genome.fa.s1468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001468.1 Hibiscus syriacus cultivar Beakdansim tig00002844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61619

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1563--1611	19	2.6	19	93	0	80	30	2	10	57	1.43
1730--2683	194	4.9	195	95	3	1649	36	15	16	31	1.90
1730--2683	390	2.4	390	95	3	1683	36	15	16	31	1.90
4134--4222	6	14.3	6	74	6	61	37	7	34	20	1.82
4149--4226	3	26.0	3	74	0	66	35	6	34	23	1.80
4137--4218	39	2.2	39	89	6	125	35	8	35	20	1.83
4137--4222	12	6.9	12	79	7	91	36	8	34	20	1.83
4137--4226	18	4.8	18	76	8	81	35	7	34	22	1.83
5690--6213	182	2.9	182	94	0	897	35	14	16	33	1.89
8675--8739	25	2.6	25	80	0	85	35	9	13	41	1.77
9082--9145	23	2.8	23	87	0	92	35	6	20	37	1.78
9082--9154	23	3.2	23	82	7	85	34	5	20	39	1.76
9197--9860	334	2.0	329	97	1	1265	42	8	11	38	1.71
13953--14565	205	3.0	205	92	3	970	32	15	13	37	1.87
19427--19458	16	2.0	16	93	0	55	9	43	9	37	1.69
20222--20265	23	1.9	23	85	0	61	40	6	15	36	1.74
20296--20355	23	2.6	23	83	0	66	40	6	18	35	1.77
20208--20430	87	2.6	87	91	0	338	42	8	14	34	1.77
20383--20430	23	2.1	23	88	0	69	37	12	16	33	1.86
20432--21111	198	3.4	199	84	4	807	32	14	13	39	1.85
21993--22058	30	2.2	31	83	8	82	50	0	0	50	1.00
21993--22076	28	2.8	32	81	15	92	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22001--22102	14	7.2	14	71	11	57	48	0	0	50	1.14
22015--22083	28	2.5	28	74	6	70	49	0	1	49	1.09
22066--22110	14	3.1	15	84	6	58	55	2	0	42	1.12
22119--22170	24	2.2	24	80	16	65	38	0	5	55	1.24
22424--22472	22	2.2	23	88	3	73	32	14	12	40	1.83
22503--22559	23	2.5	23	88	0	78	33	12	10	43	1.76
22408--22634	87	2.6	87	94	0	393	33	12	11	43	1.77
22590--22692	23	4.5	23	85	4	127	33	14	10	40	1.81
22523--22747	64	3.4	64	69	11	177	33	12	11	42	1.79
22509--22750	133	1.8	133	90	3	389	33	12	11	42	1.79
22796--22920	62	2.0	62	98	0	241	44	16	12	28	1.83
24611--24652	19	2.2	20	86	4	59	57	9	11	21	1.63
27823--27856	9	3.9	9	84	7	52	61	2	0	35	1.11
27819--27857	17	2.4	17	95	4	71	61	5	0	33	1.18
27835--27881	24	1.9	25	83	12	62	65	4	0	29	1.11
28978--29048	30	2.3	31	90	2	108	28	9	11	50	1.70
30707--30747	20	2.0	20	85	0	55	2	12	7	78	1.06
30948--31005	30	1.9	30	100	0	116	17	25	36	20	1.94
31218--31258	3	14.0	3	80	14	50	63	0	0	36	0.95
31316--31343	12	2.3	12	100	0	56	60	7	25	7	1.48
31397--31653	76	3.4	76	96	1	455	35	21	20	22	1.96
32057--33027	224	4.3	225	91	3	1478	29	19	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32860--32904	23	1.9	23	82	13	56	15	26	6	51	1.68
33465--33519	22	2.5	22	90	0	92	38	14	12	34	1.84
34184--34253	35	2.0	35	88	5	106	30	24	12	32	1.93
34184--34253	36	2.0	34	86	10	97	30	24	12	32	1.93
35172--35344	83	2.1	83	97	0	328	35	20	15	28	1.93
37601--37639	10	3.9	10	89	0	60	0	15	0	84	0.62
43879--43912	12	2.8	12	86	4	50	0	8	5	85	0.75
43890--43926	19	1.9	19	88	0	56	2	10	5	81	0.96
44378--44418	3	14.0	3	80	14	50	63	0	0	36	0.95
51825--51853	14	2.0	15	93	6	51	62	10	6	20	1.50
55712--55768	28	2.0	28	100	0	114	31	10	24	33	1.89
59608--59636	14	2.0	15	93	6	51	62	10	6	20	1.50

Tables:   1

The End!