genome.fa.s147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000147.1 Hibiscus syriacus cultivar Beakdansim tig00000262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36328

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038--1111	20	3.5	20	76	16	69	24	36	17	21	1.95
1131--1183	20	2.7	20	87	0	79	15	30	24	30	1.95
2562--2590	14	2.1	14	93	6	51	62	0	34	3	1.12
4217--4256	21	1.9	21	89	0	62	35	10	5	50	1.58
13451--13514	32	2.0	32	100	0	128	15	43	6	34	1.72
26472--26562	42	2.2	42	88	4	130	18	13	18	49	1.79
26759--26821	23	2.6	24	78	19	60	50	1	0	47	1.10
26793--26839	22	2.1	23	88	4	69	44	2	0	53	1.12
26787--26856	32	2.2	32	85	10	90	45	2	0	51	1.16
26798--26978	53	3.3	54	72	18	151	49	1	1	48	1.18
26851--26922	30	2.4	30	78	13	78	47	0	1	51	1.09
26968--27012	23	2.0	23	90	0	72	53	2	0	44	1.13
26949--27012	34	1.9	32	84	12	85	53	3	0	43	1.16
27318--27357	14	2.9	14	96	0	62	32	20	17	30	1.95
27311--27363	14	3.8	14	87	0	61	35	16	15	32	1.90
27367--27425	14	4.1	14	76	4	64	35	18	6	38	1.78
29126--29265	36	3.9	36	91	0	217	26	16	14	42	1.86
29872--29904	14	2.4	14	90	10	50	21	3	12	63	1.41
32717--32749	16	2.1	16	100	0	66	57	24	12	6	1.57
32815--32889	10	7.7	10	69	21	61	57	21	12	9	1.62
32819--32883	16	4.1	16	95	0	121	56	23	12	7	1.61
33635--33690	14	4.3	14	73	17	57	53	21	14	10	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33615--33689	24	3.1	24	84	3	89	56	18	12	13	1.68

Tables:   1

The End!