genome.fa.s1472.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001472.1 Hibiscus syriacus cultivar Beakdansim tig00002854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88268

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577--1847	133	2.0	136	94	2	485	30	9	11	47	1.71
11341--11660	81	3.9	81	75	8	238	32	17	19	30	1.95
11362--11661	162	1.8	164	83	7	396	33	17	18	30	1.94
17697--17739	20	2.2	20	95	0	77	53	4	18	23	1.63
22909--22941	6	5.5	6	100	0	66	0	0	36	63	0.95
27545--27576	2	16.0	2	100	0	64	50	0	0	50	1.00
28763--28937	3	57.7	3	87	2	251	35	1	1	61	1.13
29639--29665	13	2.1	13	100	0	54	0	33	59	7	1.25
30165--30216	20	2.7	19	82	5	61	40	0	3	55	1.18
31021--31057	15	2.7	15	88	12	53	24	5	8	62	1.44
34330--34362	14	2.3	15	94	5	59	45	0	3	51	1.16
42588--42733	52	2.9	50	91	5	240	24	14	21	39	1.91
42588--42741	50	3.0	50	89	4	238	25	14	22	37	1.92
42774--43117	52	6.7	52	95	2	608	24	14	22	37	1.92
42774--43122	152	2.3	155	93	2	607	24	14	22	37	1.92
43685--44256	119	4.9	118	89	4	844	37	12	20	28	1.90
43685--44252	233	2.4	231	89	5	835	37	12	20	29	1.90
44557--44716	3	53.0	3	82	8	191	35	1	1	61	1.15
45854--45905	20	2.7	19	82	5	61	40	0	3	55	1.18
47978--48087	33	3.7	32	72	20	119	20	32	34	11	1.89
48093--48151	29	2.0	29	83	0	73	16	25	30	27	1.97
48159--48255	22	4.4	22	94	0	167	8	48	17	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48591--48626	17	2.1	17	94	0	63	19	0	38	41	1.52
48761--48834	30	2.4	31	82	6	89	39	1	12	47	1.49
48888--48921	15	2.2	16	94	5	61	38	0	5	55	1.24
50147--50191	23	2.0	23	86	0	63	37	4	2	55	1.32
50141--50195	23	2.6	21	78	13	58	38	3	1	56	1.28
51156--51197	17	2.5	17	80	0	57	57	2	0	40	1.12
51324--51679	14	26.3	14	70	18	177	44	9	3	43	1.52
51349--51391	22	2.0	22	95	0	77	46	9	0	44	1.35
51311--51701	26	15.7	26	75	11	286	45	8	3	42	1.51
51414--51685	98	2.8	98	94	1	474	44	9	2	42	1.52
51570--51778	35	5.5	35	67	22	100	49	11	1	37	1.47
51693--51755	19	3.5	19	67	20	62	52	14	1	31	1.51
51675--51771	16	5.9	16	69	24	60	52	11	1	35	1.44
51344--51745	124	3.3	123	78	12	387	46	9	2	41	1.52
51689--51771	8	9.4	9	70	23	52	53	12	1	33	1.46
51686--51777	19	5.2	18	65	24	52	53	10	1	34	1.43
51988--52114	49	2.6	49	94	1	218	45	13	0	40	1.43
52035--52117	24	3.4	24	66	21	73	43	15	0	40	1.47
52093--52128	14	2.6	14	86	0	54	44	19	0	36	1.51
51966--52239	112	2.5	112	85	7	364	45	12	0	41	1.46
52043--52177	63	2.1	64	91	4	229	45	13	0	41	1.43
53786--53946	83	1.9	84	93	3	281	49	8	2	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54408--54461	28	1.9	28	96	0	99	57	12	0	29	1.36
54404--54468	28	2.3	28	84	10	96	55	10	0	33	1.35
54438--54486	21	2.3	21	85	3	71	53	16	0	30	1.43
54952--55068	62	1.9	62	96	0	216	29	18	36	15	1.92
55769--55861	13	7.5	13	68	25	58	65	3	0	31	1.08
55784--55863	16	4.8	17	79	14	87	65	0	0	35	0.93
56399--56437	18	2.0	18	85	14	51	46	0	0	53	1.00
56518--56593	20	3.3	23	71	19	70	35	0	0	64	0.94
56516--56601	34	2.5	36	77	11	108	34	1	0	63	1.02
56516--56593	9	9.1	9	72	20	69	35	0	0	64	0.94
56528--56599	13	5.5	14	72	20	57	34	1	0	63	1.03
56939--57205	140	2.0	131	85	9	355	24	8	12	53	1.67
57310--57363	28	2.0	27	85	3	72	24	1	3	70	1.13
59288--59326	20	2.0	20	85	10	53	25	17	7	48	1.74
61509--61557	24	2.0	24	100	0	98	46	16	12	24	1.81
63632--63669	20	1.9	20	100	0	76	47	10	36	5	1.61
64143--64205	29	2.2	29	83	10	78	65	6	19	9	1.43
64281--64336	14	4.1	14	73	17	55	42	0	0	57	0.99
64284--64329	2	25.0	2	79	16	55	45	0	0	54	0.99
64284--64329	9	5.0	10	80	17	55	45	0	0	54	0.99
65496--65526	2	16.0	2	93	6	55	48	0	0	51	1.00
65791--65834	10	4.5	10	85	5	63	13	9	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65782--65860	29	2.7	28	81	11	88	15	8	1	74	1.12
68090--68144	18	3.1	18	74	25	55	30	3	1	63	1.22
68091--68240	12	11.3	14	69	22	53	37	4	2	56	1.29
68207--68239	2	16.5	2	100	0	66	48	0	0	51	1.00
68381--68448	29	2.3	29	76	14	68	16	5	1	76	1.05
71063--71099	15	2.3	17	81	13	51	37	5	2	54	1.38
72474--72526	27	1.9	28	84	3	72	39	3	0	56	1.17
72500--72558	21	2.8	20	73	16	57	42	3	1	52	1.28
72627--72689	27	2.4	26	80	17	69	42	4	1	50	1.32
72832--72869	16	2.2	18	86	9	53	31	0	0	68	0.90
73001--73050	15	3.3	15	71	17	50	62	0	0	38	0.96
72972--73021	22	2.1	24	85	10	68	60	0	2	38	1.09
72998--73055	30	1.9	31	92	3	100	62	0	1	36	1.06
73716--73759	22	2.0	23	91	8	74	52	0	0	47	1.00
73895--73927	15	2.1	16	88	5	50	21	3	12	63	1.41
74872--74901	5	6.2	5	92	7	53	80	0	0	20	0.72
74872--74901	14	2.1	15	93	6	53	80	0	0	20	0.72
77500--77618	42	2.8	42	85	1	166	35	21	21	22	1.96
78825--78868	20	2.2	20	91	0	70	52	13	15	18	1.75
81005--81058	21	2.6	21	75	0	54	12	12	48	25	1.78
81199--81306	43	2.5	44	84	1	155	38	17	13	29	1.89
84975--85018	19	2.3	19	96	0	79	45	15	6	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85048--85081	16	2.1	17	88	5	52	20	2	8	67	1.31

Tables:   1

The End!