Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001471.1 Hibiscus syriacus cultivar Beakdansim tig00002852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68233

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4358--4389
16
2.0
16
93
0
55
18
21
31
28
1.97
4359--4417
18
3.4
18
83
4
68
20
16
32
30
1.95
6858--6892
17
2.1
17
100
0
70
34
11
0
54
1.37
14071--14110
2
20.5
2
89
5
64
2
47
0
50
1.14
17226--17268
22
1.9
23
90
4
70
6
46
4
41
1.51
19847--19905
31
1.9
31
82
6
75
32
1
13
52
1.50
21944--22016
28
2.8
27
76
17
82
38
0
5
56
1.23
21980--22060
14
5.7
15
70
18
57
40
2
3
53
1.32
21964--22087
34
4.0
33
76
22
133
40
2
4
53
1.33
22022--22080
20
3.3
19
79
15
72
40
3
1
54
1.27
22187--22264
27
2.7
28
82
9
95
39
5
1
53
1.31
22187--22270
28
2.9
29
79
10
91
39
7
1
52
1.37
22253--22494
120
2.0
122
86
7
346
37
11
3
47
1.57
28908--28952
5
9.8
5
88
9
53
62
0
0
37
0.96
28913--28952
9
4.4
9
84
9
55
60
0
0
40
0.97
28908--28953
14
3.4
14
82
11
60
63
0
0
36
0.95
28967--28995
5
5.8
5
100
0
58
41
0
0
58
0.98
28968--29001
15
2.3
15
89
0
50
47
0
0
52
1.00
29957--30008
21
2.5
21
87
3
70
53
0
0
46
1.00
30095--30134
17
2.4
16
84
12
53
57
7
0
35
1.27
30686--30727
10
4.1
10
79
14
50
0
30
2
66
1.04
31141--31176
16
2.2
16
95
0
63
36
11
47
5
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31672--31711
17
2.3
18
91
4
64
62
0
0
37
0.95
33992--34030
15
2.6
16
92
8
64
64
0
5
30
1.15
37077--37143
3
22.0
3
87
3
98
62
0
0
37
0.95
38809--38913
24
4.4
24
82
7
101
41
0
20
37
1.58
38809--38909
48
2.2
46
81
13
118
43
0
19
35
1.58
39418--39613
107
1.8
107
85
0
275
36
11
13
38
1.81
39597--39672
2
38.0
2
100
0
152
50
0
0
50
1.00
43927--43951
2
12.5
2
100
0
50
48
0
0
52
1.00
47715--47764
16
2.8
19
77
20
63
30
26
2
42
1.66
50140--50178
20
2.0
20
85
10
53
30
20
5
43
1.73
51183--51221
17
2.3
17
86
0
51
56
23
2
17
1.53
59516--59555
17
2.4
17
91
0
62
40
17
5
37
1.72
61093--61131
14
2.9
14
88
11
64
87
0
0
12
0.55
61094--61146
12
4.1
12
83
11
61
84
0
5
9
0.76
61094--61147
20
2.8
18
78
13
54
83
0
5
11
0.80
63250--63333
17
4.9
17
73
2
60
35
13
8
42
1.74

Tables:   1

The End!