-C ATACAC ATACAC ACTACAC ATACAC ATACAC ATTACAC AT--AC
1 ATACAC ATACAC ATACAC A-TACAC ATACAC ATACAC A-TACAC ATACAC
*
8452781 ATACAC ATACAC ATACAC ATA-AC ATACAC --ACCC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8452826 --ACAC ATACAC ATACAC ATATACC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACA-C ATACAC ATACAC ATACAC ATACAC
*
8452873 ---CAC ATACAC ATACAC ATACAC CTACAC ATACA- ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8452917 ATACAC ATACAC ATACAC ATACAC ATACAC AT-CTAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATAC-AC ATACAC ATACAC
8452965 ATACA- ATACAC ATACAC ATACAC AT--AC ATACAC AT--AC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453008 ATACAC ATACAC ATATACAC ATAC-C AT--AC ATACAC ATAC-C ATACAC
1 ATACAC ATACAC --ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453054 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8453102 ATACAC ATACAC ATAGCAC --ACAC ACACAC ACACAC ACACAC ATACAC
1 ATACAC ATACAC ATA-CAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * * * *
8453149 ACACAC ACA-AC ACACAC ACACAC ACACAC ACACAC ACACAC ACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * *
8453196 A-ACAC A-ACAC ACAC-C ACACAC ACACAC ACACAC ACACAC ACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453241 ATAC-C ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453288 ATACAC ATACAC ATAC-C ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453335 A-AC-C ATACAC ATACAC --ACAC ATACAC ATACAC ATACAC ATACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC AT--ACAC
8453381 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453429 ATACAC ATACAC ATACAC ATACAC ATACACAC ATACAC ATAC-C ATACAC
1 ATACAC ATACAC ATACAC ATACAC AT--ACAC ATACAC ATACAC ATACAC
8453478 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8453526 ATACAC CTACAC ATACAC ATACAC ATACAC ATACAC AT--AC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453572 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATAC-C ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8453619 ATACAC ATACAC --AGAC ATACAC ATACACC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACA-C ATACAC ATACAC ATACAC
* * * * *
8453666 ATACCAC ACAACAC ACACAC ACACAC ACACAC A-ACAC --ACAC ACACAC
1 ATA-CAC A-TACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * * * *
8453713 ACACAC ACACAC ACACAC ATACAC ACACAC ACACAC ACACAC ACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8453761 ACACAC ACACAC ACACAC ATACAC ATACAC ATAC-C ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453808 ATACAC ATACAC ATAC-C ATACAC ATACAC ATA-AC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8453854 ATACAC ATACAC AT--AC ATACAC ATAC-C ATACAC ATAC-C ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8453898 ATACAC A-ACAC ATACAC ATACACAC ATACAC ATACAC --AGAC ATACA-
1 ATACAC ATACAC ATACAC AT--ACAC ATACAC ATACAC ATACAC ATACAC
8453944 ATACAC ATACAC ATAC-C A-ACAC ATAC-C ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8453989 ATACAC ATACAC ATACACAC ACACAC ATAC-C ATACAC ATACAC -TACAC
1 ATACAC ATACAC AT--ACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454037 AT--AC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454083 ATACAC -TACAC -TACAC ATACAC ATACAC -TACAC ATACAC --AC-C
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454125 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454173 ATACAC ATACAC ATACAC --ACAC ATACAC ATACAC A-ACAC ATAC-C
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454217 ATAC-C ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454264 A-ACAC ATACAC ATACAC AT--AC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454309 ATACAC ATACAC --ACAC ATACAC AT--AC -TACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8454352 A-CCAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454399 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC --ACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454445 -TACAC ATAC-C ATACAC ATACAC ATACACAC ATACAC ATACAC ATACCCAC
1 ATACAC ATACAC ATACAC ATACAC AT--ACAC ATACAC ATACAC ATA--CAC
* * * *
8454495 ATACAC ATACAC AGACAC ATACCAC ACACAC ATACAC AACACAC ACACAC
1 ATACAC ATACAC ATACAC ATA-CAC ATACAC ATACAC -ATACAC ATACAC
* * *
8454545 ACACAC ATAC-C ATACACAC ATACAC CTACAC A-ACAC ACACACC ATACAC
1 ATACAC ATACAC AT--ACAC ATACAC ATACAC ATACAC ATACA-C ATACAC
* *
8454594 ATACAC --ACAC ATACAC ATACAC ATACAC --AC-C ACACAC ACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* *
8454637 ACACAC ATACAC ATACAC ATACAC CTACAC ATACAC ATACAC A-ACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8454684 ATACAC ATACAC ATACAC ATACAC A-ACAC --ACAC ATAC-C -TACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8454727 ATACAAC ATACAC AT--AC ATACAC ATACAC ATACAC AGACAC ATACAC
1 ATAC-AC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * *
8454774 ATACAC ATACACAC ACACAC ATACAC ACACAC ACACAC ACACAC -CACAC
1 ATACAC AT--ACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * * * *
8454823 ACACACC ACACAC ACACAC AACACAC ACACAC ATACAC ATACAC AT-CAC
1 ATACA-C ATACAC ATACAC -ATACAC ATACAC ATACAC ATACAC ATACAC
8454872 ATACAC ATACAC ATACAC ATACAC ATAC-C ATACAC ATACAC AT-CAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8454918 ATACAC A-ACAC ATACAC ATAC-C ATACAC ATAC-C ATACAC AACACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC -ATACAC
*
8454964 ATACAC ATAC-C AT--AC ATACAC ATACAC ATACAC ATCCAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8455009 AGACAC ATACACAC ATACAC ATAC-C ATACAC ATACAC ATACAC ATA-AC
1 ATACAC AT--ACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8455057 ATACAC ATCCAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455105 ATACAC ATACAC ATACAC -TACAC ATACAC ATACAC ATACAC AT--AC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455150 ATACAC ATACAC A-AC-C ATACAC AT--AC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455194 ATAC-C ATACAC ATACAC ATACAC ATACAC ATACAC ACTACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC A-TACAC ATACAC
* *
8455242 ATACAC ATAC-C ATACAC ACACAC ACTACAC ATACAC ATACAC ATCCAC
1 ATACAC ATACAC ATACAC ATACAC A-TACAC ATACAC ATACAC ATACAC
8455290 ATACAC ATACAC ATACAC --ACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455336 ATAC-C ATACAC ATACAC AT--AC -TACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455380 ATACAC ATACACAC ATACAC AT-CAC -TACAC ATACCAC ATACACAC ATACAC
1 ATACAC AT--ACAC ATACAC ATACAC ATACAC ATA-CAC AT--ACAC ATACAC
8455431 ATACAC ATACAC ATAC-C ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455478 ATACAC ATACAC ATACAC ATACAC ATACAC ATACA- ATACAC ATA-AC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455524 ATACAC -TACAC ATACAC ATACAC AT-CAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455570 ATACAC ATACAC ATACAC ATACAC ATACAC AT--AC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8455616 ATACAC ATACAC ATACAC CT-CAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8455663 ATACAC ATACAC ATACAC ATACAC --ACAC ATACAC AAACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455709 AT--AC AT-CAC ATACAC --ACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455752 ATACAC ATAC-C ATACAC ATACAC ATACAC -TACAC ATACAC ATAC-C
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
* * *
8455797 ATACAC ATACA- ACACAT ACACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8455844 ATACAC ACACAC ATACAC ATACAC ATACAC ATACAC --ACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455890 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATAC-C
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455937 ACTACAC ATACAC AT-CAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 A-TACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8455985 ATACAC ATACAC ATACAC ATACAC ATACAC -TACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8456032 A-ACAC ATACAC ATACAC ATAAAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
8456079 ATACAC ATACATAC ATACAC ATACCCAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATAC--AC ATACAC ATA--CAC ATACAC ATACAC ATACAC ATACAC
8456131 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC ATACAC
*
8456179 ATACAC ATACAC ATACAC ATACAC ATACAC ATACATAC ATACAT ATACA
1 ATACAC ATACAC ATACAC ATACAC ATACAC ATAC--AC ATACAC ATACA
8456228 TATCATATAC
Statistics
Matches: 4187, Mismatches: 130, Indels: 504
0.87 0.03 0.10
Matches are distributed among these distances:
3 7 0.00
4 174 0.04
5 449 0.11
6 3324 0.79
7 119 0.03
8 106 0.03
9 8 0.00
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.16
Consensus pattern (6 bp):
ATACAC
Found at i:8459724 original size:16 final size:16
Alignment explanation
Indices: 8459703--8459734 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8459693 AGATCGACTC
8459703 AGAGATTTCATTCTGT
1 AGAGATTTCATTCTGT
8459719 AGAGATTTCATTCTGT
1 AGAGATTTCATTCTGT
8459735 GTCCCTTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (16 bp):
AGAGATTTCATTCTGT
Found at i:8464801 original size:6 final size:6
Alignment explanation
Indices: 8464790--8464827 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
8464780 GACACGTATT
8464790 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
8464828 CGAGACGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.32, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:8465461 original size:21 final size:21
Alignment explanation
Indices: 8465436--8465588 Score: 149
Period size: 21 Copynumber: 7.4 Consensus size: 21
8465426 ATTTTGGACT
8465436 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
8465457 ATCGCAACGAATTTAGAAT-A
1 ATCGCAACGAACTTGGAATAA
* * *
8465477 ATCGTAACGCGAAC-TCGACT--
1 ATCGCAA--CGAACTTGGAATAA
8465497 ATCGCAACGAA-TTGGAATAA
1 ATCGCAACGAACTTGGAATAA
*
8465517 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
* *
8465538 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAACTTGGAATAA
8465559 ATCGCAACGAACTTGGAATAA
1 ATCGCAACGAACTTGGAATAA
8465580 ATCGCAACG
1 ATCGCAACG
8465589 TGAACTTGAA
Statistics
Matches: 108, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
18 8 0.07
19 10 0.09
20 24 0.22
21 53 0.49
22 4 0.04
23 9 0.08
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGAACTTGGAATAA
Found at i:8465567 original size:42 final size:42
Alignment explanation
Indices: 8465517--8465607 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
8465507 ATTGGAATAA
*
8465517 ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCG-ACT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTT-GAACT
*
8465559 ATCGCAACGAACTTGGAATAAATCGCAACGTGAACTTGAACT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGAACT
8465601 ATCGCAA
1 ATCGCAA
8465608 TGCGAATATG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (42 bp):
ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTGAACT
Found at i:8465604 original size:21 final size:21
Alignment explanation
Indices: 8465538--8465607 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
8465528 TTTGGAATAA
8465538 ATCGCAACGCGAACTTCG-ACT
1 ATCGCAACG-GAACTTCGAACT
*
8465559 ATCGCAAC-GAACTTGGAA-T
1 ATCGCAACGGAACTTCGAACT
8465578 AAATCGCAACGTGAACTT-GAACT
1 --ATCGCAACG-GAACTTCGAACT
8465601 ATCGCAA
1 ATCGCAA
8465608 TGCGAATATG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
19 8 0.19
20 1 0.02
21 23 0.55
22 3 0.07
23 7 0.17
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGGAACTTCGAACT
Found at i:8481962 original size:19 final size:19
Alignment explanation
Indices: 8481940--8481988 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
8481930 TAAATGATTA
*
8481940 AATTAATATATTTCATAAT
1 AATTAATATATTTAATAAT
**
8481959 AATTTTTATATTTAATAAT
1 AATTAATATATTTAATAAT
8481978 -A-TAATATATTT
1 AATTAATATATTT
8481989 TTAATAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 8 0.32
18 1 0.04
19 16 0.64
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTAATATATTTAATAAT
Found at i:8482667 original size:11 final size:12
Alignment explanation
Indices: 8482645--8482672 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8482635 CTTAACTGCG
8482645 AAAAATTAAAAA
1 AAAAATTAAAAA
8482657 AAAAATTAAAAA
1 AAAAATTAAAAA
8482669 AAAA
1 AAAA
8482673 CTCGATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAATTAAAAA
Found at i:8484456 original size:37 final size:40
Alignment explanation
Indices: 8484415--8484495 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 40
8484405 TATAAATGAA
8484415 ATATG-TTTTCAAAAAACCT-TTTTAA-AACTATA-T-ATAT
1 ATATGATTTTCAAAAAA--TATTTTAAGAACTATACTAATAT
8484452 ATATGATTTTCAAAAAATATTTTAAGAACTATACTAATAT
1 ATATGATTTTCAAAAAATATTTTAAGAACTATACTAATAT
8484492 ATAT
1 ATAT
8484496 ATATATATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
36 1 0.03
37 11 0.28
38 18 0.46
39 1 0.03
40 8 0.21
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.42
Consensus pattern (40 bp):
ATATGATTTTCAAAAAATATTTTAAGAACTATACTAATAT
Found at i:8484495 original size:2 final size:2
Alignment explanation
Indices: 8484488--8484574 Score: 167
Period size: 2 Copynumber: 44.0 Consensus size: 2
8484478 AACTATACTA
8484488 AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8484529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8484571 AT AT
1 AT AT
8484575 TCAAATATCA
Statistics
Matches: 84, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 83 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8484598 original size:32 final size:32
Alignment explanation
Indices: 8484562--8484673 Score: 109
Period size: 36 Copynumber: 3.3 Consensus size: 32
8484552 TATATATATA
* *
8484562 TATATATATATATTCAAATATCA-TTTCAAAAC
1 TATATATATAT-TTCAAAAATAATTTTCAAAAC
*
8484594 TATATATATATTTTAAAAATAATTTTCAAAAC
1 TATATATATATTTCAAAAATAATTTTCAAAAC
* * *
8484626 TAATATAAACTTATTTTTAAAAATAATTTTTAAAAC
1 T-ATATATA--TA-TTTCAAAAATAATTTTCAAAAC
8484662 TATATAATATAT
1 TATAT-ATATAT
8484674 ATATATATTA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
31 8 0.12
32 21 0.31
33 7 0.10
34 2 0.03
35 6 0.09
36 24 0.35
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (32 bp):
TATATATATATTTCAAAAATAATTTTCAAAAC
Found at i:8484667 original size:35 final size:32
Alignment explanation
Indices: 8484585--8484673 Score: 115
Period size: 36 Copynumber: 2.6 Consensus size: 32
8484575 TCAAATATCA
*
8484585 TTTCAAAACTATATATATATTTTAAAAATAAT
1 TTTCAAAACTATATAAATATTTTAAAAATAAT
8484617 TTTCAAAACTAATATAAACTTATTTTTAAAAATAAT
1 TTTCAAAACT-ATATAAA--TA-TTTTAAAAATAAT
*
8484653 TTTTAAAACTATATAATATAT
1 TTTCAAAACTATATAA-ATAT
8484674 ATATATATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
32 10 0.20
33 7 0.14
34 2 0.04
35 8 0.16
36 23 0.46
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (32 bp):
TTTCAAAACTATATAAATATTTTAAAAATAAT
Found at i:8484908 original size:39 final size:37
Alignment explanation
Indices: 8484827--8485047 Score: 161
Period size: 37 Copynumber: 6.2 Consensus size: 37
8484817 AATACTCCAC
* * *
8484827 TATATATACTATTTTTTAAAAATAATTTTC-AAAC--TA
1 TATATATA-TATATTTTCAAAAT-GTTTTCAAAACTATA
8484863 TA-ATATATATATTTTCAAAGATTGTTTTCAAAAC--TA
1 TATATATATATATTTTCAAA-A-TGTTTTCAAAACTATA
*
8484899 TATATATATATA--TT----A--TATTCAAAACTATA
1 TATATATATATATTTTCAAAATGTTTTCAAAACTATA
* **
8484928 TATTATATATATGTTTTCAAAATGTTTT-AAAACCCTA
1 TA-TATATATATATTTTCAAAATGTTTTCAAAACTATA
*
8484965 TATATATATAT-TTTTTAAAATGTTTTCAAAACTATA
1 TATATATATATATTTTCAAAATGTTTTCAAAACTATA
* *
8485001 TTATATATATATATATTT-TAAACGTTTTCAAAAACTATA
1 -TATATATATATAT-TTTCAAAATGTTTTC-AAAACTATA
8485040 TATATATA
1 TATATATA
8485048 ATTTCAAAAA
Statistics
Matches: 152, Mismatches: 13, Indels: 38
0.75 0.06 0.19
Matches are distributed among these distances:
27 9 0.06
29 4 0.03
30 10 0.07
32 2 0.01
34 10 0.07
35 27 0.18
36 28 0.18
37 29 0.19
38 21 0.14
39 12 0.08
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.47
Consensus pattern (37 bp):
TATATATATATATTTTCAAAATGTTTTCAAAACTATA
Found at i:8484946 original size:27 final size:26
Alignment explanation
Indices: 8484885--8484949 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 26
8484875 TTTCAAAGAT
8484885 TGTTTTCAAAACTATATATATATATA
1 TGTTTTCAAAACTATATATATATATA
8484911 T-TATATTCAAAACTATATATTATATATA
1 TGT-T-TTCAAAACTATATA-TATATATA
8484939 TGTTTTCAAAA
1 TGTTTTCAAAA
8484950 TGTTTTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
25 1 0.03
26 2 0.06
27 21 0.60
28 10 0.29
29 1 0.03
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (26 bp):
TGTTTTCAAAACTATATATATATATA
Found at i:8485157 original size:2 final size:2
Alignment explanation
Indices: 8485150--8485176 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8485140 ACAATTTAAA
8485150 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8485177 AAATAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8485670 original size:18 final size:17
Alignment explanation
Indices: 8485598--8485672 Score: 68
Period size: 18 Copynumber: 4.4 Consensus size: 17
8485588 ATCATTATTT
8485598 TTAT-TTTATTTTAGTA
1 TTATATTTATTTTAGTA
*
8485614 TCTATATATT-TTTTA-AA
1 T-TATAT-TTATTTTAGTA
8485631 TTATATTTAATATTTAGT-
1 TTATATTT-AT-TTTAGTA
8485649 TTATATTTCATTTTAGTA
1 TTATATTT-ATTTTAGTA
8485667 TTATAT
1 TTATAT
8485673 CGTTAAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
15 2 0.04
16 6 0.12
17 12 0.25
18 26 0.54
19 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (17 bp):
TTATATTTATTTTAGTA
Found at i:8490977 original size:20 final size:20
Alignment explanation
Indices: 8490952--8490999 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8490942 GTCAGAGTGT
*
8490952 GGCGGCGGACGGCTGACGGC
1 GGCGGCGGACGGCGGACGGC
* *
8490972 GGCGGCAGACGGCGGGCGGC
1 GGCGGCGGACGGCGGACGGC
*
8490992 GGCAGCGG
1 GGCGGCGG
8491000 CCAGCGGGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.10, C:0.29, G:0.58, T:0.02
Consensus pattern (20 bp):
GGCGGCGGACGGCGGACGGC
Found at i:8490989 original size:17 final size:16
Alignment explanation
Indices: 8490969--8491000 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8490959 GACGGCTGAC
8490969 GGCGGCGGCAGACGGCG
1 GGCGGCGGCAG-CGGCG
8490986 GGCGGCGGCAGCGGC
1 GGCGGCGGCAGCGGC
8491001 CAGCGGGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.31, G:0.59, T:0.00
Consensus pattern (16 bp):
GGCGGCGGCAGCGGCG
Found at i:8495644 original size:15 final size:14
Alignment explanation
Indices: 8495626--8495759 Score: 64
Period size: 14 Copynumber: 9.4 Consensus size: 14
8495616 CAATTAGAGC
8495626 AAAAAGAGAAAATAA
1 AAAAAGAGAAAA-AA
8495641 AAAAAGAGTAATAAAA
1 AAAAAGAG-AA-AAAA
*
8495657 GTAAAAGAGAAAAGAA
1 -AAAAAGAGAAAA-AA
8495673 AAAGAAG-GAAAAAA
1 AAA-AAGAGAAAAAA
** **
8495687 GCTAAA-AGAAAATT
1 -AAAAAGAGAAAAAA
*
8495701 AAAAA-A-AAAACA
1 AAAAAGAGAAAAAA
* *
8495713 ACAAAGAGCAAAAA
1 AAAAAGAGAAAAAA
*
8495727 GAAAAGA-AAAAAA
1 AAAAAGAGAAAAAA
8495740 GAAAAAGA-AACAAAA
1 -AAAAAGAGAA-AAAA
8495755 AAAAA
1 AAAAA
8495760 CAAAGAAAAA
Statistics
Matches: 91, Mismatches: 17, Indels: 23
0.69 0.13 0.18
Matches are distributed among these distances:
12 8 0.09
13 10 0.11
14 31 0.34
15 22 0.24
16 11 0.12
17 9 0.10
ACGTcount: A:0.77, C:0.04, G:0.14, T:0.05
Consensus pattern (14 bp):
AAAAAGAGAAAAAA
Found at i:8495656 original size:13 final size:15
Alignment explanation
Indices: 8495626--8495684 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 15
8495616 CAATTAGAGC
8495626 AAAAAGAGAAAATAA
1 AAAAAGAGAAAATAA
8495641 AAAAAGAGTAATAA-AA
1 AAAAAGAG-AA-AATAA
* *
8495657 GTAAAAGAGAAAAGAA
1 -AAAAAGAGAAAATAA
8495673 AAAGAAG-GAAAA
1 AAA-AAGAGAAAA
8495685 AAGCTAAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 17 0.46
16 11 0.30
17 9 0.24
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.07
Consensus pattern (15 bp):
AAAAAGAGAAAATAA
Found at i:8495663 original size:32 final size:30
Alignment explanation
Indices: 8495588--8495707 Score: 95
Period size: 32 Copynumber: 3.9 Consensus size: 30
8495578 ATTTTGTACA
**
8495588 AAAAAAGC--AAAGAGAAAATTAAAAAAAAC
1 AAAAAAGCTAAAAGAGAAAA-TAAAAAAAGG
* * *
8495617 AATTAGAGCAAAAAGAGAAAATAAAAAAAGAG
1 AA-AAAAGCTAAAAGAGAAAATAAAAAAAG-G
*
8495649 TAATAAAAG-TAAAAGAGAAAAGAAAAAGAAGG
1 -AA-AAAAGCTAAAAGAGAAAATAAAAA-AAGG
*
8495681 AAAAAAGCTAAAAGA-AAATTAAAAAAA
1 AAAAAAGCTAAAAGAGAAAATAAAAAAA
8495708 AAACAACAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
29 4 0.05
30 17 0.23
31 17 0.23
32 27 0.36
33 9 0.12
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.09
Consensus pattern (30 bp):
AAAAAAGCTAAAAGAGAAAATAAAAAAAGG
Found at i:8495693 original size:31 final size:32
Alignment explanation
Indices: 8495627--8495741 Score: 96
Period size: 32 Copynumber: 3.7 Consensus size: 32
8495617 AATTAGAGCA
*
8495627 AAAAGAGAAAATAAAAAAAGAGTAATAAAAGT
1 AAAAGAGAAAAGAAAAAAAGAGTAATAAAAGT
8495659 AAAAGAGAAAAGAAAAAGAAG-G-AA-AAAAGCT
1 AAAAGAGAAAAGAAAAA-AAGAGTAATAAAAG-T
** * ** * *
8495690 AAAAGA-AAATTAAAAAAAAAACAACAAAGAGC
1 AAAAGAGAAAAGAAAAAAAGAGTAATAAA-AGT
8495722 AAAA-AGAAAAGAAAAAAAGA
1 AAAAGAGAAAAGAAAAAAAGA
8495742 AAAAGAAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
29 2 0.03
30 13 0.19
31 12 0.18
32 35 0.52
33 5 0.07
ACGTcount: A:0.75, C:0.03, G:0.16, T:0.06
Consensus pattern (32 bp):
AAAAGAGAAAAGAAAAAAAGAGTAATAAAAGT
Found at i:8495739 original size:14 final size:15
Alignment explanation
Indices: 8495721--8495770 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
8495711 CAACAAAGAG
8495721 CAAAAAGAAAAG-AA
1 CAAAAAGAAAAGAAA
8495735 -AAAAAGAAAAAGAAA
1 CAAAAAG-AAAAGAAA
*
8495750 CAAAAA-AAAACAAA
1 CAAAAAGAAAAGAAA
*
8495764 GAAAAAG
1 CAAAAAG
8495771 GGACGAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 6 0.20
14 17 0.57
15 2 0.07
16 5 0.17
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
CAAAAAGAAAAGAAA
Found at i:8495768 original size:10 final size:10
Alignment explanation
Indices: 8495702--8495769 Score: 57
Period size: 10 Copynumber: 6.9 Consensus size: 10
8495692 AAGAAAATTA
8495702 AAAAAAAAAC
1 AAAAAAAAAC
* * *
8495712 AACAAAGAGC
1 AAAAAAAAAC
*
8495722 AAAAAGAAA-
1 AAAAAAAAAC
* *
8495731 AGAAAAAAAG
1 AAAAAAAAAC
*
8495741 AAAAAGAAAC
1 AAAAAAAAAC
8495751 AAAAAAAAAC
1 AAAAAAAAAC
*
8495761 AAAGAAAAA
1 AAAAAAAAA
8495770 GGGACGAGAA
Statistics
Matches: 43, Mismatches: 14, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
9 7 0.16
10 36 0.84
ACGTcount: A:0.82, C:0.07, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:8496880 original size:32 final size:32
Alignment explanation
Indices: 8496792--8496881 Score: 108
Period size: 32 Copynumber: 2.8 Consensus size: 32
8496782 AGAGGAACAA
* * *
8496792 TGGGGCATCTTTAAAGATTCAACAACAAATGT
1 TGGGGCATCTTTAGAGATTCAACATCAAATAT
* * *
8496824 TGGGGCATATTTGGAGATTCAACATCGAATAT
1 TGGGGCATCTTTAGAGATTCAACATCAAATAT
* *
8496856 TGGGACATCTTTAGATATTCAACATC
1 TGGGGCATCTTTAGAGATTCAACATC
8496882 CTGATGCGAA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (32 bp):
TGGGGCATCTTTAGAGATTCAACATCAAATAT
Found at i:8497275 original size:3 final size:3
Alignment explanation
Indices: 8497269--8497323 Score: 65
Period size: 3 Copynumber: 17.7 Consensus size: 3
8497259 TTAAAAAAAA
* * *
8497269 TAT TAT TAT TAT ATAT TAT TAT TAT TAT TGT TAT TTT TAT TAA TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8497315 TATT TAT TA
1 TA-T TAT TA
8497324 ATGTTGCAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8497308 original size:28 final size:28
Alignment explanation
Indices: 8497269--8497328 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 28
8497259 TTAAAAAAAA
*
8497269 TATTATTATTATATATTATTATTATTATTGT
1 TATTATTATTA-ATATTA-T-TTATTAATGT
*
8497300 TATTTTTATTAATATTATTTATTAATGT
1 TATTATTATTAATATTATTTATTAATGT
8497328 T
1 T
8497329 GCAGGCCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 10 0.37
29 1 0.04
30 6 0.22
31 10 0.37
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (28 bp):
TATTATTATTAATATTATTTATTAATGT
Found at i:8499032 original size:2 final size:2
Alignment explanation
Indices: 8499025--8499100 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
8499015 ATGTTTTAAA
8499025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8499067 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8499101 TCTTTGTTTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8504139 original size:20 final size:18
Alignment explanation
Indices: 8504100--8504135 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8504090 AATTTTTTTT
8504100 AAAAATATCCTTATTCTC
1 AAAAATATCCTTATTCTC
8504118 AAAAATATCCTTATTCTC
1 AAAAATATCCTTATTCTC
8504136 TCAATGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAATATCCTTATTCTC
Found at i:8504535 original size:22 final size:21
Alignment explanation
Indices: 8504501--8504541 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
8504491 ATAATTATTT
8504501 AAAAAATTAAATAAAAATACA
1 AAAAAATTAAATAAAAATACA
*
8504522 AAAAATATTTAATAAAAATA
1 AAAAA-ATTAAATAAAAATA
8504542 ATTTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAAATTAAATAAAAATACA
Found at i:8509150 original size:24 final size:24
Alignment explanation
Indices: 8509121--8509167 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
8509111 GAGAATAAGA
8509121 GGTGATAGTTGATAGGAGAATGAT
1 GGTGATAGTTGATAGGAGAATGAT
8509145 GGTGATAGTTGATAGGAGAATGA
1 GGTGATAGTTGATAGGAGAATGA
8509168 AGGAGATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (24 bp):
GGTGATAGTTGATAGGAGAATGAT
Found at i:8509565 original size:23 final size:23
Alignment explanation
Indices: 8509539--8509588 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
8509529 ATCAAACACA
* *
8509539 ATAACATATTAGGTAGCGTTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
8509562 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
8509585 ATAA
1 ATAA
8509589 TAAAATGGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:8509600 original size:87 final size:87
Alignment explanation
Indices: 8509485--8509673 Score: 283
Period size: 87 Copynumber: 2.2 Consensus size: 87
8509475 AATAACAAAT
*
8509485 TAGGTAGCACTTA-ATAATAAAATAGGTTAATTACT-AGAAACATTATCAAACACAATAACATAT
1 TAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGA-AAACATTATCAAACACAATAACATAT
* *
8509548 TAGGTAGCGTTTATATAATGTAA
65 TAGGCAGCGCTTATATAATGTAA
* * * **
8509571 TAGGTAGCGCTTATATAATAAAATGGGTTAATTACTGAAAATATTATTAAGTACAATAACATATT
1 TAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGAAAACATTATCAAACACAATAACATATT
8509636 AGGCAGCGCTTATATAATGTAA
66 AGGCAGCGCTTATATAATGTAA
8509658 TAGGTAGCGCTTATAT
1 TAGGTAGCGCTTATAT
8509674 TGACATATTC
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 12 0.13
87 80 0.86
88 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (87 bp):
TAGGTAGCGCTTATATAATAAAATAGGTTAATTACTGAAAACATTATCAAACACAATAACATATT
AGGCAGCGCTTATATAATGTAA
Found at i:8510057 original size:198 final size:199
Alignment explanation
Indices: 8509719--8510191 Score: 729
Period size: 198 Copynumber: 2.4 Consensus size: 199
8509709 GTAACATTAC
* *
8509719 AAATTTACTTATTACATTATAATTATCGGTTTCGATATTTTTGGGATCGATACAATTT--TAAAT
1 AAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGGGATCGATA-ATTTTAATAAAT
*
8509782 GTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGAAAAAAGTATCGACACAAACT
65 GTATCGACACTTTATGCGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACT
* * * *
8509847 TAAAACGTGTCGATACATTATGTATACGTATTTTCTCATAAAAC-TAATATATTTCTACCGGGTA
130 TAAAACGTGTCGATACATTATGTAGACCTATTTTATCATAAAACAT-ATATATTTCTACCGAGTA
*
8509911 TATTGT
194 CATTGT
* * * *
8509917 AAATTTACCTATTACATTGTAATTATCGGTTTGGAT-TTTTTGAGATCGATATTTTTAATAAATG
1 AAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGGGATCGATAATTTTAATAAATG
*
8509981 TATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
66 TATCGACACTTTATGCGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
*
8510046 AAAATGTGTCGATACATTATGTAGACCTATTTTATCATAAAACATATATATTTCTACCGAGTACA
131 AAAACGTGTCGATACATTATGTAGACCTATTTTATCATAAAACATATATATTTCTACCGAGTACA
8510111 TTGT
196 TTGT
* * *
8510115 AAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATG
1 AAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGGGATCGATAATTTTAATAAATG
* *
8510180 TATTGATACTTT
66 TATCGACACTTT
8510192 TAATAAATGT
Statistics
Matches: 250, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
196 3 0.01
197 14 0.06
198 196 0.78
199 37 0.15
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (199 bp):
AAATTTACCTATTACATTATAATTATCGGTTTCGATATTTTTGGGATCGATAATTTTAATAAATG
TATCGACACTTTATGCGTGCACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTT
AAAACGTGTCGATACATTATGTAGACCTATTTTATCATAAAACATATATATTTCTACCGAGTACA
TTGT
Found at i:8510189 original size:21 final size:21
Alignment explanation
Indices: 8510160--8510212 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
8510150 TGTTTTTGGG
8510160 ATCGATACTTTTAATAAATGT
1 ATCGATACTTTTAATAAATGT
*
8510181 ATTGATACTTTTAATAAATGT
1 ATCGATACTTTTAATAAATGT
*
8510202 ATCGAAACTTT
1 ATCGATACTTT
8510213 ATGTGTGCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (21 bp):
ATCGATACTTTTAATAAATGT
Found at i:8510351 original size:221 final size:220
Alignment explanation
Indices: 8509964--8510373 Score: 583
Period size: 221 Copynumber: 1.9 Consensus size: 220
8509954 TTTTGAGATC
* * *
8509964 GATATTTTTAATAAATGTATCGACACTTTATGTGTGCACCTCGTTGGACATTCATTCTGGAAAAA
1 GATACTTTTAATAAATGTATCGAAACTTTATGTGTGCACCTCGTTGAACATTCATTCTGGAAAAA
* *
8510029 AGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTATTTTATCATAAAACATATA
66 AGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTATTCTATCATAAAACAGATA
*
8510094 TATTTCTACCGAGTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGG
131 TATTTATACCGAGTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGG
8510159 GATCGATACTTTTAATAAATGTATT
196 GATCGATACTTTTAATAAATGTATT
*
8510184 GATACTTTTAATAAATGTATCGAAACTTTATGTGTGCACCTCGATT-AACATTTATTCTGGACAA
1 GATACTTTTAATAAATGTATCGAAACTTTATGTGTGCACCTCG-TTGAACATTCATTCTGGA-AA
* **** * * * *
8510248 AATGTATCGACA-TTTTTTAAATTTGTGTCGATACATTATGTAGACTTATTCTCTCATAAAACCG
64 AAAGTATCGACACAAACTTAAA-ATGTGTCGATACATTATGTAGACCTATTCTATCATAAAACAG
* ** *
8510312 GTATATTTATATTG-GTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGATGT
128 ATATATTTATACCGAG-TACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGT
8510374 AACATATGTG
Statistics
Matches: 166, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
220 60 0.36
221 106 0.64
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (220 bp):
GATACTTTTAATAAATGTATCGAAACTTTATGTGTGCACCTCGTTGAACATTCATTCTGGAAAAA
AGTATCGACACAAACTTAAAATGTGTCGATACATTATGTAGACCTATTCTATCATAAAACAGATA
TATTTATACCGAGTACATTGTAAATTTACCTATTACATTATAATTATCAGTTTCGATGTTTTTGG
GATCGATACTTTTAATAAATGTATT
Found at i:8510504 original size:30 final size:30
Alignment explanation
Indices: 8510470--8510554 Score: 81
Period size: 31 Copynumber: 2.8 Consensus size: 30
8510460 TTATAATAAA
8510470 TAAT-AAATATAAT-TTATAATAATTTTATTT
1 TAATAAAATATAATATTATAAT--TTTTATTT
8510500 TAATAAAATATAATAATTATAATTTTTA-TT
1 TAATAAAATATAAT-ATTATAATTTTTATTT
*
8510530 T-ATAAAATTATAGATATAAT-ATTTT
1 TAATAAAA-TATA-ATATTATAATTTT
8510555 AATAATAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
29 11 0.22
30 15 0.31
31 16 0.33
33 7 0.14
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (30 bp):
TAATAAAATATAATATTATAATTTTTATTT
Found at i:8510513 original size:40 final size:39
Alignment explanation
Indices: 8510437--8510532 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 39
8510427 CTCTCATTAT
8510437 AATATAA-TTATATATTATTATTATTATAATAAATAATA
1 AATATAATTTATATATTATTATTATTATAATAAATAATA
8510475 AATATAATTTATAATAATT-TTATT-TTAATAA-AATATAATA
1 AATATAATTTAT-AT-ATTATTATTATT-ATAATAA-ATAATA
* *
8510515 ATTATAATTTTTAT-TTAT
1 AATATAATTTATATATTAT
8510533 AAAATTATAG
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
37 2 0.04
38 8 0.16
39 10 0.20
40 27 0.54
41 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (39 bp):
AATATAATTTATATATTATTATTATTATAATAAATAATA
Found at i:8510562 original size:14 final size:14
Alignment explanation
Indices: 8510481--8510566 Score: 52
Period size: 14 Copynumber: 6.2 Consensus size: 14
8510471 AATAAATATA
**
8510481 ATTTATAATAATTTT
1 ATTT-TAATAATAAT
8510496 ATTTTAATAA-AAT
1 ATTTTAATAATAAT
** *
8510509 ATAATAATTATAAT
1 ATTTTAATAATAAT
* * *
8510523 -TTTTATTTATAAA
1 ATTTTAATAATAAT
*
8510536 ATTATAGAT-ATAAT
1 ATTTTA-ATAATAAT
8510550 ATTTTAATAATAAT
1 ATTTTAATAATAAT
8510564 ATT
1 ATT
8510567 GACATAAATA
Statistics
Matches: 54, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
13 19 0.35
14 30 0.56
15 5 0.09
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
ATTTTAATAATAAT
Found at i:8511272 original size:31 final size:29
Alignment explanation
Indices: 8511235--8511316 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 29
8511225 TAAAAAATAA
*
8511235 AAAATATAATTTATAATAA-TTTTATTTTAAT
1 AAAATATAA-TAATAATAATTTTTA-TTT-AT
*
8511266 AAAATATAATAATCATAATTTTTATTTAT
1 AAAATATAATAATAATAATTTTTATTTAT
8511295 AAAATTATAGAT-ATAAT-ATTTT
1 AAAA-TATA-ATAATAATAATTTT
8511317 AATAATAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
29 11 0.24
30 18 0.40
31 16 0.36
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
AAAATATAATAATAATAATTTTTATTTAT
Found at i:8511286 original size:30 final size:30
Alignment explanation
Indices: 8511235--8511299 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
8511225 TAAAAAATAA
*
8511235 AAAATATAATTTATAATAA-TTTTATTTTAAT
1 AAAATATAATTAATAATAATTTTTA-TTT-AT
*
8511266 AAAATATAA-TAATCATAATTTTTATTTAT
1 AAAATATAATTAATAATAATTTTTATTTAT
8511295 AAAAT
1 AAAAT
8511300 TATAGATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 7 0.23
30 10 0.32
31 14 0.45
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
AAAATATAATTAATAATAATTTTTATTTAT
Found at i:8511324 original size:14 final size:14
Alignment explanation
Indices: 8511243--8511343 Score: 57
Period size: 14 Copynumber: 7.2 Consensus size: 14
8511233 AAAAAATATA
**
8511243 ATTTATAATAATTTT
1 ATTT-TAATAATAAT
8511258 ATTTTAATAA-AAT
1 ATTTTAATAATAAT
** *
8511271 ATAATAATCATAAT
1 ATTTTAATAATAAT
* * *
8511285 -TTTTATTTATAAA
1 ATTTTAATAATAAT
*
8511298 ATTATAGAT-ATAAT
1 ATTTTA-ATAATAAT
8511312 ATTTTAATAATAAT
1 ATTTTAATAATAAT
8511326 A-TTTACATAAATAAT
1 ATTTTA-AT-AATAAT
8511341 ATT
1 ATT
8511344 AAATAAATTA
Statistics
Matches: 65, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
13 22 0.34
14 30 0.46
15 12 0.18
16 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (14 bp):
ATTTTAATAATAAT
Found at i:8511349 original size:14 final size:15
Alignment explanation
Indices: 8511307--8511351 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
8511297 AATTATAGAT
*
8511307 ATAATATTTTAAT-A
1 ATAATATTTAAATAA
*
8511321 ATAATATTTACATAA
1 ATAATATTTAAATAA
8511336 ATAATA-TTAAATAA
1 ATAATATTTAAATAA
8511350 AT
1 AT
8511352 TATTCTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATTTAAATAA
Found at i:8511689 original size:23 final size:23
Alignment explanation
Indices: 8511663--8511712 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
8511653 ACCTATTTTA
* * *
8511663 TTATGTAAGTGCTACCTATTACG
1 TTATATAAGCGCTACCTAATACG
*
8511686 TTATATAAGCGCTACCTAATATG
1 TTATATAAGCGCTACCTAATACG
8511709 TTAT
1 TTAT
8511713 TGTGCTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (23 bp):
TTATATAAGCGCTACCTAATACG
Found at i:8511775 original size:23 final size:23
Alignment explanation
Indices: 8511740--8511790 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
8511730 CCAGTAATTA
**
8511740 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
8511763 ACCTATTACATTATATAAGCGGT
1 ACCTATTACATTATATAAGCGCT
8511786 ACCTA
1 ACCTA
8511791 ATATGTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:8511793 original size:87 final size:87
Alignment explanation
Indices: 8511647--8511964 Score: 537
Period size: 87 Copynumber: 3.7 Consensus size: 87
8511637 ACAAATTAAA
* * *
8511647 TAATTAACCTATTTTATTATGTAAGTGCTACCTATTACGTTATATAAGCGCTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
8511712 TTGTGCTTGATAATGTTTCCAG
66 TTGTGCTTGATAATGTTTCCAG
*
8511734 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACCTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
* *
8511799 TTGTGCTTGACAATGTTTTCAG
66 TTGTGCTTGATAATGTTTCCAG
* *
8511821 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGGTACTTAATATGTTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
8511886 TTGTGCTTGATAATGTTTCCAG
66 TTGTGCTTGATAATGTTTCCAG
* **
8511908 TAATTAACATATTTTATTATATAAGCATTACCTATTACATTATATAAGCGCTACCTA
1 TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTA
8511965 TTACATTATA
Statistics
Matches: 217, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 217 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (87 bp):
TAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTA
TTGTGCTTGATAATGTTTCCAG
Found at i:8511862 original size:23 final size:23
Alignment explanation
Indices: 8511827--8511870 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
8511817 TCAGTAATTA
**
8511827 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
8511850 ACCTATTACATTATATAAGCG
1 ACCTATTACATTATATAAGCG
8511871 GTACTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:8511886 original size:23 final size:23
Alignment explanation
Indices: 8511836--8511880 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8511826 AACCTATTTT
*
8511836 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
* *
8511859 ATTATATAAGCGGTACTTAATA
1 ATTATATAAGCGCTACCTAATA
8511881 TGTTATTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:8511943 original size:23 final size:23
Alignment explanation
Indices: 8511923--8511998 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
8511913 AACATATTTT
**
8511923 ATTATATAAGCATTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
8511946 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
8511969 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTATTAC
*
8511992 ATCATAT
1 ATTATAT
8511999 TTGTACATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTATTAC
Found at i:8518875 original size:37 final size:35
Alignment explanation
Indices: 8518823--8518965 Score: 178
Period size: 37 Copynumber: 3.9 Consensus size: 35
8518813 TCCCATTACA
* * *
8518823 ATTTTTTAACAAACATCTACCAAACTTTGAAAAACT
1 ATTTTTAAAGAAACATTTACCAAACTTT-AAAAACT
8518859 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAAACT
1 ATTTTT-AAAGAAACATTTACCAAACTTT-AAAAACT
* *
8518896 ATTTTTAAAAGAAATATTTACTAAAACTTTAAAAACT
1 ATTTTT-AAAGAAACATTTAC-CAAACTTTAAAAACT
* *
8518933 ATTTTTAAAGAAATATTTACTAAACTTTAAAAA
1 ATTTTTAAAGAAACATTTACCAAACTTTAAAAA
8518966 TAACTTTTTA
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
35 12 0.12
36 20 0.20
37 59 0.60
38 7 0.07
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (35 bp):
ATTTTTAAAGAAACATTTACCAAACTTTAAAAACT
Found at i:8518950 original size:36 final size:37
Alignment explanation
Indices: 8518844--8518978 Score: 188
Period size: 37 Copynumber: 3.7 Consensus size: 37
8518834 AACATCTACC
* * *
8518844 AAACTTTGAAAAACTATTTTTCAAAGAAACATTTACC
1 AAACTTTGAAAAACTATTTTTAAAAGAAATATTTACT
8518881 AAACTTTGAAAAACTATTTTTAAAAGAAATATTTACT
1 AAACTTTGAAAAACTATTTTTAAAAGAAATATTTACT
8518918 AAAACTTT-AAAAACTATTTTT-AAAGAAATATTTACT
1 -AAACTTTGAAAAACTATTTTTAAAAGAAATATTTACT
8518954 AAACTTT-AAAAA-TAACTTTTTAAAA
1 AAACTTTGAAAAACT-A-TTTTTAAAA
8518979 ATTGATTGTC
Statistics
Matches: 91, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
34 1 0.01
35 13 0.14
36 20 0.22
37 50 0.55
38 7 0.08
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.36
Consensus pattern (37 bp):
AAACTTTGAAAAACTATTTTTAAAAGAAATATTTACT
Found at i:8523503 original size:2 final size:2
Alignment explanation
Indices: 8523496--8523540 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
8523486 ATAATCACTT
8523496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8523538 TA T
1 TA T
8523541 TTAGACACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8524717 original size:25 final size:25
Alignment explanation
Indices: 8524683--8524738 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
8524673 GAGTGTCATG
8524683 TTGGTTTTTTTGGCAAAGTCCCACA
1 TTGGTTTTTTTGGCAAAGTCCCACA
8524708 TTGGTTTTTTTGGCAAAGTCCCACA
1 TTGGTTTTTTTGGCAAAGTCCCACA
8524733 TTGGTT
1 TTGGTT
8524739 GTGTATAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (25 bp):
TTGGTTTTTTTGGCAAAGTCCCACA
Found at i:8535459 original size:21 final size:22
Alignment explanation
Indices: 8535426--8535496 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 22
8535416 CATCCACTCC
* * *
8535426 CCTCCTCCGCCAG-TCAGTTCT
1 CCTCCACCTCCAGTTCAGTTCA
8535447 CCTCCACCTCCAGTTC-GTTCA
1 CCTCCACCTCCAGTTCAGTTCA
*
8535468 CCACCACCTCCAGTTCAG-TCA
1 CCTCCACCTCCAGTTCAGTTCA
*
8535489 CCACCACC
1 CCTCCACC
8535497 ACTAGTCTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 41 0.93
22 3 0.07
ACGTcount: A:0.17, C:0.51, G:0.10, T:0.23
Consensus pattern (22 bp):
CCTCCACCTCCAGTTCAGTTCA
Found at i:8539990 original size:31 final size:31
Alignment explanation
Indices: 8539949--8540017 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 31
8539939 ATTAAACTAA
8539949 TCAATCTGTCGACTTAA-CTGAGTTAGGCAAT
1 TCAATCTGTCGACTTAACCT-AGTTAGGCAAT
* *
8539980 TCGATCTGTCGATTTAACCTAGTTAGGCAAT
1 TCAATCTGTCGACTTAACCTAGTTAGGCAAT
8540011 TCAATCT
1 TCAATCT
8540018 CCACGATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 32 0.94
32 2 0.06
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (31 bp):
TCAATCTGTCGACTTAACCTAGTTAGGCAAT
Found at i:8541710 original size:15 final size:15
Alignment explanation
Indices: 8541690--8541718 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8541680 ATCTGATTTG
8541690 AATAAAGATTTTAAA
1 AATAAAGATTTTAAA
8541705 AATAAAGATTTTAA
1 AATAAAGATTTTAA
8541719 CTTAAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AATAAAGATTTTAAA
Found at i:8543143 original size:6 final size:6
Alignment explanation
Indices: 8543132--8543157 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8543122 CTTCAATCGG
8543132 AAAGGA AAAGGA AAAGGA AAAGGA AA
1 AAAGGA AAAGGA AAAGGA AAAGGA AA
8543158 TGAGAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:8545755 original size:21 final size:21
Alignment explanation
Indices: 8545730--8545774 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
8545720 ATCAAGCCGA
*
8545730 TCCTCCACCCAGTTGAACCGC
1 TCCTCCAACCAGTTGAACCGC
*
8545751 TCCTCCAACCGGTTGAACCGC
1 TCCTCCAACCAGTTGAACCGC
8545772 TCC
1 TCC
8545775 ATAGTTTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.47, G:0.16, T:0.20
Consensus pattern (21 bp):
TCCTCCAACCAGTTGAACCGC
Found at i:8546510 original size:31 final size:30
Alignment explanation
Indices: 8546472--8546529 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
8546462 TAAATATTGA
8546472 AAAACTGA-AAGTTTAGGTACTAAGATATGCC
1 AAAACTGATAA-TTTAGGTACTAA-ATATGCC
*
8546503 AAAACTGATAATTTATGTACTAAATAT
1 AAAACTGATAATTTAGGTACTAAATAT
8546530 ATTAAGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 4 0.16
31 19 0.76
32 2 0.08
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (30 bp):
AAAACTGATAATTTAGGTACTAAATATGCC
Found at i:8552854 original size:16 final size:18
Alignment explanation
Indices: 8552819--8552862 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 18
8552809 TTCAGAGCCA
*
8552819 AATCATTCAGAGTCTTTG
1 AATCATTCAGAGTATTTG
8552837 AATCATTCA-A-TATTTG
1 AATCATTCAGAGTATTTG
8552853 AATCATTCAG
1 AATCATTCAG
8552863 CGCTTAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 14 0.58
17 1 0.04
18 9 0.38
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (18 bp):
AATCATTCAGAGTATTTG
Found at i:8557708 original size:22 final size:22
Alignment explanation
Indices: 8557680--8558300 Score: 686
Period size: 22 Copynumber: 28.5 Consensus size: 22
8557670 ATTTTAAAAT
8557680 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGAATTGA
8557702 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGAATTGA
***
8557724 TTTATTTTAAAATATGAAAAAA
1 TTTATTTTAAAATATGAATTGA
*
8557746 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
8557768 TTTATTTTAAAATAT-AGATTGA
1 TTTATTTTAAAATATGA-ATTGA
* *
8557790 TTTA-TAT-ATAT-TG-ATT--
1 TTTATTTTAAAATATGAATTGA
* *
8557806 TAT-TTT-AAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
**
8557826 TTTATTTTAAAATATGGAA-ACA
1 TTTATTTTAAAATAT-GAATTGA
*
8557848 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
**
8557870 TTTATTTTAAAATATGAA-AAA
1 TTTATTTTAAAATATGAATTGA
*
8557891 TTTTATTTTAAAATATGGATTGA
1 -TTTATTTTAAAATATGAATTGA
**
8557914 TTTATTTTAAAATATGGAA-AAA
1 TTTATTTTAAAATAT-GAATTGA
*
8557936 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
**
8557958 TTTATTTTAAAATATGAA-AAA
1 TTTATTTTAAAATATGAATTGA
*
8557979 TTTTATTTTAAAATATGGATTGA
1 -TTTATTTTAAAATATGAATTGA
***
8558002 TTTATTTTAAAATATGGAAAAAA
1 TTTATTTTAAAATAT-GAATTGA
*
8558025 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
**
8558047 TTTATTTTAAAATATGGAA-AAA
1 TTTATTTTAAAATAT-GAATTGA
*
8558069 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
* *
8558091 TTTATTTTAAAATATGGATAGA
1 TTTATTTTAAAATATGAATTGA
*
8558113 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
*
8558135 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
8558157 TTTATTTTAAAATATGAATTGA
1 TTTATTTTAAAATATGAATTGA
*
8558179 TTTATTTTAAAATATGGAA--AA
1 TTTATTTTAAAATAT-GAATTGA
*
8558200 TTTTATTTTAAAATATGGATTGA
1 -TTTATTTTAAAATATGAATTGA
*
8558223 TTTATTTTAAAATATGGAA--AA
1 TTTATTTTAAAATAT-GAATTGA
8558244 TTTTATTTTAAAATATTG-ATTGA
1 -TTTATTTTAAAATA-TGAATTGA
*
8558267 TTTATTTTAAAATATGGATTGA
1 TTTATTTTAAAATATGAATTGA
8558289 TTTATTTTAAAA
1 TTTATTTTAAAA
8558301 AAATTATTAT
Statistics
Matches: 507, Mismatches: 61, Indels: 62
0.80 0.10 0.10
Matches are distributed among these distances:
16 6 0.01
17 2 0.00
18 6 0.01
19 1 0.00
20 5 0.01
21 20 0.04
22 433 0.85
23 34 0.07
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
TTTATTTTAAAATATGAATTGA
Found at i:8557729 original size:44 final size:43
Alignment explanation
Indices: 8557675--8558300 Score: 834
Period size: 44 Copynumber: 14.4 Consensus size: 43
8557665 AATCTATTTT
* *
8557675 AAAATTTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
** * ***
8557718 AATTGATTTATTTTAAAATATGAAAAAATTTATTTTAAAATATGG
1 AA-AAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
*** * * *
8557763 ATTGATTTATTTTAAAATATAGATTGATTTA-TAT-ATAT-TG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
8557803 ----ATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
*
8557843 AAACATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
8557886 AAAAATTTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAA-TTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
8557931 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
8557974 AAAAATTTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAA-TTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
8558019 AAAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 -AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
8558064 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
* *
8558108 ATAGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
*** *
8558152 ATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
*
8558196 AAAATTTTATTTTAAAATATGGATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
* *
8558240 AAAATTTTATTTTAAAATATTGATTGATTTATTTTAAAATATGG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-G
***
8558284 ATTGATTTATTTTAAAA
1 AAAAATTTATTTTAAAA
8558301 AAATTATTAT
Statistics
Matches: 536, Mismatches: 32, Indels: 29
0.90 0.05 0.05
Matches are distributed among these distances:
36 26 0.05
37 2 0.00
38 3 0.01
39 1 0.00
40 2 0.00
41 1 0.00
42 3 0.01
43 15 0.03
44 430 0.80
45 48 0.09
46 5 0.01
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (43 bp):
AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATG
Found at i:8557767 original size:66 final size:66
Alignment explanation
Indices: 8557675--8558300 Score: 785
Period size: 66 Copynumber: 9.6 Consensus size: 66
8557665 AATCTATTTT
* *
8557675 AAAATTTTATTTTAAAATATGAATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
*
8557740 A
66 G
*
8557741 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-AGATTGATTTA---T-ATATAT
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGA-ATTGATTTATTTTAAAATAT
*
8557801 TG
65 GG
**
8557803 ----ATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGGAA-ACATTTATTTTAAAATAT
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-GAATTGATTTATTTTAAAATAT
8557863 GG
65 GG
*** *** *
8557865 ATTGATTTATTTTAAAATAT-GAAAAATTTTATTTTAAAATATGGATTGATTTATTTTAAAATAT
1 AAAAATTTATTTTAAAATATGGATTGA-TTTATTTTAAAATATGAATTGATTTATTTTAAAATAT
8557929 GG
65 GG
**
8557931 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAA-AAATTTTATTTTAAAATAT
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGA-TTTATTTTAAAATAT
8557995 GG
65 GG
*** *** *
8557997 ATTGATTTATTTTAAAATATGGAAAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT
1 AAAAATTTATTTTAAAATATGG-ATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATAT
8558062 GG
65 GG
* *
8558064 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGGATAGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
8558129 G
66 G
***
8558130 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
8558195 G
66 G
* *
8558196 AAAATTTTATTTTAAAATATGGATTGATTTATTTTAAAATATGGAA--AATTTTATTTTAAAATA
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATAT-GAATTGA-TTTATTTTAAAATA
*
8558259 TTG
64 TGG
***
8558262 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAA
1 AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAA
8558301 AAATTATTAT
Statistics
Matches: 486, Mismatches: 55, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
58 43 0.09
59 1 0.00
60 1 0.00
61 1 0.00
62 11 0.02
63 1 0.00
65 8 0.02
66 358 0.74
67 61 0.13
68 1 0.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (66 bp):
AAAAATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATG
G
Found at i:8557802 original size:14 final size:14
Alignment explanation
Indices: 8557779--8557808 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8557769 TTATTTTAAA
8557779 ATATAGATTGATTT
1 ATATAGATTGATTT
*
8557793 ATATATATTGATTT
1 ATATAGATTGATTT
8557807 AT
1 AT
8557809 TTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (14 bp):
ATATAGATTGATTT
Found at i:8558965 original size:20 final size:20
Alignment explanation
Indices: 8558942--8558980 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8558932 GGAATTGAAA
8558942 GTTAGAATATTG-AATTTGAT
1 GTTAGAAT-TTGAAATTTGAT
8558962 GTTAGAATTTGAAATTTGA
1 GTTAGAATTTGAAATTTGA
8558981 CTATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.44
Consensus pattern (20 bp):
GTTAGAATTTGAAATTTGAT
Found at i:8563533 original size:64 final size:64
Alignment explanation
Indices: 8563397--8563534 Score: 147
Period size: 64 Copynumber: 2.2 Consensus size: 64
8563387 GCACTAAGAG
* * * * ***
8563397 TGCAGCGATGCATCAAGTGCATTTGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCTGG
1 TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCAAA
* *
8563461 TGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCAT-G-AA
1 TGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATGGCAA
8563523 A
64 A
8563524 TGCATTCGATG
1 TGCA-TCGATG
8563535 TTCAATTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
63 4 0.06
64 32 0.52
65 23 0.37
66 3 0.05
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (64 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCAAA
Found at i:8564333 original size:20 final size:20
Alignment explanation
Indices: 8564308--8564345 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8564298 TTTTCCTTTA
8564308 TAGGGTATC-GATACCCTCTT
1 TAGGGTATCAG-TACCCTCTT
8564328 TAGGGTATCAGTACCCTC
1 TAGGGTATCAGTACCCTC
8564346 ATTGCATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (20 bp):
TAGGGTATCAGTACCCTCTT
Found at i:8569447 original size:15 final size:15
Alignment explanation
Indices: 8569427--8569459 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8569417 TTCAAAGTCC
8569427 CTGTATGAATTGGCT
1 CTGTATGAATTGGCT
8569442 CTGTATGAATTGGCT
1 CTGTATGAATTGGCT
8569457 CTG
1 CTG
8569460 AATGTGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.39
Consensus pattern (15 bp):
CTGTATGAATTGGCT
Found at i:8569759 original size:20 final size:21
Alignment explanation
Indices: 8569719--8569759 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8569709 CGCTAAATGT
8569719 TGAATGGTTCAGCATTCAGCAC
1 TGAATGGTTCA-CATTCAGCAC
*
8569741 TGAATGGTTC-CATTTAGCA
1 TGAATGGTTCACATTCAGCA
8569760 GTAAACGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (21 bp):
TGAATGGTTCACATTCAGCAC
Found at i:8573487 original size:23 final size:25
Alignment explanation
Indices: 8573461--8573508 Score: 82
Period size: 23 Copynumber: 2.0 Consensus size: 25
8573451 AGGCTAGAAC
8573461 CAGAAAGGTC-GGGAA-AGGGGAGG
1 CAGAAAGGTCGGGGAAGAGGGGAGG
8573484 CAGAAAGGTCGGGGAAGAGGGGAGG
1 CAGAAAGGTCGGGGAAGAGGGGAGG
8573509 GGTGATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 10 0.43
24 5 0.22
25 8 0.35
ACGTcount: A:0.33, C:0.08, G:0.54, T:0.04
Consensus pattern (25 bp):
CAGAAAGGTCGGGGAAGAGGGGAGG
Found at i:8575104 original size:29 final size:29
Alignment explanation
Indices: 8575062--8575120 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
8575052 ATTTTCACGT
*
8575062 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAACAATGACATCAA
8575091 AACTAAATTGATGTAAACAATGACATCAA
1 AACTAAATTGATGTAAACAATGACATCAA
8575120 A
1 A
8575121 TTAATTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAACAATGACATCAA
Found at i:8576689 original size:20 final size:21
Alignment explanation
Indices: 8576633--8576705 Score: 139
Period size: 21 Copynumber: 3.5 Consensus size: 21
8576623 GGGCTATGTA
8576633 CATCGATGCACATTCAATATG
1 CATCGATGCACATTCAATATG
8576654 CATCGATGCACATTCAATATG
1 CATCGATGCACATTCAATATG
8576675 CATCGATGC-CATTCAATATG
1 CATCGATGCACATTCAATATG
8576695 CATCGATGCAC
1 CATCGATGCAC
8576706 TCTGATAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 20 0.39
21 31 0.61
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (21 bp):
CATCGATGCACATTCAATATG
Found at i:8576787 original size:63 final size:63
Alignment explanation
Indices: 8576714--8576834 Score: 170
Period size: 63 Copynumber: 1.9 Consensus size: 63
8576704 ACTCTGATAA
* * * *
8576714 AATAAAAACATCTAATGCCATTAGTGCATCGATGCATAAGGAGTGTATCGATGCACCCCATTG
1 AATAAAAACATCGAATGCCATTAGTGAACCGATGCATAAGGAGTGCATCGATGCACCCCATTG
** * *
8576777 AATAAAAACATCGAATGTGATTCGTGAACCGATGCATAAGTAGTGCATCGATGCACCC
1 AATAAAAACATCGAATGCCATTAGTGAACCGATGCATAAGGAGTGCATCGATGCACCC
8576835 GTTAAGGAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (63 bp):
AATAAAAACATCGAATGCCATTAGTGAACCGATGCATAAGGAGTGCATCGATGCACCCCATTG
Found at i:8577288 original size:20 final size:20
Alignment explanation
Indices: 8577243--8577297 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
8577233 ATGATACATA
*
8577243 TATGTGAATATTGAAAAGAAT
1 TATGTGTATA-TGAAAAGAAT
*
8577264 CATGTGTATATGAAATA-AAT
1 TATGTGTATATGAAA-AGAAT
8577284 TATGTGCTATATGA
1 TATGTG-TATATGA
8577298 GAAGTGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (20 bp):
TATGTGTATATGAAAAGAAT
Found at i:8577424 original size:18 final size:19
Alignment explanation
Indices: 8577400--8577493 Score: 102
Period size: 18 Copynumber: 4.9 Consensus size: 19
8577390 GAGGGATATA
8577400 CAGTGGTCCTTCGGGACAT
1 CAGTGGTCCTTCGGGACAT
* *
8577419 -AGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGAC-AT
*
8577438 CAGTGGTCCTTTGGGACAT
1 CAGTGGTCCTTCGGGACAT
* *
8577457 -AGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGAC-AT
*
8577476 CAGTGGTCATTCGGGACA
1 CAGTGGTCCTTCGGGACA
8577494 AATACTGAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
18 27 0.45
19 7 0.12
20 26 0.43
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (19 bp):
CAGTGGTCCTTCGGGACAT
Found at i:8577454 original size:38 final size:38
Alignment explanation
Indices: 8577400--8577493 Score: 170
Period size: 38 Copynumber: 2.5 Consensus size: 38
8577390 GAGGGATATA
8577400 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
*
8577438 CAGTGGTCCTTTGGGACATAGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
*
8577476 CAGTGGTCATTCGGGACA
1 CAGTGGTCCTTCGGGACA
8577494 AATACTGAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (38 bp):
CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
Found at i:8577494 original size:20 final size:19
Alignment explanation
Indices: 8577400--8577494 Score: 90
Period size: 20 Copynumber: 4.9 Consensus size: 19
8577390 GAGGGATATA
8577400 CAGTGGTCCTTCGGGAC-AT
1 CAGTGGT-CTTCGGGACAAT
*
8577419 -AGTGGTTCTTCGGAACAAT
1 CAGTGG-TCTTCGGGACAAT
*
8577438 CAGTGGTCCTTTGGGAC-AT
1 CAGTGGT-CTTCGGGACAAT
*
8577457 -AGTGGTTCTTCGGAACAAT
1 CAGTGG-TCTTCGGGACAAT
8577476 CAGTGGTCATTCGGGACAA
1 CAGTGGTC-TTCGGGACAA
8577495 ATACTGAACG
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
18 25 0.40
19 11 0.18
20 26 0.42
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (19 bp):
CAGTGGTCTTCGGGACAAT
Found at i:8583173 original size:30 final size:30
Alignment explanation
Indices: 8583137--8583208 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
8583127 CCCGAAGGAC
*
8583137 CTATCCAAAGGTCATAAAGATCCTCGGTAA
1 CTATCCAAAGGTCATAAAGATCCTCGGCAA
*
8583167 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAAAGGTCATAAAGATCCTCGGCAA
* *
8583197 CTGTCCATAGGT
1 CTATCCAAAGGT
8583209 TCCGAAGAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (30 bp):
CTATCCAAAGGTCATAAAGATCCTCGGCAA
Found at i:8583233 original size:31 final size:31
Alignment explanation
Indices: 8583195--8583318 Score: 101
Period size: 31 Copynumber: 4.0 Consensus size: 31
8583185 GATCCTCGGC
*
8583195 AACTGTCCATAGGTTCCGAAGAACCTAGGTA
1 AACTGTCCATAGGTTCCGAAGAACATAGGTA
* **
8583226 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATAGGTTCCGAAGAACATAGGTA
* * *
8583257 TACTGTCCATATG-TCTCGAA-AGACATAAGTA
1 AACTGTCCATAGGTTC-CGAAGA-ACATAGGTA
* ** *
8583288 ATTCTGTCCATATATTCCGTAG-ACATAGGTA
1 A-ACTGTCCATAGGTTCCGAAGAACATAGGTA
8583319 TACCCCTCGA
Statistics
Matches: 75, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
30 3 0.04
31 57 0.76
32 13 0.17
33 2 0.03
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (31 bp):
AACTGTCCATAGGTTCCGAAGAACATAGGTA
Found at i:8585221 original size:2 final size:2
Alignment explanation
Indices: 8585216--8585297 Score: 164
Period size: 2 Copynumber: 41.0 Consensus size: 2
8585206 CATCCTATCC
8585216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8585258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8585298 CATTATTTAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 80 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8586697 original size:63 final size:63
Alignment explanation
Indices: 8586607--8586727 Score: 183
Period size: 63 Copynumber: 1.9 Consensus size: 63
8586597 ACTCTGATAA
8586607 AATAAAAACATCGAATGCTATTAGTGCATC-GATGCATAAGGAGTGCATCGATGCACCCCATTG
1 AATAAAAACATCGAATGCTATTAGTGCA-CAGATGCATAAGGAGTGCATCGATGCACCCCATTG
* * *
8586670 AATAAAAACATCGAATG-TGATTCGTGCACAGATGCATAAGTAGTGCATCGATGTACCC
1 AATAAAAACATCGAATGCT-ATTAGTGCACAGATGCATAAGGAGTGCATCGATGCACCC
8586728 GTTAAGTAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
62 2 0.04
63 51 0.96
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (63 bp):
AATAAAAACATCGAATGCTATTAGTGCACAGATGCATAAGGAGTGCATCGATGCACCCCATTG
Found at i:8587183 original size:20 final size:20
Alignment explanation
Indices: 8587138--8587192 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
8587128 ATGATACATG
*
8587138 TATGTGAATATTGAAAAGAAT
1 TATGTGTATA-TGAAAAGAAT
*
8587159 CATGTGTATATGAAATA-AAT
1 TATGTGTATATGAAA-AGAAT
8587179 TATGTGCTATATGA
1 TATGTG-TATATGA
8587193 GAAGTGATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.42, C:0.04, G:0.18, T:0.36
Consensus pattern (20 bp):
TATGTGTATATGAAAAGAAT
Found at i:8587319 original size:18 final size:19
Alignment explanation
Indices: 8587295--8587388 Score: 102
Period size: 18 Copynumber: 4.9 Consensus size: 19
8587285 GAGGGATATA
8587295 CAGTGGTCCTTCGGGACAT
1 CAGTGGTCCTTCGGGACAT
* *
8587314 -AGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGAC-AT
*
8587333 CAGTGGTCCTTTGGGACAT
1 CAGTGGTCCTTCGGGACAT
* *
8587352 -AGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGAC-AT
*
8587371 CAGTGGTCATTCGGGACA
1 CAGTGGTCCTTCGGGACA
8587389 AATACTGAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
18 27 0.45
19 7 0.12
20 26 0.43
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (19 bp):
CAGTGGTCCTTCGGGACAT
Found at i:8587349 original size:38 final size:38
Alignment explanation
Indices: 8587295--8587388 Score: 170
Period size: 38 Copynumber: 2.5 Consensus size: 38
8587285 GAGGGATATA
8587295 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
*
8587333 CAGTGGTCCTTTGGGACATAGTGGTTCTTCGGAACAAT
1 CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
*
8587371 CAGTGGTCATTCGGGACA
1 CAGTGGTCCTTCGGGACA
8587389 AATACTGAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (38 bp):
CAGTGGTCCTTCGGGACATAGTGGTTCTTCGGAACAAT
Found at i:8587389 original size:20 final size:19
Alignment explanation
Indices: 8587295--8587389 Score: 90
Period size: 20 Copynumber: 4.9 Consensus size: 19
8587285 GAGGGATATA
8587295 CAGTGGTCCTTCGGGAC-AT
1 CAGTGGT-CTTCGGGACAAT
*
8587314 -AGTGGTTCTTCGGAACAAT
1 CAGTGG-TCTTCGGGACAAT
*
8587333 CAGTGGTCCTTTGGGAC-AT
1 CAGTGGT-CTTCGGGACAAT
*
8587352 -AGTGGTTCTTCGGAACAAT
1 CAGTGG-TCTTCGGGACAAT
8587371 CAGTGGTCATTCGGGACAA
1 CAGTGGTC-TTCGGGACAA
8587390 ATACTGAACG
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
18 25 0.40
19 11 0.18
20 26 0.42
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (19 bp):
CAGTGGTCTTCGGGACAAT
Found at i:8600563 original size:6 final size:6
Alignment explanation
Indices: 8600552--8600587 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
8600542 ATTGAGACAT
8600552 GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG
1 GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG GGAAGG
8600588 TTGATAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
GGAAGG
Found at i:8605107 original size:2 final size:2
Alignment explanation
Indices: 8605100--8605128 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8605090 ATTCTAACAT
8605100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8605129 CATGTACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8611090 original size:17 final size:17
Alignment explanation
Indices: 8611050--8611091 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
8611040 GGTTGTGATT
*
8611050 GTGTTGAGTTCATTTAG
1 GTGTTGTGTTCATTTAG
8611067 GTGTTGTGTTCATTTAG
1 GTGTTGTGTTCATTTAG
8611084 GTGTTGTG
1 GTGTTGTG
8611092 CCACCGATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.12, C:0.05, G:0.33, T:0.50
Consensus pattern (17 bp):
GTGTTGTGTTCATTTAG
Found at i:8625903 original size:42 final size:42
Alignment explanation
Indices: 8625844--8625924 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
8625834 ACATTGTTCC
* * *
8625844 GAGGTTTCGGTCGAGGCTTGAACCGGGACTTTTAGACCATCA
1 GAGGTTTCGGTCGAGGCTTAAACCAGCACTTTTAGACCATCA
*
8625886 GAGGTTTCGGTCGAGGCTTAAATCAGCACTTTTAGACCA
1 GAGGTTTCGGTCGAGGCTTAAACCAGCACTTTTAGACCA
8625925 ACTTTCTGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (42 bp):
GAGGTTTCGGTCGAGGCTTAAACCAGCACTTTTAGACCATCA
Found at i:8631856 original size:14 final size:14
Alignment explanation
Indices: 8631839--8631875 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
8631829 ATATATATAT
8631839 ATATATAATTTACG
1 ATATATAATTTACG
8631853 ATATATAATTTACG
1 ATATATAATTTACG
8631867 ATATATAAT
1 ATATATAAT
8631876 CACGACACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (14 bp):
ATATATAATTTACG
Found at i:8631859 original size:2 final size:2
Alignment explanation
Indices: 8631817--8631845 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8631807 GTCAATCTAC
8631817 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8631846 ATTTACGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.