genome.fa.s1469.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001469.1 Hibiscus syriacus cultivar Beakdansim tig00002845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61666

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7816--7874	31	1.9	31	86	3	84	38	6	10	44	1.65
7819--7886	31	2.2	30	82	7	75	44	5	10	39	1.63
8780--8826	24	2.0	24	95	0	85	40	8	10	40	1.70
11384--11414	16	1.9	16	93	0	53	74	16	3	6	1.16
11546--11716	85	2.0	84	94	1	297	37	15	14	32	1.88
13509--13534	2	13.0	2	100	0	52	50	0	0	50	1.00
19861--19899	20	2.0	19	90	5	60	28	2	10	58	1.44
19861--19898	19	2.0	19	85	10	51	28	2	10	57	1.45
20857--20891	16	2.2	16	89	0	52	28	0	0	71	0.86
23042--23082	17	2.4	17	95	0	73	24	26	36	12	1.91
26101--26181	36	2.3	36	83	8	96	48	0	1	50	1.08
26145--26178	15	2.3	15	89	0	50	50	0	0	50	1.00
29530--29612	24	3.3	26	74	17	86	54	0	3	42	1.18
29533--29618	26	3.4	25	79	12	79	52	0	3	44	1.18
29507--29604	24	4.1	24	74	14	78	53	0	3	43	1.16
29520--29627	26	4.4	24	72	22	75	54	0	2	42	1.14
29834--29951	38	3.1	38	78	8	123	44	2	16	36	1.62
30321--30388	34	2.0	34	97	0	127	57	8	13	20	1.62
34460--34830	185	2.0	184	92	1	618	41	2	9	46	1.49
42773--42865	30	3.1	29	78	9	105	36	17	17	29	1.92
42773--42864	31	3.0	30	76	10	98	36	16	17	29	1.92
43083--43112	15	2.0	15	93	0	51	26	26	3	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43671--43719	22	2.2	22	77	0	53	36	16	4	42	1.67
45936--45968	17	1.9	17	93	0	57	27	21	12	39	1.88
51418--51505	21	4.3	20	71	7	61	37	19	20	22	1.94
51449--51546	41	2.4	41	94	0	169	38	22	17	21	1.93
51452--51546	20	4.7	20	72	11	77	36	23	17	22	1.95
51713--51756	22	2.0	22	95	0	79	20	45	15	18	1.85
53398--53445	18	2.7	18	93	0	87	27	45	12	14	1.81
53986--54040	20	2.8	19	83	5	74	36	23	23	16	1.94
54024--54117	19	5.5	19	65	31	68	45	21	20	12	1.84
54024--54115	33	2.8	33	96	0	166	46	21	19	11	1.82
54134--54206	33	2.2	33	95	0	128	13	19	20	46	1.83
54148--54206	19	3.4	19	65	29	58	15	20	18	45	1.85
54191--54265	20	3.8	20	92	1	116	16	26	24	33	1.95
54211--54290	20	4.1	19	87	6	79	18	20	26	35	1.95
54632--54711	42	1.9	42	92	0	133	22	41	15	21	1.90
56299--56373	19	3.9	19	94	0	123	49	17	21	12	1.78
56270--56385	33	3.3	33	82	12	133	45	19	20	13	1.84
56404--56459	20	2.8	20	94	0	94	14	21	23	41	1.89
56806--56887	20	4.1	20	93	3	137	29	20	28	21	1.98
56806--56887	41	2.0	40	92	2	137	29	20	28	21	1.98
57569--57622	24	2.2	24	90	0	81	22	16	20	40	1.91
57797--57821	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60110--60177	18	4.1	18	70	18	65	45	13	22	19	1.84
60110--60222	50	2.2	51	82	4	140	45	16	23	15	1.85
60212--60253	19	2.2	19	86	0	57	14	21	23	40	1.90
60219--60262	19	2.3	19	100	0	88	11	15	27	45	1.81
60401--60437	14	2.6	14	91	0	65	45	21	0	32	1.52

Tables:   1

The End!